BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61640.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950924 jgi|Araly1|950924|scaffold_802811.1 952 0.0
Ahg940206 jgi|Araly1|940206|scaffold_600750.1 529 2e-149
Ahg487579 jgi|Araly1|487579|fgenesh2_kg.6__713__AT5G07460.1 318 4e-86
> Ahg950924 jgi|Araly1|950924|scaffold_802811.1
Length=649
Score = 952 bits (515), Expect = 0.0
Identities = 604/647 (93%), Gaps = 5/647 (1%)
Strand=Plus/Plus
Query 55 TCTCTACAAAATTTCTCCATGAACATACTTAACAAGCTAGGTATAGGATCAAGTAGACAA 114
|||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||
Sbjct 3 TCTCTACAAAATTTCTCCATGAACATACTTAACAAGCTCGGTATCGGATCCAGCAGACAA 62
Query 115 ACCAACATGGATCCTTCTCCAATCGCACAA-GTAATCGACGACGAAGCTCCGGCGCCGGG 173
||||||||| ||| |||||||| ||| ||| || |||||| || ||||||||||||||
Sbjct 63 ACCAACATGAATCTTTCTCCAACCGCTCAAGGT-CCCGACGAAGATGCTCCGGCGCCGGG 121
Query 174 AAACCAGTTTACTCAATTCGGCGCCGGTTGTTTCTGGAGCGTGGAATTAGCGTACCAGAG 233
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AAACCAGTTTGCTCAATTCGGCGCCGGTTGTTTCTGGAGCGTGGAATTAGCGTACCAGAG 181
Query 234 AGTTCCAGGAGTGACTCAAACAGAGGTTGGTTATTCTCAAGGGATCACTCACGATCCTTC 293
||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 182 AGTTCCAGGAGTGACTCAAACCGAGGTTGGTTATTCTCAAGGGATCACCCACAATCCTTC 241
Query 294 TTACAAAGATGTTTGTTCAGGTACCACGAATCATGCCGAGATTGTTCGTGTTCAATATGA 353
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 242 TTACGGAGATGTTTGTTCAGGCACCACGAATCATGCCGAGATTGTTCGTGTTCAATATGA 301
Query 354 TCCAAAAGAGTGTAGTTACCAGTCGCTGCTTGATTTGTTCTGGTCTAAGCATGATCCCAC 413
||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 302 TCCCAAAGAGTGTAGTTACGAGTCGCTTCTTGATTTGTTCTGGTCTAAGCATGATCCTAC 361
Query 414 CACTTTGAATCGGCAGGGAAATGATGTGGGAACCCAATACCGTTCAGGGATATATTTCTA 473
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 362 CACTTTGAATCGCCAGGGAAACGATGTGGGAACCCAATACCGATCAGGGATATATTTCTA 421
Query 474 CAACCCGGAGCAAGAGAAACTAGCACGCGAGTCACTGGAGCGGCACCAGCAACAAGTTGA 533
||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 422 CAACCCGGAGCAAGAGAAATTAGCACGTGAGTCACTGGAGCGTCACCAGCAACAAGTTGA 481
Query 534 CAGGAAGGTTGTGACAGAGATCTTACCGGCTAAGAAATTTTATAGAGCTGAGGAACATCA 593
||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 482 CAGGAAGATTGTGACAGAGATCTTACCGGCTAAGAAATTTTGCAGAGCCGAGGAACATCA 541
Query 594 CCAGCAATACTTGTCTAAAGGAGGGA-GGTTTGGTCTTAAGCAATCAACGGAAAAAGGCT 652
|||||||||||||||||||||||| | |||||||||| |||||||| |||| ||||||||
