BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61690.1
Length=2760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496336 jgi|Araly1|496336|fgenesh2_kg.8__2152__AT5G61690.1 4540 0.0
Ahg917927 jgi|Araly1|917927|Al_scaffold_0008_2678 1511 0.0
Ahg485135 jgi|Araly1|485135|fgenesh2_kg.5__1127__AT3G47730.1 998 0.0
Ahg358375 jgi|Araly1|358375|fgenesh1_pg.C_scaffold_8002162 418 1e-115
> Ahg496336 jgi|Araly1|496336|fgenesh2_kg.8__2152__AT5G61690.1
Length=2775
Score = 4540 bits (2458), Expect = 0.0
Identities = 2673/2776 (96%), Gaps = 17/2776 (1%)
Strand=Plus/Plus
Query 1 ATGATTTTGCAAGAAGGCTTGCCGCTTCTCTACCAGCAGTTCACGGCGTTGTTCGGGAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTTTGCAAGAAGGCTTGCCGCTTCTCTACCAGCAGTTCACGGCGTTGTTCGGGAAG 60
Query 61 AATCTATTGCTTTCATGGCGGAACAAGAGAGCCACGTGtcttcaaatcttctcttcattc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AATCTATTGCTTTCATGGCGGAACAAGAGAGCCACGTGTCTTCAACTCTTCTCTTCATTC 120
Query 121 ttcttcatccttctcatcttTTGTATAGAGGAAGCCATGAAAGCAAGCGACGCATCCTCG 180
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TTCTTCATCCTTGTCATCTTTTGTATAGAGGAAGCCATGAAGGCAAGCGACGCATCCTCA 180
Query 181 AGTGCGTACAAGAATATCACTGATCCTACACTATTGGTATCCCCACCGATTCTTCCTTGT 240
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ACAGCGTACAAGAATATCACTGATCCTACACTATTGGTTTCCCCACCGATTCTTCCTTGT 240
Query 241 GAGGACAAGTTCTTTGTGAAGCTTCCTTGCTATGACTTTGTGTGGAGTGGGAACAATAGT 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 241 GAGGACAAGTTCTTTGTGAAGCTTCCTTGCTATGACTTCGTGTGGAGTGGGAACCATAGT 300
Query 301 CGCCGCGTTACTGATATCGTCTCTGCAATTATGGCTAACAATCCAGGGAGACCAATTCCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCCGCGTTACTGATATCGTCTCTGCAATTATGGCTAACAATCCAGGGAGACCAATTCCA 360
Query 361 ACCAACAAGGTTCAGTCGTTCAAGGAGCCTGATGAGGTAGATACATGGCTTCTGTCACAT 420
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 ACCAACAAGGTTCAATCGTTCAAGGAGCCTGATGAGGTAGATGCATGGCTTCTGTCACAT 420
Query 421 CCCTTGCAAGTTCCAGGAGCTTTGCATTTTGTGGAAAGGAATGCTTCAGTAATCAGCTAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCCTTGCAAGTTCCAGGAGCTTTGCATTTTGTGGAAAGGAATGCTTCAGTAATCAGCTAT 480
Query 481 GGTGTTCAAACAAATTCTTCATCGGAGAGTAAACGTGGTCAGACTGAAGATCCTACGTTT 540
||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GGTATTCAAACAAATTCTTCCTCGGAGAGAAAACGTGGTCAGACTGAAGATCCTACGTTT 540
Query 541 AAGTTCCTTGTTCCTCTTCAAGTCGCTGCAGAGCGTGAAATCGCAAGGTCTTTACTTGGA 600
||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 541 AAGTTTCTTGTTCCTCTTCAAGTCGCTGCAGAGCGTGAAATCGCAAGGTCCTTAATTGGA 600
Query 601 GATCCAAATTTTGGTTGGGGTTTGGGATTTAAGGAATTTGCAAGACCAGCTATTATAACT 660
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 GATCCAGATTTTGGTTGGGGTTTGGGATTTAAGGAATTTGCACGACCAGCTATTATAACT 660
Query 661 GAAACTACCTCTGCACTCTCAGTCATGGGACCAGTGTTCTTTCTTGCTTTCTCCATGTTT 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GAAACTACCTCTGCACTCTCAGTCATGGGACCAGTGTTCTTCCTTGCTTTCTCCATGTTT 720
Query 721 GGTTTTGTTCTCCAACTCGGTGCCCTGGTCACCGAGAAAGAGCTAAAACTTCGGCAGGCA 780
||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct 721 GGTTTTGTTCTCCAACTCGGTTCCCTGGTTACCGAGAAAGAGCTCAAACTTCGGCAGGCA 780
Query 781 ATGACAATGATGGGTGTTTATGATTCTGCATATTGGTTGTCATGGCTAACCTGGGAAGGA 840
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 ATGACAATGATGGGTGTTTATGATTCTGCATATTGGTTGTCATGGCTCTTATGGGAAGGA 840
