BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61760.1
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496342 jgi|Araly1|496342|fgenesh2_kg.8__2158__AT5G61760.1 1749 0.0
> Ahg496342 jgi|Araly1|496342|fgenesh2_kg.8__2158__AT5G61760.1
Length=1162
Score = 1749 bits (947), Expect = 0.0
Identities = 1096/1168 (94%), Gaps = 9/1168 (1%)
Strand=Plus/Plus
Query 24 AACAATTACACTTATTTTGCTATCGTTTGAGCATCTCAAAAATTTCTCCGGGGAGATTTG 83
||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1 AACAAATACACTTCTTTTGCTATCGTTTGAGCA--TC-AAAATTTCTCCGGGGAGATTTG 57
Query 84 TTT-GTATATATACTCTTCCACAAAGAAGATGCTCAAGGTCCCTGAACACCAAGTTGCTG 142
||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 58 TTTGGTATATATACTCTTGCACAAAGAAGATGCTCAAGGTCCCCGAACACCAAGTTGCTG 117
Query 143 GTCACATTGCTAGTGATGGGAAGCTCGGTCCACTCGTAGATGACCAAGGCCGGTTCTTCA 202
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 118 GTCACATTGCTAGTGATGGGAAGCTAGGTCCACTCGTAGATGACCAAGGCCGATTCTTCA 177
Query 203 AGCCACTTCAGGGAGATTCTCGTGGCGAACACGAGGCTAAGTTCTATGAGTCTTTCACAT 262
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 178 AGCCACTTCAGGGAGATTCTCGTGGCCAACATGAGGCTAAGTTCTATGAGTCTTTCACAT 237
Query 263 CGAACATGAAGGTTCCAGATCACATCCATAGATACTTCCCGGTGTATCACGGCACTCAGC 322
|||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 238 CGAACAAGAAGGTTCCAGATCTCATCCGTAGATACTTCCCGGTGTGTCACGGCACTCAGC 297
Query 323 TAGTTGAAGCATCTGATGGATCTGGCAAGCTTCCTCATCTTGTTCTTGATGATGTTGTTT 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TAGTTGAAGCATCTGATGGATCTGGCAAGCTTCCTCATCTTGTTCTTGATGATGTTGTTT 357
Query 383 CAGGGTACGCAAACCCGTCGGTAATGGATGTTAAGATTGGATCTAGGACATGGTACCCGG 442
| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 TTGTGTACTCAAATCCGTCGGTAATGGATGTTAAGATTGGATCTAGGACATGGTACCTGG 417
Query 443 ATGTATCAGAAGAATACTTCAAGAAATGTATTAAGAAAGATAGACAGACCACCACGGTTT 502
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 ATGTATCCGAAGAATACTTCAAGAAATGTATTAAGAAAGATAGACAGACCACCACGGTGT 477
Query 503 CGTTGGGGTTCAGGGTTTCAGGTTTTAAGATTTTTGATCACCAAGAATCAAGTTTTTGGA 562
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 478 CGTTGGGATTCAGGGTTTCGGGTTTTAAGATTTTTGACCACCAAGAATCAAGTTTCTGGA 537
Query 563 GAGCTGAGAAGAAGCTTGTTCTTGGGTATAATGCAGATGGTGCTAGATTGGCTCTGAGGA 622
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||
Sbjct 538 GAGCTGAGAAGAAGCTTGTTCTTGGGTACAATGCGGATGGCGCTAGATTGGCTCTGCGGA 597
Query 623 AGTTTGTGTCATCGAACTCTCCCGCTGACTCTAACTTGACACCAAACTGTGCTTTTGCAT 682
| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 598 ACTTTGTGTCATCAAACTCGCCCGCTGACTCTAACTTGACTCCAAACTGTGCTTTTGTAT 657
Query 683 CAGAGGTTTATGGCGGTTGTAACGGGATCTTAGCGCAGTTGTTGGAGCTTAAAGATTGGT 742
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGAGGTTTATGGTGGTTCTAATGGGATCTTAGCGCAGTTGTTGGAGCTTAAAGATTGGT 717
Query 743 TCGAAACCCAAACGCTTTACCATTTCAATTCCTGCTCGATTCTGATGATTTACGAGAATG 802
|||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
Sbjct 718 TCGAAAGCCAAACGCTTTACCATTTCAATTCTTGCTCAATTCTGATGATTTTCGAGAACG 777
Query 803 AATCAATCTTGATGCAAGGAGGAGATGATGCACCGGCAC-CACGGGCACAAGTGAAGCTG 861
|||| ||||||||| ||| ||||||||||||||||| | |||| |||||||| ||||||
Sbjct 778 AATCGATCTTGATGAAAGAAGGAGATGATGCACCGG-AGGCACGTGCACAAGTAAAGCTG 836
Query 862 GTGGATTTCGCGCATGTTCTTGATGGAAACGGTGTCATCGACCATAATTTCTTGGGTGGA 921
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 GTGGATTTCGCGCATGTTCTTGACGGAAACGGTGTCATCGACCATAATTTCTTGGGTGGA 896
Query 922 CTCTGCTCTTTCATAAAGTTCATCAAAGATATTCTTCAGAGCGTTGAAAAGCACGATGAA 981
|||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||
Sbjct 897 CTCTGCTCTTTCATAAAGTTCATCAAAGATATCCTTCAGAGCGTAGACAAGCGCGATGAA 956
Query 982 ACCGATACTTCCCTACTTGAGAACGGGCGCTAGAGAAACGTCGTTCTTCCCGGCTCCATT 1041
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 957 ACCGATACTTCCCTACTTGAGAACGGGCACTAGACAAACGTCGTTCTTCCCGGCTCCATT 1016
Query 1042 TCAAATAATCTCCAAGTTTTTCCTTTCTTGGACTAGTTGGGTTTTGGACATGAACGTTTG 1101
||||||||||||||||||||||||| ||||| || |||| |||||||||| ||||||||
Sbjct 1017 TCAAATAATCTCCAAGTTTTTCCTTAGTTGGATTAATTGG-TTTTGGACATAAACGTTTG 1075
Query 1102 TCCCTTTCAATTGTATAATTTCGTTAACTAAACCATTGTACTTTCTCATTAGAG-AAATA 1160
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
Sbjct 1076 TCCCTTTCAATTGTATAATTTCGTTAACCAAACCATTGTACTTTCTCATTAGAGGAAA-A 1134
Query 1161 TATCGAGAGTTTCATGAAAGTAAGCTAA 1188
|||||| ||||||||| || ||||||||
Sbjct 1135 TATCGAAAGTTTCATGGAATTAAGCTAA 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44832550392
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5