BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61590.1 Length=887 Score E Sequences producing significant alignments: (Bits) Value Ahg496326 jgi|Araly1|496326|fgenesh2_kg.8__2142__AT5G61590.1 1238 0.0 > Ahg496326 jgi|Araly1|496326|fgenesh2_kg.8__2142__AT5G61590.1 Length=838 Score = 1238 bits (670), Expect = 0.0 Identities = 765/809 (95%), Gaps = 14/809 (2%) Strand=Plus/Plus Query 67 ATGGAGACTTTTGAGGAAAGCTCTGATTTGGATGTTATACAGAAACATCTATTTGAAGAC 126 |||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 44 ATGGCGACTTTTGAGGAAAGCTCTGATCTGGATGTTATACAGAAACATCTGTTTGAAGAC 103 Query 127 TTGATGATCCCTGATGGTTTCATTGAAGATTTTGTCTTTGATGATACTGCTTTTGTCTCC 186 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 104 TTGATGATCCCTGATGGTTTTATTGAAGATTTTGTCTTTGATGATACTGCTTTTGTCTCA 163 Query 187 GGACTCTGGTCTCTAGAACCCTTTAACCCAGTTCCGAAACTGGAACCTAGTTCACCTGTT 246 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 164 GGACTCTGGTCTTTAGAACCCTTTAACCCAGTTCCTAAACTGGAACCTAGTTCACCTG-- 221 Query 247 CTTGATCCAGATTCCTATGTCCAAGAGATTCTGCAAATGGAAGCAGAatcatcatcatca 306 | |||||||||||||||||||||| |||||||||||||||||| | |||||||||| Sbjct 222 --T--TCCAGATTCCTATGTCCAAGAGTTTCTGCAAATGGAAGCAG-A--ATCATCATCA 274 Query 307 tcatcaACAACAACGTCACCTGAGGTTGAGACTGTCTCAAACCGGaaaaaaaCAAAGAGG 366 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 275 TCATCAACAACAACATCACCTGAGGTTGAGACTGTCTCAAACCGAAAAAAAACAAAGAGG 334 Query 367 TTTGAAGAAACGAGACATTACAGAGGCGTGAGAAGGAGGCCATGGGGGAAATTTGCAGCA 426 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 335 TTTGAAGAGACGAGACATTACAGAGGCGTGAGAAGGAGGCCATGGGGGAAATTTGCAGCA 394 Query 427 GAGATTCGAGATCCGGCAAAGAAAGGATCCAGGATTTGGTTAGGCACTTTTGAGAGTGAT 486 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 395 GAGATTCGAGATCCCGCGAAGAAAGGATCCAGGATTTGGTTAGGCACTTTTGAGAGTGAT 454 Query 487 ATTGATGCTGCAAGGGCTTACGACTATGCAGCTTTTAAGCTCAGGGGAAGAAAAGCTGTT 546 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 455 ATTGATGCTGCAAGAGCTTATGACTATGCAGCTTTTAAGCTCAGGGGAAGAAAAGCTGTC 514 Query 547 CTCAACTTTCCTTTGGATGCCGGAAAGTATGATGCTCCGGTCAATTCATGCCGAAAAAGG 606 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 515 CTCAATTTTCCTTTGGATGCCGGGAAGTATGATGCTCCGGTCAATTCATGCCGAAAAAGG 574 Query 607 AGGAGAACCGATGTACCACAGCCTCAAGGAACAACAACAAGTACTTCATCATCGTCATCA 666 ||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct 575 AGGAGAAGCGATGTACCGCAGCCTCAAGGAACAACAACGAGTACTTCATCATCATCATCA 634 Query 667 AACTAATGGGGGAATAGTGATGTTTAATTAGTATATATAGGTTAATATCTTAAGTATGTG 726 |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 635 AACTAATGGG--AATAGTGATGTTTAATTAGTATATATAGGTTAATCTCTTAAGTATGTG 692 Query 727 AAGCATCATGTATAGAGCCAAGAACCTGTTAGACTAGTGTACTGAAAAGAACTCTTGCAA 786 |||||| ||||||||||||||| | ||||| |||||||||||||| ||||||||||| Sbjct 693 AAGCAT---GTATAGAGCCAAGAAAATATTAGATTAGTGTACTGAAAAAAACTCTTGCAA 749 Query 787 AATATGTACTAAAGAGTTCCTGTAACAATGGAACTTCTGCGTTTTCTCTTGTCTTAAAGA 846 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 750 AATATGTACTAAAGAGTTCCTGTAACAATGGAACTTCTGTGTTTTCTCATGTCTTAAAGA 809 Query 847 GCTTAAGGTTCTAGAAACAAAGTTCTTGT 875 ||||||||||||||||||||||||||||| Sbjct 810 GCTTAAGGTTCTAGAAACAAAGTTCTTGT 838 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32861954454 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5