Query 841 ATCCTTACCCTTGTCTCCTCACTTTTCTTGGTCCTCTTTGGAATGATATTCCGctttgat 900
|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 841 ATCCTTACTTTTGTCTCCTCACTTTTATTGGTCCTCTTTGGAATGATATTCCGGTTTGAT 900
Query 901 tttttcttgaagaacagttttgttcttgtcttcctacttttcttgctttttcagtttAAT 960
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 TTTTTCTTGAAGAACAGTTTTGTTCTTGTCTTCCTACTTTTCTTGCTCTTTCAGTTTAAT 960
Query 961 ATGATTGGCCTAGCATTTGCGCTATCATCTATCATTAGCAAATCATCTTCGGCAACAACT 1020
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 961 ATGATTGGCCTAGCATTTGCGCTATCATCTATTATTAGCAAATCATCTTCGGCAACAACC 1020
Query 1021 GTCGGTTTCCTTGTGTTTTTGATTGGTTTTATAACACAGTTTGTATCAGCTACTGGATTC 1080
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1021 GTCGGTTTCCTTGTGTTTTTGATTGGTTTTATAACACAGATTGTATCAGCTACTGGATTC 1080
Query 1081 CCTTATTCCAGCTCATATGCAGTTTCTCGCCGGGTGATGTGGTCTCTTTTTCCACCCAAC 1140
|||||||||||| | ||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1081 CCTTATTCCAGCGCTTATGCGGTTTCTCGTCGGGTGATGTGGTCTCTTTTTCCACCAAAC 1140
Query 1141 ACTTTTTCTGCGGGACTTAAGCTTCTTCTTGATGCAACCTCAACTCCCAAAAGCTCTGGA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ACTTTTTCTGCGGGACTTAAGCTTCTTCTTGATGCAACCTCAACTCCCAAAAGCTCTGGA 1200
Query 1201 ATCAGTTGGAGTAATAGAGCCAACATTATCTACCAGTGGCTCCTTGGGACATTCCTATTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATCAGTTGGAGTAATAGAGCCAACATTATCTACCAGTGGCTCCTTGGGACATTCCTATTC 1260
Query 1261 TGGTTTGTTCTGGCTATCTACTTTGACAATATTATTCCCAACGCCTCCGGTGTAAGAAAA 1320
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1261 TGGTTTGTTCTGGCTATCTACTTTGACAATATTATTCCCAACTCGTCCGGTGTAAGAAAA 1320
Query 1321 CCGATCTTCTACTTTTTAGCACCTGGTTATTGGACTGGCAAAGGAGGCAACAAAGTGGAA 1380
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1321 CCGATCTTCTACTTTTTAGCACCTGGTTATTGGACTGGCAAAGGGGGCAACAAAGTGGAA 1380
Query 1381 GTTCCACTAGTAGAGCATAATACGCCAAATGACAAAGATGTGCTTGAAGAAGAGACAGAA 1440
||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1381 GTTCCACCCGTGGAGCATAATACGCCAGATGACAAAGATGTGCTTGAAGAAGAGACAGAA 1440
Query 1441 GTTAAACAACAAGCAATGGACGGAATAGCTGATCCTAACATTGCAGTTCAAATACATGGT 1500
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 1441 GTTAAACAACAAGCAATGGATGGAATAGTTGATCCTAACATTGCAGTTCAGATACATGGT 1500
Query 1501 CTTGCAAAGACATATCCTGGAACTACAAAGCTTGGATGCTGCAAATGCACCAAAACTTCG 1560
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CTTGCAAAGACATATCCTGGGACTACAAAGCTTGGATGCTGCAAATGCACCAAAACTTCG 1560
Query 1561 CCTTTTCATGCTGTAAAGGGTTTGTGGATGAATATTGCCAAAGATCAGTTGTTTTGTCTT 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CCTTTTCATGCTGTAAAGGGTTTGTGGATGAATATTGCCAAAGATCAGTTGTTTTGTCTT 1620
Query 1621 CTTGGACCTAATGGCGCGGGGAAAACAACTACTATTAGTTGTTTGACTGGCATAAATCCA 1680
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CTTGGACCTAATGGCGCGGGAAAAACAACTACTATTAGTTGTTTGACTGGCATAAATCCA 1680
Query 1681 GTTACTGGTGGTGATGCTCTTATATATGGAGACTCCATAAGAAGTTCTGTGGGTATATCT 1740
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1681 GTTACTGGTGGTGATGCTCTTATATATGGAGACTCCATAAGAAGTTCCGTGGGTATGTCT 1740
Query 1741 AACATTCGCAAAATGATAGGAGTATGTCCTCAGTTTGATATTCTTTGGGATGCTTTGTCT 1800
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1741 AACATTCGTAAAATGATAGGAGTGTGTCCTCAGTTTGATATTCTTTGGGATGCTTTGTCT 1800
