BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61670.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496333 jgi|Araly1|496333|fgenesh2_kg.8__2149__AT5G61670.1 1781 0.0
> Ahg496333 jgi|Araly1|496333|fgenesh2_kg.8__2149__AT5G61670.1
Length=1134
Score = 1781 bits (964), Expect = 0.0
Identities = 1058/1103 (96%), Gaps = 7/1103 (1%)
Strand=Plus/Plus
Query 97 ATCGATCTTG-TGCTGAAGATATCGAAAAGATGTCATCTTTGGGTAGGATTTTGTCTGTT 155
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 ATCGATC-TGCTGCTGAAGATATCGAAAAGATGTCATCTTTGGGTAGGATTTTGTCTGTT 93
Query 156 TCCTACCCACCGGATCCGTACACTTGGCGGTTTTCACAGTATAAGCTGTCTTCTTCACTA 215
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 94 TCCTACCCACCGGATCCGTACACTCCGCGGTTTTCACAGTATAAGCTGTCTTCTTCACTA 153
Query 216 GGGCGAAATCGGAGACTCAGATGGCGATTCACGGCGTTGGATCCTGAATCTTCCTCACTC 275
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 CGGCGTACTCGGAGACTCAGATGGCGATTCACGGCGTTGGATCCTGAATCTTCCTCACTC 213
Query 276 GACTCTGAATCCTCCGCCGATAAATTCGCTTCCGGGTTTTGTATAATAGAAGGGCCTGAA 335
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 214 GACTCTGAATCCTCCGCCGATAAATTCGCTGCCGGGTTTTGTATAATAGAAGGGCCTGAA 273
Query 336 ACAGTACAGGACTTTGCCAAAATGCAATTACAAGAGATTCAAGATAACATTCGAAGCCGA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 ACAGTACAGGACTTTGCCAAAATGCAATTACAAGAGATTCAAGATAACATTCGAAGCCGA 333
Query 396 CGAAACAAGATCTTCTTGCACATGGAAGAGGTGCGGAGGCTAAGAATACAACAACGGATT 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 334 CGAAACAAGATCTTCTTGCACATGGAAGAGGTGCGGAGGCTAAGAATACAACAACGTATT 393
Query 456 AAAAACACAGAACTTGGTATCATTAACGAAGAACAAGAACATGAATTACCTAATTTCCCA 515
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 394 AAAAACACAGAACTTGGTATCATAAACGAAGAACAAGAACATGAATTACCTAATTTCCCA 453
Query 516 TCTTTTATCCCATTCTTACCTCCATTGACTGCTGCCAATTTGAAAGTCTATTACGCAACT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TCTTTTATCCCATTCTTACCTCCATTGACTGCTGCCAATTTGAAAGTCTATTACGCAACT 513
Query 576 TGTTTCTCACTCATCGCGGGGATTATCCTATTCGGTGGTCTACTAGCTCCTACTCTAGAG 635
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 514 TGTTTTTCACTCATCGCCGGGATTATCCTATTCGGTGGCCTACTAGCTCCTACTCTAGAG 573
Query 636 CTGAAGTTAGGTATAGGAGGTACATCGTATGCAGATTTCATTCAAAGCCTTCATCTACCT 695
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 574 CTGAAGTTAGGTATAGGAGGCACATCATATGCAGATTTCATTCAAAGCCTTCATCTTCCT 633
Query 696 ATGCAATTGAGTCAAGTGGACCCGATAGTAGCGTCGTTTTCTGGAGGAGCGGTTGGTGTG 755
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 634 ATGCAATTGAGTCAAGTGGATCCGATAGTAGCATCGTTTTCTGGAGGAGCGGTTGGTGTG 693
Query 756 ATTTCGGCTTTGATGGTAGTAGAAGTTAACAACGTAAAGCAGCAAGAGCACAAGAGATGC 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 ATTTCGGCTTTGATGGTAGTAGAAGTTAACAACGTAAAGCAGCAAGAGCACAAGAGATGC 753
Query 816 AAATACTGTCTAGGAACTGGGTATCTAGCATGTGCTCGTTGCTCTAGCACAGGTGCTCTT 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 AAATACTGTCTAGGAACTGGGTATCTAGCATGTGCTCGTTGCTCTAGCACAGGTGCTCTT 813
Query 876 GTTTTAACTGAACCAGTCTCAGCTATTGCTGGTGGGAATCATTCTCTATCACCGCCCAAA 935
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 814 GTTTTAACTGAACCAGTCTCAGCTATTGCTGGTATGAATCATTCTCTATCACCACCCAAA 873
Query 936 ACCGAAAGATGTTCAAACTGTTCAGGTGCCGGAAAGGTGATGTGCCCGACATGTCTGTGC 995
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 874 ACCGAAAGATGTTCAAACTGTTCAGGTGCCGGAAAGGTGATGTGCCCGACGTGTCTGTGC 933
Query 996 ACAGGAATGGCTATGGCCAGTGAGCATGATCCTCGTATCGA-CCCTTTCGATTGAATTTT 1054
||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||| |
Sbjct 934 ACAGGAATGGCTATGGCGAGTGAGCACGATCCTCGTATTGATCCCTT-CGATTGAATCTA 992
Query 1055 GCAACACATTCTACTTCCTTAGAATCTCATTCTGTCAGTGTAACTAAAAATGGTATGTAC 1114
| ||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 993 -CTACAAATTCTACTTCCTCAGAATCTCGTTCTGGCAGTGTAACTAAAAATGGTATGTAC 1051
Query 1115 TGATTAAATAATTAGAACCGCATACTTTGATCTGTATATACACACA-AT-TAAAGTTATA 1172
|||| |||||||||||| ||||| ||||| |||||||||||||||| | | ||||||||
Sbjct 1052 TGATGAAATAATTAGAATCGCATCCTTTGGTCTGTATATACACACAGAAATGAAGTTATA 1111
Query 1173 ATACAATGTTAGACATGTCTTCT 1195
||||||||||||| ||||||||
Sbjct 1112 ATACAATGTTAGATTTGTCTTCT 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5