Sbjct 542 CCAGCAATACTTGTCTAAAGGAGG-ACGGTTTGGTCTCAAGCAATCCACGGCAAAAGGCT 600
Query 653 GCAACGACCCAATCCGCTGCTACGGGTAAAA-GCCTTGCTTCTAACC 698
|||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 601 GCAATGACCCAATCCGCTGCTACGGGTAAAAAGCCTTGGTTCTAACC 647
> Ahg940206 jgi|Araly1|940206|scaffold_600750.1
Length=652
Score = 529 bits (286), Expect = 2e-149
Identities = 522/637 (82%), Gaps = 11/637 (2%)
Strand=Plus/Plus
Query 52 CTCTCTCTACAAAATTTCTCCATGAACATACTTAACAAGCTAGGTATAGGATCAAGTAGA 111
||||||||| ||||||||| ||||||||||| |||| | | ||| | ||||||||| |
Sbjct 2 CTCTCTCTA-GAAATTTCTCAATGAACATACTCAACAGGTTGGGTTTGGGATCAAGTGGG 60
Query 112 CAAACCAACATGGATCCTTCTCCAATCGCACA-AGTAATCGACGACGAAGCTCCGGCGCC 170
|||| ||| |||||||| ||||| ||||| || |||| ||||| || |||||| | ||
Sbjct 61 CAAAACAATATGGATCCATCTCCGATCGCTCAGGGTAA-CGACGGTGACGCTCCGTCACC 119
Query 171 GGGAAACCAGTTTACTCAATTCGGCGCCGGTTGTTTCTGGAGCGTGGAATTAGCGTACCA 230
||| || |||||| ||||||||||||| || || |||||| | || || | |||| ||
Sbjct 120 GGGGAATCAGTTTGCTCAATTCGGCGCTGGATGCTTCTGGGGTGTTGAGCTGGCGTTTCA 179
Query 231 GAGAGTTCCAGGAGTGACTCAAACAGAGGTTGGTTATTCTCAAGGGATCACT-CACGATC 289
|||||| ||||| |||||||| || |||||||| ||| | ||||||||| | || |||
Sbjct 180 GAGAGTCCCAGGTGTGACTCAGACCGAGGTTGGATATACACAAGGGATC-GTAGACAATC 238
Query 290 CTTCTTACAAAGATGTTTGTTCAGGTACCACGAATCATGCCGAGATTGTTCGTGTTCAAT 349
|||| ||| ||||||||||||| || ||||||| ||||| ||| ||||| | |||||||
Sbjct 239 CTTCATACGAAGATGTTTGTTCTGGCACCACGAGCCATGCGGAGGTTGTTAGGGTTCAAT 298
Query 350 ATGATC-CAAAAGAGTGTAGTTACCAGTCGCTGCTTGATTTGTTCTGGTCTAAGCATGAT 408
|||||| | || || || || || | || |||||||||||||||||||||| |||||||
Sbjct 299 ATGATCTC-AATGATTGCAGCTATGAATCTCTGCTTGATTTGTTCTGGTCTAGGCATGAT 357
Query 409 CCCACCACTTTGAATCGGCAGGGAAATGATGTGGGAACCCAATACCGTTCAGGGATATAT 468
||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||
Sbjct 358 CCCACCACTTTGAATCGACAGGGAAATGATGTGGGAACCCAATACCGATCTGGAATATAC 417
Query 469 TTCTACA-ACCCGGAGCAAGAGAAACTAGCACGCGAGTCACTGGAGCGGCACCAGCAACA 527
||||||| |||| ||||| |||||||| || || |||||||| || || |||||||||||
Sbjct 418 TTCTACACACCC-GAGCAGGAGAAACTGGCCCGTGAGTCACTTGAACGTCACCAGCAACA 476
Query 528 AGTTGACAGGAAGGTTGTGACAGAGATCTTACCGGCTAAGAAATTTTATAGAGCTGAGGA 587
| | || |||||| | |||| |||||||| || ||||||||||| ||||||||||| ||
Sbjct 477 AATGGAAAGGAAGATCATGACTGAGATCTTGCCAGCTAAGAAATTCTATAGAGCTGAAGA 536
Query 588 ACATCACCAGCAATACTTGTCTAAA-GGAGGGAGGTTTGGTCTTAAGCAATCAACGGAAA 646
||||| || || ||| |||| ||| || ||| |||| || || |||||| || | |