Query 1801 AGTGAACAACACCTCCACCTCTTTGCTAGCATCAAAGGGTTGCCACCAGCATCGATCAAA 1860
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1801 AGTGAAGAACACCTCCACCTCTTTGCTAGCATCAAAGGATTGCCACCAGCATCGATCAAA 1860
Query 1861 TCGACTGCTGAGAAGTTACTGGCGGATGTAAAACTGACAGGAGCGGCGAAAGTTAGAGCA 1920
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1861 TCGACTGCTGAGAAGTTACTGGCGGATGTAAAACTGACAGGAGCTGCGAAAGTTAGAGCA 1920
Query 1921 GGAAGTTACAGTGGTGGAATGAAACGTCGACTCAGTGTTGCGGTAGCACTTATCGGCGAT 1980
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1921 GGAAGTTATAGTGGTGGAATGAAACGTCGACTCAGTGTTGCGGTAGCACTTATCGGTGAT 1980
Query 1981 CCCAAGCTGACTACTGGCATGGACCCTATCACGAGGAGACATGTGTGGGACATTATACAA 2040
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 CCCAAGCTGACAACTGGCATGGACCCTATCACGAGGAGACATGTGTGGGACATTATACAA 2040
Query 2041 GAGTCAAAGAAAGGTCGTGCCATCATACTAACGACGCATTCTATGGAGGAAGCTGATATT 2100
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2041 GAGTCAAAGAAAGGTCGTGCCATCATACTAACGACGCATTCTATGGAAGAAGCTGATATT 2100
Query 2101 TTAAGTGATCGAATAGGGATCATGGCTAAAGGCAGGCTCCGCTGCATTGGAACCTCAATC 2160
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2101 TTAAGTGATCGAATAGGGATCATGGCTAAAGGCAGGCTCCGCTGCATTGGGACCTCAATC 2160
Query 2161 AGGTTAAAATCTCGCTTTGGCACGGGATTTGTTGCTACCGTTAGCTTCATCGAAAACAAA 2220
||||||||||| |||||||| || ||||||||||||| ||||||||||||||||| ||||
Sbjct 2161 AGGTTAAAATCCCGCTTTGGTACAGGATTTGTTGCTAACGTTAGCTTCATCGAAAGCAAA 2220
Query 2221 AATGACAATAACATCGGTGTTGGAGCTTCGCACGAGCCATTGAAGAAATTTTTTAAAGAG 2280
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2221 AATGACAATAACATCGGTGTTGGAGCTTCGCACGAGCCATTGAAGAAATTCTTTAAAGAG 2280
Query 2281 CATCTGAAAGTTGAGCCAACAGAAGAAAACAAAGCTTTCATGACTTTTGTTATCCCACAC 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 CATCTGAAAGTTGAGCCAACAGAAGAAAACAAAGCTTTCATGACTTTTGTTATCCCACAC 2340
Query 2341 GACAAAGAAAATCTTTTGACG---------------CTACAAAACAGAGAATCTGAATTT 2385
||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2341 GACAAAGAAAACCTTTTGACGGGGTTTTTTGAGGAGCTACAAAACAGAGAATCTGAATTT 2400
Query 2386 GGAATCTCGGACATCCAACTTGGTCTAGCGACTCTTGAAGAAGTGTTTCTCAACATCGCA 2445
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2401 GGAATCTCGGACATCCAACTCGGTCTTGCGACTCTTGAAGAAGTGTTTCTCAACATCGCA 2460
Query 2446 AGACAGGCTGAACTAGAAAGCGCAACAGCTGAAGGAAACATGGTCACTTTGGAGTTAGCA 2505
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 2461 AGACAGGCTGAACTAGAAAGCGCAACAGCCGAAGGAAACATGGTCACTCTGGAGTTAAAA 2520
Query 2506 TCAGGCATCTCACTAGAGATACCTGTGGGAGCAAGATTTGTTGGGATCCCTGATACAGAA 2565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2521 TCAGGCATCTCACTAGAGATACCTGTGGGAGCAAGATTTGTTGGGATCCCTGATACAGAA 2580
Query 2566 AACGCAGAGAATCCAAGTGGAGTAATGGTGGAAGTGTACTGGCAACAAGACGGCTCGGGG 2625
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2581 AACGCAGAGAATCCAAGTGGGGTAATGGTGGAAGTGTACTGGCAACAAGACGGGTCGGGA 2640
Query 2626 TCGATGTGCATCTCTGGACACTCATCAGAGATGCGGGTACCACAGAATGTTCCGGTGACA 2685
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2641 TCGATGTGCATCTCAGGACACTCATCAGAGATGCGGGTGCCACAGAATGTTCCGGTGACA 2700
Query 2686 CGTCCACCATCACCAAATGCATTAGGACATAAA-AGCCTACGACAAGGGGTTCGTGGTAT 2744
||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||| |
Sbjct 2701 CGTCCACCATCGCCAGATGCATTAGGACATAAAGA-CCTACGACAAGGGGTTCGTGGTGT 2759
Query 2745 CGTGATCGATTTATGA 2760
