BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61560.1 Length=2901 Score E Sequences producing significant alignments: (Bits) Value Ahg496321 jgi|Araly1|496321|fgenesh2_kg.8__2137__AT5G61560.1 4470 0.0 > Ahg496321 jgi|Araly1|496321|fgenesh2_kg.8__2137__AT5G61560.1 Length=2882 Score = 4470 bits (2420), Expect = 0.0 Identities = 2749/2905 (95%), Gaps = 34/2905 (1%) Strand=Plus/Plus Query 1 ATCATTACTTCTTTGAATCTTTGGTTATAACCATTAAAGAATTCAACTGGTATGCGCATA 60 ||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| Sbjct 1 ATCATTACTTCTTTGAATCTTTGGTTATATCCATAAAAGAATTCAACTGGTTTGCGCATA 60 Query 61 AATTTCCGCATAACTCCATTAATATAATCAGGAGACCAATTCACTGGACTCAAATTTGAT 120 |||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||||||| Sbjct 61 AATTTCCGTATAACTCCATTAATTTAATCA-GAGACAAATTCACTGGACTCAAATTTGAT 119 Query 121 TCGtcttcttcttctctctctctctcCATTTGTCAAGAAGCTGTTGAATCATCGTCCCCC 180 |||||||||||||||||||||||||||||||||||||||||||||| | | | | Sbjct 120 TCGTCTTCTTCTTCTCTCTCTCTCTCCATTTGTCAAGAAGCTGTTG-A--A---T----C 169 Query 181 ACGAGTTTTGGAAAAAGC-TTGCAAGTCAAATATCAATAGCACGACTAGAGATTAAGGAA 239 | ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| Sbjct 170 A--AGTTTTGGAAAAAGCTTTG-AAGTCAAATATCAATAGCACGACGAGAGATTAAGGAA 226 Query 240 ACAAAAGCTTGAACCTTTGTAGTCAAAATCA-TCAGATCTTAGCCGTTGGAAATCCAGAG 298 |||||||||| |||||||| ||||||||| | ||||||||||||||||| |||||||||| Sbjct 227 ACAAAAGCTTCAACCTTTGAAGTCAAAAT-ACTCAGATCTTAGCCGTTGAAAATCCAGAG 285 Query 299 ATGGGAGACGGAGCTTTAATCGTAGCGGTGGCTATCAAAGGGAACAATAGCAAAACCAAA 358 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 286 ATGGGAGATGGAGCTTTAATCGTAGCGGTGGCTATTAAAGGGAACAATAGCAAAACCAAA 345 Query 359 GGCGTTGTTCGATGGGCACTTCAAGAATTTGCTTCTCAAGAACATGTCGTCTTCAAGCTC 418 ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 346 GGCGTTGTTCGATGGGCACTTCAAGAATTCGCTTCTCGAGAACATGTCGTCTTCAAGCTC 405 Query 419 TTACATGTCCAACCAAGAGATTCGAATTCGGTTTCAACTACAAGAAAAGATTTGACCACA 478 ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| Sbjct 406 TTACATGTCCAACCAAGAGATTCGAATACGGTTTCGACTACAAGAAAAGATTCCACCACA 465 Query 479 AGTGTTTACAAAAAAGATGTTGATAGAAAAACCAGAGAGATGCTTCTTCCAAGCAGAGAC 538 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 AGTGTTTACAAGAAAGATGTTGATAGAAAAACCAGAGAGATGCTTCTTCCAAGCAGAGAC 525 Query 539 ATGTTTGTTCATAGAGAGGTTCAATTGGATATAATGGTGCTTGAATCAGACGATATAGCT 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 526 ATGTTTGTTCATAGAGAGGTTCAATTGGATATAATGGTGCTTGAATCAGACGATGTAGCT 585 Query 599 GATGCAATCTCTAAAGCAGTTCAAGATCATGGAATTAGTGAGCTAGTCATTGGAGCTTCC 658 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 586 GATGCAATCTCTAAAGCGGTTCAAGATCATGGAATTAGTGAGCTAGTCATTGGAGCTTCT 