Sbjct 537 GCATCATCAACAGTACCTGTC-AAAGGGTGGGCGGTTCGGCCTCGGGCAATCCACTGCCA 595
Query 647 AAGGCTGCAACGACCCAATCCGCTGCTACGGGTAAAA 683
||||||||||||||||||||||||||||||| |||||
Sbjct 596 AAGGCTGCAACGACCCAATCCGCTGCTACGGCTAAAA 632
> Ahg487579 jgi|Araly1|487579|fgenesh2_kg.6__713__AT5G07460.1
Length=963
Score = 318 bits (172), Expect = 4e-86
Identities = 443/571 (78%), Gaps = 30/571 (5%)
Strand=Plus/Plus
Query 126 TCCTTCTCCAATCGCACAAGTAATC-GACGACGAAGCTCCGGCGCCGGGAAACCAGTTTA 184
||||||||| || || |||| | | ||| |||| | |||||||||||||||| |||||
Sbjct 217 TCCTTCTCCGATAGCTCAAG-AGCCAGACAACGATGTTCCGGCGCCGGGAAACGAGTTTG 275
Query 185 CTCAATTCGGCGCCGGTTGTTTCTGGAGCGTGGA-ATTAGCGTACCAGAGAGTTCCAGGA 243
|| | |||| |||||| ||||||||| | || || || || | ||||||| | || ||
Sbjct 276 CTGAGTTCGCCGCCGGATGTTTCTGGGGAGTTGAGCTT-GCTTTCCAGAGAATCCCTGGC 334
Query 244 GTGACTC-AAACAGAGGTTGGTTATTCTCAAGGGATCACTCACGATCCTTCTTACAAAGA 302
||||| | || || || ||||| |||| |||||| ||||| |||| ||||| ||||
Sbjct 335 GTGAC-CGTGACTGAAGTCGGTTACACTCAGGGGATCTCTCACAATCCATCTTATGAAGA 393
Query 303 TGTTTGTTCAG-GTACCACGAATCATGCCG-AGATTGTTCGTGTTCAATATGATCCAAAA 360
||| ||| | | |||||||| ||||| | || ||||| | ||||| | |||||| |||
Sbjct 394 TGTCTGTAC-GAACACCACGAACCATGCAGAAG-TTGTTAGGGTTCAGTTTGATCCTAAA 451
Query 361 GAGTGTAGTTACCAGTCGCTGCTTGATTTGTTCTGGTCTAAGCATGATCCCACCACTTTG 420
||||| | ||| || |||| |||||| |||| ||||||| ||||||||| ||||| |||
Sbjct 452 GAGTGCACTTATGAGACGCTTCTTGATCTGTTTTGGTCTAGGCATGATCCTACCACCTTG 511
Query 421 AATCGGCAGGGAAATGATGTGGGAACCCAATACCGTTCAGGGATATATTTCTACAAC-CC 479
||||| |||||||| | ||||| | |||||||| ||||| ||||| |||||| || ||
Sbjct 512 AATCGTCAGGGAAAACTTTTGGGAGCACAATACCGATCAGGTATATACTTCTAC-ACACC 570
Query 480 GGAGCAAGAGAAACTAGCACGCGAGTCACTGGAGCG-GCACCAGC-AACAAGTTGACAGG 537
||||||||||||||||||||||||||| || ||| | | ||| || || | || ||
Sbjct 571 GGAGCAAGAGAAACTAGCACGCGAGTCTCTAGAGAAAG-AGCAGATAA-AACTGGA--GG 626
Query 538 A-AGG-TTGTGACAGAGATCTTACCGGCTAAGAAATTTTATAGAGCTGAGGAACATCACC 595
| | | ||||||| |||||||||||||| |||||||| || | |||||| ||| | || |
Sbjct 627 ATAAGATTGTGACTGAGATCTTACCGGCAAAGAAATTCTACAAAGCTGAAGAATACCATC 686
Query 596 AGCAATACTT-GTCTAAAGGAGGGAGGTTTGGTCTTAA-GC--AATCAACGGAAAA-AGG 650
|||||||| | ||| ||||| |||| | ||| | || || ||||| | | ||| ||
Sbjct 687 AGCAATACCTCGTC-AAAGGCGGGATGCATGG-C--AACGCTCAATCACCTGCAAAGAG- 741
Query 651 CTGCAACGACCCAATCCGCTGCTACGGGTAA 681
|||||| ||||| |||||||||||||| |||
Sbjct 742 CTGCAAGGACCCTATCCGCTGCTACGGCTAA 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5