|||||| |||||||||
Sbjct 2760 CGTGATTGATTTATGA 2775
> Ahg917927 jgi|Araly1|917927|Al_scaffold_0008_2678
Length=2865
Score = 1511 bits (818), Expect = 0.0
Identities = 1199/1376 (87%), Gaps = 53/1376 (4%)
Strand=Plus/Plus
Query 1380 AGTTCCACTA-GTAGAGCATAATACGCCAAATGACAAAGATGTGCTTGAAGAAGAGACAG 1438
|||||||| | |||||||||| ||| ||| | ||| |||||||||||||||| ||||
Sbjct 1452 AGTTCCAC-ATGTAGAGCATATTACACCAGAGGACGAAGATGTGCTTGAAGAGGAGATTT 1510
Query 1439 AAGTTAAACAACAAGCAATGGACGGAATAGCTGATCCTAACATTGCAGTTCAAATACATG 1498
||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||
Sbjct 1511 TAGTTAAACAACAAGCAATGGATGGAATAGTTGATCCTAACATTGCAGTTCAGATACATG 1570
Query 1499 GTCTTGCAAAGACATATCCTGGAACTACAAAGCTTGGATGCTGCAAATGCACCAAAACTT 1558
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1571 GTCTTGCAAAGACATATCCTGGGACTACAAAGCTTGGATGCTGCAAATGCACCAAAACTT 1630
Query 1559 CGCCTTTTCATGCTGTAAAGGGTTTGTGGATGAATATTGCCAAAGATCAGTTGTTTTGTC 1618
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1631 CGCCTTTTCATGCTGTAAAGGGTTTGTGGCTGAATATTGCCAAAGATCAGTTGTTTTGTC 1690
Query 1619 TTCTTGGACCTAATGGCGCGGGGAAAACAACTACTATTAGTTGTTTGACTGGCATAAATC 1678
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1691 TTCTTGGACCCAATGGCGCTGGGAAAACAACTACGATTAGTTGTTTGACTGGCATAAATC 1750
Query 1679 CAGTTACTGGTGGTGATGCTCTTATATATGGAGACTCCATAAGAAGTTCTGTGGGTATAT 1738
|||| |||||||| ||||| | || || ||| | ||||||||||| ||||| ||||| |
Sbjct 1751 CAGTCACTGGTGGGGATGCAATAATTTACGGAAATTCCATAAGAAGCTCTGTTGGTATGT 1810
Query 1739 CTAACATTCGCAAAATGATAGGAGTATGTCCTCAGTTTGATATTCTTTGGGATGCTTTGT 1798
| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1811 CCAACATTCGTAAAATGATAGGAGTTTGTCCTCAGTTTGATATTCTTTGGGATGCTTTGT 1870
Query 1799 CTAGTGAACAACACCTCCACCTCTTTGCTAGCATCAAAGGGTTGCCACCAGCATCGATCA 1858
|||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1871 CTAGTGAAGAGCACCTCCACCTCTTTGCTAGCATCAAAGGGTTACCACCAGCATCGATCA 1930
Query 1859 AATCGACTGCTGAGAAGTTACTGGCGGATGTAAAACTGACAGGAGCGGCGAAAGTTAGAG 1918
|||||| ||| | ||||||||||| |||||||| || | || |||||||||| ||||||
Sbjct 1931 AATCGATTGCAGTCAAGTTACTGGCAGATGTAAAGCTAATAGAAGCGGCGAAAATTAGAG 1990
Query 1919 CAGGAAGTTACAGTGGTGGAATGAAACGTCGACTCAGTGTTGCGGTAGCACTTATCGGCG 1978
|||||||||||||||||||||||||||||||||| || ||||| ||||||| || || |
Sbjct 1991 CAGGAAGTTACAGTGGTGGAATGAAACGTCGACTAAGCGTTGCAATAGCACTCATTGGTG 2050
Query 1979 ATCCCAAGCTGA-----CTAC-TG----G-CA-----T--GGACCCTATCACGAGGAGAC 2020
||||||||||| ||| || | || | ||||||||||||||| ||||
Sbjct 2051 ATCCCAAGCTGGTTTTTCTAGATGAACCGACAACGGGTATGGACCCTATCACGAGAAGAC 2110
Query 2021 ATGTGTGGGACATTATACAAGAGTCAAAGAAAGGTCGTGCCATCATACTAACGACGCATT 2080
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2111 ATGTGTGGGACATTATACAAGAATCAAAGAAAGGTCGTGCAATCATACTAACGACGCATT 2170
Query 2081 CTATGGAGGAAGCTGATATTTTAAGTGATCGAATAGGGATCATGGCTAAAGGCAGGCTCC 2140
||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 2171 CTATGGAAGAAGCTGATATTTTAGGTGACCGAATAGGGATCATGGCTAAAGGCAGGCTCC 2230
Query 2141 GCTGCATTGGAACCTCAATCAGGTTAAAATCTCGCTTTGGCACGGGATTTGTTGCTACCG 2200
|||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||| |
Sbjct 2231 GCTGCATTGGAACCTCAATCAGGTTAAAATCTCGCTTTGGAACGGGTTTTATTACTACGG 2290
Query 2201 TTAGCTTCATCGAAAACAAAAATGACAATAACATCGGTGTTGGAGCTTCGCACGAGCCAT 2260
|||||||| |||||||||||| |||| | | | | || | |||| | ||||||||