645 Query 659 TCTTCAATCATCTTCTCATGGAAGTTGAAGAGAAGCAACTTGTCTTCAAGAATTGCAGAT 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 646 TCTTCAATCATCTTCTCATGGAAGTTGAAGAGAAGCAACTTGTCTTCAAGAATTTCAGAT 705 Query 719 GCTACACCAAGATTTTGCTCAGTTCATGTTATCTCTAAAGGAAAGCTTCTCAATGTTCGT 778 |||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| Sbjct 706 GCTACACCAAGATTTTGCACAATTCACGTTATCTCTAAAGGAAAGCTTCTCAATGTTCGT 765 Query 779 AAATCCGATATGGACACCGAAACGAGCATTGCAGACGATAGAAGCGAAAGCCGGTTCTCT 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 AAATCCGATATGGACACCGAAACGAGCATTGCAGACGATAGAAGCGAAAGCCGGTTCTCT 825 Query 839 TCAGATAGCCATTCAGGAACAGTAAGTTCGACATCGAGTCATCAATTCTCATCAACACCT 898 |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 826 TCAGATAGTCATTCAGGATCAGTAAGTTCGACATCGAGTCATCAATTCTCATCAAAACCT 885 Query 899 TTACTCTTCCAACGAATCCAAGCCCTAACAACCGTGAACCAGAAGGTTGGAACAAACATT 958 |||||||||||| || ||||||| || ||||||| ||||||||||||||||| |||||| Sbjct 886 TTACTCTTCCAAAGAGTCCAAGCACTTTCAACCGTCAACCAGAAGGTTGGAACCAACATT 945 Query 959 GGAAAACAGAACAATGAACCGCATCATCATCATCATAACAGAGCTGGGTCTCTAGACGTG 1018 ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| | Sbjct 946 GGAAAACAGAACAATGATCAGCATCATCATCATCATAACAGAGCCGGGTCTCTAGACGAG 1005 Query 1019 GATGAATCAAAGTTACTGAACCAGAAGGGCTTTTATCGAACAAGCAGCTCCGGAATCGGG 1078 ||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||| Sbjct 1006 GATGAATCAAAGTTACTGAACCAGAAGGGCTTTTACCGAACAAGCAGCTCGGGCATTGGG 1065 Query 1079 TATGGAGGAAGTGATATCAGTAGCTGGAGAAGCTCTCAGATGGAAGAGGCTTCAAGCTCA 1138 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1066 TATGGAGGAAGCGATATCAGCAGCTGGAGAAGCTCTCAGATGGAAGAGGCTTCAAGCTCA 1125 Query 1139 AGTACCTACAGTGACCCTACTTCATCTAGTAGCCAGATACA-TAAAGACTTTGAGTTAGA 1197 |||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| Sbjct 1126 AGTACCTACAGTGACCCTACTTCATCTAGTAGCCAGGC-CAATAAAGACTTTGAATTAGA 1184 Query 1198 GAAGCTGAAGATTGAACTCCGTCACATTAAAGGAATGTATGCAGTTGCTCAAAGCGAAGT 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1185 GAAGCTGAAGATTGAACTCCGTCACATTAAAGGAATGTATGCAGTTGCTCAAGGCGAAGT 1244 Query 1258 CATCGATGCTTCTAAAAAGATGCAAGATCTGAACCAGCGGCGATCAGAGGAAGCTACAAG 1317 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1245 CATTGATGCTTCTAAAAAGATGCAAGATCTGAACCAGCGGCGATCAGAGGAAGCTATGAG 1304 Query 1318 GCTCAAGAACTTAACGATAAGAGAAGAAGAAGCGGATGAAGTGGTGGAAATGGAGAGGGA 1377 ||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | ||| Sbjct 1305 GCTCAAGAACTTAACGATAAGAGAAGAAGAAGCTGATGAAGTGGTAGAGATGGAAAAGGA 1364 Query 1378 GAGACAAGAGGATGCGGAAAACGAAGCTGAGCTCGTGAGAGAATGCATTgagagagaaac 1437 |||||||||||| |||||||| || |||||||| |||| ||||||||||||||||||||| Sbjct 