Sbjct 2291 TTAGCTTCCCCGAAAACAAAAAAGACAGTG-C-TAGAAGT---A-CTTCACCCGAGCCAT 2344
Query 2261 TGAAGAA-ATTTTTTAAAGAGCATCTGAAAGTTGAGCCAACAGAAGAAAACAAAGCTTTC 2319
|||| || ||| ||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2345 TGAA-AAGATTCTTTAAGGAGCATCTAAAAGTTGAGCCAACAGAAGAAAGCAAAGCTTTC 2403
Query 2320 ATGACTTTTGTTATCCCACACGACAAAGAA-AATCTTTTGACGC--T---------A-C- 2365
||||||||||||||||||||||||||||| || ||||||||| | | |
Sbjct 2404 ATGACTTTTGTTATCCCACACGACAAAGAGCAA-CTTTTGACGGGGTTTTTCGCGGAGCT 2462
Query 2366 A-AA-ACAGAGAATCTGAATTTGGAATCTCGGACATCCAACTTGGTCTAGCGACTCTTGA 2423
| || | ||||||||||||||||| ||||| ||||| || || ||||| || ||||||||
Sbjct 2463 ACAAGATAGAGAATCTGAATTTGGCATCTCAGACATTCAGCTCGGTCTTGCCACTCTTGA 2522
Query 2424 AGAAGTGTTTCTCAACATCGCAAGACAG-GCTGAACTAGAAAGCGCAACAGCTGAAGGAA 2482
|||||||||| | ||||| || |||| | |||||||||||||||||||| | ||||||||
Sbjct 2523 AGAAGTGTTTTTGAACATAGCTAGAC-GTGCTGAACTAGAAAGCGCAACTGTTGAAGGAA 2581
Query 2483 ACATGGTCACTTTGGAGTTAGCATCAGGCATCTCACTAGAGATACCTGTGGGAGCAAGAT 2542
|||||||||| | ||||||| |||||||||| || | ||||||||||||||||||||||
Sbjct 2582 CCATGGTCACTCTCGAGTTAGAATCAGGCATCGCAGTCGAGATACCTGTGGGAGCAAGAT 2641
Query 2543 TTGTTGGGATCCCTG-ATACAGAAAACGCAGAGAATCCAAGTGGAGTAATGGTGGAAGTG 2601
|||| || ||||||| | ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 2642 TTGTAGGTATCCCTGGA-ACAGAAAACGCAGAGAATCCAAGAGGAATAATGGTGGAAGTG 2700
Query 2602 TACTGGCAACAAGACGGCTCGGGGTCGATGTGCATCTCTGGACACTCATCAGAGATGCGG 2661
|| |||||||||||||| || || ||||||||||||||||||||||| | |||||||||
Sbjct 2701 TATTGGCAACAAGACGGGTCAGGATCGATGTGCATCTCTGGACACTCGCCGGAGATGCGG 2760
Query 2662 GTACCACAGAATGT-TCCGGTGACACGTCCACCATCACCA-AATGCATTAGGACAT 2715
||||| ||||||| || | ||| | | ||||||| || || | ||||||||||
Sbjct 2761 ATACCAGAGAATGTCTCAG-TGATATATGAACCATCATCACAA-GTATTAGGACAT 2814
Score = 1258 bits (681), Expect = 0.0
Identities = 1060/1240 (85%), Gaps = 37/1240 (3%)
Strand=Plus/Plus
Query 1 ATGATTTTGCAAGAAGGCTTGCCGC-TTCTCTACCAGCAGTTCACGGCGTTGTTCGGGAA 59
|||| | ||| |||||||||||||| || || | ||||| ||||| || |||||| |||
Sbjct 1 ATGACTCTGCGAGAAGGCTTGCCGCTTTTTC-ATCAGCAATTCACAGCTTTGTTCAAGAA 59
Query 60 GAATCTATTGCTTTCATGGCGGAACAAGAGAGCCACGTGtcttcaaatcttctcttcatt 119
||||||| ||||||||||||| ||||||| ||||||||||||||| |||||||||| ||
Sbjct 60 GAATCTACTGCTTTCATGGCGAAACAAGACAGCCACGTGTCTTCATCTCTTCTCTTCGTT 119
Query 120 cttcttcatccttctcatcttTTGTATAGAGGAAGCCATGAAAGCAAGCGACG-CATCCT 178
|||||||||||| |||||||| | ||| |||||| | | ||||| ||||| | | |||
Sbjct 120 CTTCTTCATCCTCCTCATCTTCTCTATCGAGGAATCTACCAAAGCGAGCGA-GTTAACCT 178
Query 179 CGAGTGCGTACAAG-AATATCACTGATCCTACA-CTATTGGTATCCCCACCGATTCTTCC 236
||| | || || || ||| |||| ||||||| | | ||| || || | || |||| ||
Sbjct 179 CGACTACGCAC-AGAAATGTCACAGATCCTAAAGC-ATTAGTCTCTCTTCCAATTCCGCC 236
Query 237 TTGTGAGGACAAGTTCTTT-GTGAAG-CTTCCTTGCTATGACTTTGTGTGGAGTGGGAAC 294
|||||||| ||||| ||| ||| || ||||| || | |||||| |||||||||||||||
Sbjct 237 ATGTGAGGATAAGTT-TTTCGTG-AGACTTCCATGTTTTGACTTCGTGTGGAGTGGGAAC 294
Query 295 AATAGTCGCCGCGTTACTGATATCGTCTCTGCAATTATGGCTAACAATCCAGGGA-GACC 353
| || || || || ||||| || ||||||||||||||||||||||||||| ||| ||||
Sbjct 295 CAGAGCCGTCGTGTGACTGACATTGTCTCTGCAATTATGGCTAACAATCCA-GGACGACC 353
Query 354 AATTCCAACCAACAAGGTTCAGTCGTTCAAGGAGCCTGATGAGGTAGATACATGGCTTCT 413
|||||| | ||| |||||||| || || || ||||||| || |||||| ||||| || |
Sbjct 354 AATTCCGAGCAATAAGGTTCAATCATTTAAAAAGCCTGAGGAAGTAGATGCATGGTTTAT 413
Query 414 GTCACATCCCTTGCAAGTTCCAGGAGCTTTGCATTTTGTGGAAAGGAATGCTTCAGTAAT 473
||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 414 GTCACATCCATTGCAAGTACCAGGAGCTTTGCATTTTGTGGAAAAGAATGCTACAGTGAT 473
Query 474 CAGCTATGGTGTTCAAACAAATTCTTCATCGGAGAGTAAACGTGGTCAGAC-TGAAGATC 532
|||||||| |||||||||| ||||||||||||| |||||||||| | | ||||||||
Sbjct 474 AAGCTATGGAATTCAAACAAACTCTTCATCGGAGAAAAAACGTGGTC-GGCGTGAAGATC 532
Query 533 CTACGTTTAAGTTCCTTGTTCCTCTTCAAGTCGCTGCAGAGCGTGAAATCGCAAGGTCTT 592
||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 533 CTACGTTTAAGTTCCTTGTTCCTCTTCAAATCGCTGCAGAGCGCGAAATAGCAAGGTCTT 592
Query 593 TACTTGGAGATCCAAATTTTGGTTGGGGTT-TGGGATTTAAGGAATTTGCAAGACCAGCT 651
|| ||||||||||||| ||| ||||||||| | ||||||||||||||||| | || |
Sbjct 593 TAATTGGAGATCCAAAGTTTAGTTGGGGTTCT-GGATTTAAGGAATTTGCGCGTCCGGGG 651
Query 652 ATT-ATAACTG-A--AACTACCTCTGCACTCTCAGTC--ATGGGACCAGTGTTCTTTCTT 705
||| | || | ||| || |||||| | | | || |||||||||||||||||||||
Sbjct 652 ATTGGT-GGTGTAGTAACCACTTCTGCA-TTTTA-TCTTATGGGACCAGTGTTCTTTCTT 708
Query 706 GCTTTCTCCATGTTTGGTTTTGTTCTCCAACTCGGTGCCCTGGTCACCGAGAAAGAGCTA 765
|||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 709 GCTTTCTCCATGTTTGGTTTTGTTCTCCAACTCGGTTCTGTGGTTACCGAGAAAGAGCTA 768
Query 766 AAACTTCG-GCAGGCAATGACAATGATGGGTGTTTATGATTCTGCATATTGGTTGTCATG 824
|||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 769 AAACTTCGCG-AGGCAATGACAACGATGGGTGTTTATGATTCTGCATATTGGTTGTCATG 827
Query 825 GCTAACCTGGGAAGGAATCCTTACCCTTGTCTCCTCACTTTTCTTGGTCCTCTTTGGAAT 884
||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 828 GCTCTTATGGGAAGGAATCCTTACCTTTGTCTCCTCACTCTTCTTGGTCCTCTTTGGAAT 887
Query 885 GATATTCC-Gctttgattttttcttgaagaacagttttgttcttgtcttcctacttttct 943
||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GATGTTCCAG-TTTGATTTTTTCTTGAAGAACAGTTTTGTTCTTGTCTTCCTACTTTTCT 946
Query 944 tgctttttcagtttAATATGATTGGCCTAGCATTTGCGCTATCATCTATCATTAGCAAAT 1003
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 947 TTCTTTTTCAGTTTAATATGATTGGCCTAGCATTCGCGCTATCCTCTATCATTAGCAAAT 1006
Query 1004 CATCTTCGGCAACAACTGTCGGTTTCCTTGTGTTTTTGATTGGTTTTATAACACAGTTTG 1063
||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| |||
Sbjct 1007 CATCTTCGGCAACAACTGTTGGTTTCCTTGTGTTTCTGGTTGGTTTTATAACACAGATTG 1066
Query 1064 TATCAGCTACTGGATTCCCTTATTCCAGCTCATATGCAGTTTC-TCGCCGGGTGATGTGG 1122
|| |||||||||||||||||||||| ||||||||| | | || | |||| ||||| |||
Sbjct 1067 TAACAGCTACTGGATTCCCTTATTCGAGCTCATATTC-GATTGGTAGCCGTGTGATTTGG 1125
Query 1123 TCTCTTTTTCCACCCAACACTTTTTCTGCGGGACTTAAGCTTCTTCTTGATGCAACCTCA 1182
|| || |||||||| || || ||||||||||| || |||| |||||||| || || |||
Sbjct 1126 TCACTCTTTCCACCGAATACCTTTTCTGCGGGTCTGCAGCTGCTTCTTGAGGCGACATCA 1185
Query 1183 ACTCCCAAAAGCT-CTGGAATCAGTTGGAGT-AATAGAGC 1220
||||| | | | ||||||| ||||||||| || |||||
Sbjct 1186 TCTCCCGGA-GATTCTGGAATTAGTTGGAGTGAA-AGAGC 1223
> Ahg485135 jgi|Araly1|485135|fgenesh2_kg.5__1127__AT3G47730.1
Length=3133
Score = 998 bits (540), Expect = 0.0
Identities = 1078/1327 (81%), Gaps = 79/1327 (6%)
Strand=Plus/Plus
Query 1401 TACGCCAAATGACAAAGATGTGCTTGAAGAAGAGACAGAAGTTAAACAACAAGCAATGGA 1460
||| ||| ||||| ||||||| |||||||| || || |||||||||||| |||||||