1365 GAGACAAGAGGAAGCGGAAAATGAGGCTGAGCTTGTGAAAGAATGCATTGAGAGAGAAAC 1424 Query 1438 cgaagagagacttgaggcggaagcaagagcggaagaggttagaaaagagaagCAGAGGTT 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1425 CGAAGAGAGACTTGAGGCGGAAGCAAGAGCGGAAGAGGTTAGAAAAGAGAAGCAGAGGCT 1484 Query 1498 AGAGGATGCACTTGAAGGTGGACCGCTTCAACGCCAACAATACATGAAATTTGAGTGGGA 1557 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1485 AGAGGATGCACTTGAAGGCGGACCGCTTCAACGCCAACAATACATGAAATTTGAGTGGGA 1544 Query 1558 AGAGATCGTCGAGGCGACGTCATCTTTCTCGGATGAACTT-AAGATCGGAGTCGGTGGTT 1616 |||||||||| ||||||||||||| ||||| ||||| ||| ||||||||||| || |||| Sbjct 1545 AGAGATCGTCAAGGCGACGTCATCCTTCTCCGATGA-CTTTAAGATCGGAGTGGGCGGTT 1603 Query 1617 ACGGAAGCGTATATAGGTGTAACTTGCATCACACGACAGTAGCTGTCAAGGTTCTTCATT 1676 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1604 ACGGAAGCGTATATCGGTGTAACTTGCATCACACGACAGTAGCTGTCAAGGTTCTTCATT 1663 Query 1677 CAGACAAAAGTAGTTTAACCAAACAGTTTCACCAAGAGCTTGAGATTCTTAGCAAGATTC 1736 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1664 CAGACAAAAGTAGCTTAACCAAACAGTTTCACCAAGAGCTTGAGATTCTTAGCAAGATTC 1723 Query 1737 GTCATCCACACTTGCTTCTCCTCCTAGGCGCGTGTCCTGAACGCGGAAGCTTAGTTTACG 1796 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1724 GTCACCCACACTTGCTTCTCCTCCTAGGCGCGTGTCCTGAACGCGGCAGCTTAGTCTACG 1783 Query 1797 AGTATATGCACAACGGAAGCCTTGAGGAAAGACTCATGAAACGCCGACCAAACGTTGACA 1856 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1784 AGTATATGCACAACGGAAGCCTCGAGGAAAGACTCATGAAACGCCGACCAAACGTTGACA 1843 Query 1857 CACCGCAACCGCCGCCATTACGGTGGTTCGAGCGGTTCCGAATCGCTTGGGAGATCGCTT 1916 |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1844 CACCGCAACCACCGCCGTTACGGTGGTTCGAGCGGTTCCGAATCGCTTGGGAGATTGCTT 1903 Query 1917 CAGCACTCTACTTTCTCCACACAAACGAACCAAGACCAATCGTTCACCGCGATCTTAAAC 1976 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1904 CAGCTCTCTACTTTCTCCACACAAACGAACCAAGACCAATCGTTCACCGAGATCTTAAAC 1963 Query 1977 CAGCCAATATCCTCCTAGACCGGAACAATGTGAGCAAAATCGGAGACGTAGGCCTTTCCA 2036 | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1964 CGGCCAATATACTCCTAGACCGGAACAATGTGAGCAAAATCGGAGACGTAGGCCTCTCCA 2023 Query 2037 AAATGGTTAATCTTGATCCTTCTCATGCCTCAACGGTTTTCAACGAAACCGGTCCAGTTG 2096 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2024 AAATGGTTAATCTTGATCCTTCTCATGCCTCAACGGTTTTCAACGAAACCAGTCCAGTTG 2083 Query 2097 GAACATTCTTCTACATAGATCCTGAATACCAAAGAACCGGAGTGGTAACTCCCG-AATCT 2155 |||||||||||||||| ||||| |||||||||||||||||||| ||||| |||| ||||| Sbjct 2084 GAACATTCTTCTACATTGATCCCGAATACCAAAGAACCGGAGTCGTAAC-CCCGGAATCT 2142 Query 2156 GATATCTACGCGTTTGGAATCATACTTCTTCAGCTAGTCACAGCTAGATCCGCGATGGGT 2215 