Sbjct 1471 TACCCCAGATGACGAAGATGTCCTTGAAGAGGAAACTTTAGTTAAACAACATTCAATGGA 1530
Query 1461 CGGAATAGCTGATCCTAACATTGCAGTTCAAATACATGGTCTTGCAAAGACATATCCTGG 1520
|| ||| |||||| ||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1531 TGGTTTAGTTGATCCCAACATTGCAGTTCAAATACGTGGTCTTGCAAAGACTTATCCTGG 1590
Query 1521 AACTACAAAGCTTGGATGCTGCAAATGCACCAAAACTTCGCCTTTTCATGCTGTAAAGGG 1580
|| || || |||||||||||||||||| |||||| | |||||||||||| | |||||
Sbjct 1591 GACGACGAATTTTGGATGCTGCAAATGCAAGAAAACTCCCCCTTTTCATGCTCTGAAGGG 1650
Query 1581 TTTGTGGATGAATATTGCCAAAGATCAGTTGTTTTGTCTTCTTGGACCTAATGGCGCGGG 1640
||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||
Sbjct 1651 GTTGTGGATGAATATTGCCAAAGATCAGTTATTCTGTCTTCTTGGACCCAATGGCGCAGG 1710
Query 1641 GAAAACAACTACTATTAGTTGTTTGACTGGCATAAATCCAGTTACTGGTGGTGATGCTCT 1700
|||||||||||||| | ||||||||| ||| || ||||||||||||||||||||| ||
Sbjct 1711 AAAAACAACTACTATCAATTGTTTGACAGGCTTATTTCCAGTTACTGGTGGTGATGCACT 1770
Query 1701 TATATATGGAGACTCCATAAGAAGTTCTGTGGGTATATCTAACATTCGCAAAATGATAGG 1760
|| |||||| | || |||||||| ||||| ||||| || ||||| || |||||||| ||
Sbjct 1771 AATTTATGGAAATTCTATAAGAAGCTCTGTTGGTATGTCCAACATCCGTAAAATGATTGG 1830
Query 1761 AGTATGTCCTCAGTTTGATATTCTTTGGGATGCTTTGTCTAGTGAACAACACCTCCACCT 1820
||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||
Sbjct 1831 AGTTTGTCCTCAGTTTGATATTCTTTGGGATGCTTTGTCTGGTGAAGAACACCTCAAACT 1890
Query 1821 CTTTGCTAGCATCAAAGGGTTGCCACCAGCATCGATCAAATCGACTGCT-GAGAAGTTAC 1879
||||||||||||||||||||||||||| |||||||||| |||| || | ||||||| ||
Sbjct 1891 CTTTGCTAGCATCAAAGGGTTGCCACCTTCATCGATCAACTCGA-TGGTTGAGAAGTCAC 1949
Query 1880 TGGCGGATGTAAAACTGACAGGAGC-GGCGAAAGTTAGAGCAGGAAGTTACAGTGGTGGA 1938
| ||||| ||||||||||||| ||| || |||| | || ||||||||||||||||| |||
Sbjct 1950 TAGCGGAGGTAAAACTGACAGAAGCAGG-GAAAATCAGGGCAGGAAGTTACAGTGGAGGA 2008
Query 1939 ATGAAACGTCGACTCAGTGTTGCGGTAGCACTTATCGGCGATCCCAAGCTGA-CT----- 1992
||||| || |||||||||||||| || |||| || || ||||| |||||| ||
Sbjct 2009 ATGAAGCGCCGACTCAGTGTTGCAGTTTCACTCATTGGTGATCCAAAGCTGGTCTTCCTG 2068
Query 1993 -AC--------T---GGCATGGACCCTATCACGAGGAGACATGTGTGGGACATTATACAA 2040
|| | |||||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct 2069 GACGAACCGACTACAGGCATGGATCCGATCACCAGGAGGCATGTGTGGGATATTATACAG 2128
Query 2041 GAGTCAAAGAAAGGTCGTGCCATCATACTAACGACGCATTCTATGGAGGAAGCTGATATT 2100
|| | |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 2129 GAAACCAAGAAAGGCCGTGCCATTATACTAACGACACATTCGATGGAGGAAGCTGATATA 2188
Query 2101 TTAAGTGATCGAATAGGGATCATGGCTAAAGGCAGGCTCCGCTGCATTGGAACCTCAATC 2160
||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| |||
Sbjct 2189 TTAAGTGATCGGATAGGGATAATGGCTAAGGGTAGGCTCCGCTGCATTGGAACCTCGATC 2248
Query 2161 AGGTTAAAATCTCGCTTTGGCACGGGATTTGTTGCTACCGTTAGCTTCATCGAAA--A-C 2217
|| || ||||| ||||||||||| || ||| |||||| | | ||||| | |||| | |
Sbjct 2249 AGATTGAAATCCCGCTTTGGCACAGGTTTTATTGCTAACATCAGCTTTGTTGAAAGCAAC 2308
Query 2218 AA--AA-A------TGACAATAAC-A---TCGGTGT---TGGAGCT-TCG---CACG--A 2255
|| || | || ||||||| | | || | ||| ||| ||| |||| |
Sbjct 2309 AACCAAGAAAACAATGGCAATAACCACAATGGG-GAAAATGGTGCTGTCGATTCACGCGA 2367
Query 2256 GCCATTGAAGAAATTTTTTAAAGAGCATCTGAAAGTTGAGCCAACAGAAGAAAACAAAGC 2315
|||| |||||||||| |||||||| ||||| ||||| | |||| |||||||||||| ||
Sbjct 2368 GCCAGTGAAGAAATTCTTTAAAGATCATCTCAAAGTCAAACCAATAGAAGAAAACAAGGC 2427