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2143 GATATTTACGCGTTTGGAATCATACTTCTTCAGCTAGTCACAGCTAGATCCGCCATGGGA 2202 Query 2216 TTGGCTCATTCGATAGAGAAAGCGTTGAGAGATCAAACCGGGAAATTTACAGAGATCTTG 2275 ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 2203 TTGGCTCATACGATAGAGAAAGCTTTAAGAGATCAAACCGGGAAATTTACAGAGATCTTG 2262 Query 2276 GATAAAACTGCTGGAGATTGGCCGGTTAAGGAAGCTAAAGAGATGGTTATGATAGGGCTT 2335 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 2263 GATAAAACTGCTGGAGATTGGCCGGTTAAGGAAGCGAAAGAGATGGTTATGATAGGACTT 2322 Query 2336 AGATGTGCAGAGATGAGAAAGCGTGATCGTCCTGATTTAGGGAAAGAGATTTTGCCGGTT 2395 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2323 AGATGTGCGGAGATGAGAAAGCGTGATCGTCCTGATTTAGGGAAAGAAATTTTGCCGGTT 2382 Query 2396 CTTGAACGGTTAAAGGAAGTTGCGTCTATCGCAAGGAACATGTTTGCTGATAACCTAATT 2455 |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| Sbjct 2383 CTTGAACGGTTAAAGGAAGTTGCGTCTAACGCAAGAAACATGTTTGCTGATAACGTAATT 2442 Query 2456 GATCATCACCATAACGCTCCGACCCATTTCTACTGTCCAATAACAAAGGATGTGATGGAG 2515 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2443 GATCATCACCATAACGCTCCGAACCATTTCTACTGTCCAATAACAAAGGATGTGATGGAG 2502 Query 2516 AATCCATGTGTTGCTTCGGATGGATATACGTATGAGAAGAGAGCGATTAAGGAATGGCTT 2575 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2503 AATCCATGTGTTGCTTCGGATGGATACACGTATGAGAAGAGAGCGATTAAGGAATGGCTT 2562 Query 2576 CAGAAGAATCATAAATCTCCAATGACGGATTTGCCCTTTCCTAGTGATTCTCTTCTTCCT 2635 |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| Sbjct 2563 CAGAAGAATCATAAATCTCCAATGACGGATTTGCCCTTCCCTAATCATTCTCTTCTTCCT 2622 Query 2636 AATCATTCTCTTCTTTCTGCAATCAAGGAGTGGAGATCACAACTAATTAAATAAATTAAT 2695 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 2623 AATCATTCTCTTCTTTCTGCAATTAAGGAGTGGAGATCAC---TAATTAAATAAATTAAT 2679 Query 2696 TAAAGGTTC----TTAAATTTATACGGCTAAATTCGTCAATTAACATGAATCGTTGTGGT 2751 ||||||||| || ||||| || |||||||||| ||| |||||||| || |||||| | Sbjct 2680 TAAAGGTTCAAGGTTTAATTTGTAGGGCTAAATTCATCAGTTAACATGCATTGTTGTGTT 2739 Query 2752 TTTTGTTTT-GTCATACCATTCTTGCGCACAAACGTTGATGAAATATTCGAGCTTTTGTG 2810 |||| |||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||| Sbjct 2740 TTTTTTTTTTGTCATACCATTCTTGCCCACAAACGTTGATGAAATACTCGAGTTTTTGTG 2799 Query 2811 TGTAAAttttttttACCTTATTTGTTTGATTGTATTATAGGTTTTGACTGCATATTTGCA 2870 ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 2800 TGTAAATTTTTTT-ACCTTATTTGTTTGATTGTATTATAGGTTTTGGCTGCACATTTGCA 2858 Query 2871 AG-AAGAATATAATAGTGTTGATTT 2894 || || || |||||||||||||||| Sbjct 2859 AGGAAAAA-ATAATAGTGTTGATTT 2882 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109509454375 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5