Query 2316 TTTCATGACTTTTGTTATCCCACACGACAAAGAAAATCTTTTGAC-G-CTA---C----A 2366
||||||||||||||||| |||||||||||||| ||||||||||| | || | |
Sbjct 2428 CTTCATGACTTTTGTTATACCACACGACAAAGAGAATCTTTTGACAGGCTTTTTCGCTGA 2487
Query 2367 -----AA-ACAGAGAATCTGAATTTGGAATCTCGGACATCCAACTTGGTCTAGCGACTCT 2420
|| |||||||| |||||||||||||| || |||||||||||||| || |||||
Sbjct 2488 GCTTCAAGACAGAGAAGAAGAATTTGGAATCTCAGATATCCAACTTGGTCTCGCAACTCT 2547
Query 2421 TGAAGAAGTGTTTCTCAACATCGCAAGACAGGCTGAACTAGAAAGCGCAACAGCTGAAGG 2480
||||||||| ||| | ||||| |||||| | |||||||| |||||||| | | ||| ||
Sbjct 2548 TGAAGAAGTCTTTTTGAACATAGCAAGAAAAGCTGAACTCGAAAGCGCTGCGGTTGATGG 2607
Query 2481 AAACA-TGGTCACTTTGGAGT-TAGCATCAGGCATC-TCACTAGAGATACCTGTGGGAGC 2537
|| || |||||||| | || | || |||| || || ||| | |||||||| ||||| ||
Sbjct 2608 AA-CAATGGTCACTCTCGA-TCTAACATCTGGT-TCCTCAGTTGAGATACCGGTGGGGGC 2664
Query 2538 AAGATTTGTTGGGATCCCTG-ATACAGAAAAC-GCAGAGAATCCAAGTGGAGTAATGGTG 2595
||||||| ||||||| || | | |||||| | |||||||||||| | ||| | ||||||
Sbjct 2665 AAGATTTATTGGGATACCGGGA-ACAGAAT-CTGCAGAGAATCCACGAGGAATCATGGTG 2722
Query 2596 GAAGTGTACTGGCAACAAGACG-GCTCGGGGTCGAT-GTGCATCTCTGGACACTC-ATCA 2652
|||||||| ||||||||||||| | || || || || ||||||||| |||||||| | |
Sbjct 2723 GAAGTGTATTGGCAACAAGACGAG-TCAGGTTC-ATTGTGCATCTCAGGACACTCCA-CG 2779
Query 2653 GAGATGC 2659
|||||||
Sbjct 2780 GAGATGC 2786
> Ahg358375 jgi|Araly1|358375|fgenesh1_pg.C_scaffold_8002162
Length=507
Score = 418 bits (226), Expect = 1e-115
Identities = 383/455 (84%), Gaps = 25/455 (5%)
Strand=Plus/Plus
Query 2281 CATCTGAAAGTTGAGCCAACAGAAGAAAACAAAGCTTTCATGACTTTTGTTATCCCACAC 2340
||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 7 CATCTAAAAGTTGAGCCGACAGAAGAAAGCAAAGCTTTCATGACTTTTGTTATCCCACAC 66
Query 2341 GACAAAGAA-AATCTTTTGACGC--T---------A-C-A-AA-ACAGAGAATCTGAATT 2384
|||||||| || ||||||||| | | | | || | ||||||||||||||
Sbjct 67 GACAAAGAGCAA-CTTTTGACGGGGTTTTTCGGGGAGCTACAAGATAGAGAATCTGAATT 125
Query 2385 TGGAATCTCGGACATCCAACTTGGTCTAGCGACTCTTGAAGAAGTGTTTCTCAACATCGC 2444
||| ||||| ||||| || || ||||| || |||||||||||||||||| | ||||| ||
Sbjct 126 TGGCATCTCAGACATTCAGCTCGGTCTTGCCACTCTTGAAGAAGTGTTTTTGAACATAGC 185
Query 2445 AAGACAG-GCTGAACTAGAAAGCGCAACAGCTGAAGGAAACATGGTCACTTTGGAGTTAG 2503
|||| | |||||||||||||||||||| | |||||||| |||||||||| | |||||||
Sbjct 186 TAGAC-GTGCTGAACTAGAAAGCGCAACTGTTGAAGGAACCATGGTCACTCTCGAGTTAG 244
Query 2504 CATCAGGCATCTCACTAGAGATACCTGTGGGAGCAAGATTTGTTGGGATCCCTG-ATACA 2562
|||||||||| || | |||||||||||||||||||||||||| || ||||||| | |||
Sbjct 245 AATCAGGCATCGCAGTCGAGATACCTGTGGGAGCAAGATTTGTAGGTATCCCTGGA-ACA 303
Query 2563 GAAAACGCAGAGAATCCAAGTGGAGTAATGGTGGAAGTGTACTGGCAACAAGACGGCTCG 2622
|||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||
Sbjct 304 GAAAACGCAGAGAATCCAAGAGGAATAATGGTGGAAGTGTATTGGCAACAAGACGGGTCA 363
Query 2623 GGGTCGATGTGCATCTCTGGACACTCATCAGAGATGCGGGTACCACAGAATGT-TCCGGT 2681
|| ||||||||||||||||||||||| | ||||||||| ||||| ||||||| || | |
Sbjct 364 GGATCGATGTGCATCTCTGGACACTCGCCGGAGATGCGGATACCAGAGAATGTCTCAG-T 422
Query 2682 GACACGTCCACCATCACCA-AATGCATTAGGACAT 2715
|| | | ||||||| || || | ||||||||||
Sbjct 423 GATATATGAACCATCATCACAA-GTATTAGGACAT 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104138729830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5