BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61820.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496351 jgi|Araly1|496351|fgenesh2_kg.8__2167__AT5G61820.1 2324 0.0
> Ahg496351 jgi|Araly1|496351|fgenesh2_kg.8__2167__AT5G61820.1
Length=1675
Score = 2324 bits (1258), Expect = 0.0
Identities = 1550/1687 (92%), Gaps = 36/1687 (2%)
Strand=Plus/Plus
Query 6 TCATCACAATAGCGGGAAACTCATCCGGCTTCTGGAAATTTCCGTTTATCCGATTCGTTC 65
|||| || |||||||||||||||| |||| |||||||||||||||||||||||||| | |
Sbjct 1 TCATTACGATAGCGGGAAACTCAT-CGGCCTCTGGAAATTTCCGTTTATCCGATTCCTAC 59
Query 66 TCACGAGATGATGGCTCGTTACCACAGGAGATCGATGATCTTGTGCTTAGTTCTGCTCTC 125
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||
Sbjct 60 TCACGAGATGATGGCTCGTTACCTCAGGAGATCGCTGATCTTGTTCTTAGTTCTGGTCTC 119
Query 126 ATTAAGCATATCGCCGAGCCAAGGCTTCCTAGGGACAGAGGA-AAAGATCAAATCCGCTG 184
||||| |||||| || ||||||||||| ||||||||||| || |||||||||||| || |
Sbjct 120 ATTAACCATATCCCCTAGCCAAGGCTTTCTAGGGACAGA-GAGAAAGATCAAATCTGCAG 178
Query 185 TCTTTTACTCACCAAAACTTGTGATGAATCCAGGATCAGTTGCAAATCCTTACTTATTCG 244
|||||| |||||| ||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 179 TCTTTTTCTCACCCAAACTGGTGATGAATCCTGGATCAGTCGCAAATCCTTACTTATTCG 238
Query 245 ACATCGATTTCCCAAGAGGTCATATCGGCCTCAAAGCTTTCGATGCTGAAGTGGTTGACG 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 ACATCGATTTCCCAAGAGGTCACATCGGCCTCAAAGCTTTCGATGCTGAAGTGGTTGACG 298
Query 305 AAGCGGGCAAA-CCCGTTCCTCTACACGAGACCTATCTCCACCATTGGATTGTCGAGCCA 363
| ||||| ||| ||||| ||||||||||| || ||||| |||||||||||| |||| ||
Sbjct 299 ATGCGGG-AAATCCCGTCCCTCTACACGAAACATATCTTCACCATTGGATTATCGAACCT 357
Query 364 TACTATGTACGTAAAGGTTCCAAGCTTCCACAGAGAGAAATGTTCAGGAATCATGGATTT 423
|||||||| ||||||||||| |||||||||||| |||||||||| |||||||| ||||||
Sbjct 358 TACTATGTTCGTAAAGGTTCTAAGCTTCCACAGCGAGAAATGTTTAGGAATCACGGATTT 417
Query 424 TCCAGGGAAGATCCTGAAAGCAATCTTGATTCCAAGTCAGATATTATTCTTGTGAAAAAT 483
|| ||| ||||||||| ||||||||||||||| || || ||||||||||||||||||||
Sbjct 418 TCGAGGCAAGATCCTGGAAGCAATCTTGATTCGAAATCGGATATTATTCTTGTGAAAAAC 477
Query 484 GGAGGGTTGTGCAGGAGTTTAACACTCAGACATTTCTTTGGTTTAGGATCAGAAACCCGC 543
||||| ||||| |||||| || ||| ||||||| |||||||||||||||||||||||||
Sbjct 478 GGAGGCTTGTGTAGGAGTGTAGTACTTAGACATTACTTTGGTTTAGGATCAGAAACCCGC 537
Query 544 GAAACCTCGACGTATGTTCCTGATCCCTACGCTATTGAAATCGGTAATCCTGAGGAAACA 603
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 538 AAAACCTCGACGTATCTTCCTGATCCCTACGCAATTGAAATCGGTAATCCTGAGGAAACA 597
Query 604 CCTGATGGTTATGAATTCAAATGGCTTCTTAACATTCACGCGATAGACACCAGAGGTGTG 663
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 CCTGATGGATATGAATTCAAATGGCTTCTTAACATTCACGCGATAGACACGAGAGGTGTT 657
Query 664 GAAGATAAGAAAGGATGCATAGAATG-TTTGTGTGATCTGTATAATGTTACCATTGATGA 722
|||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||
Sbjct 658 GAAGATAAGAAAGGATGCATAGAATGCCTT-TGTCATCTGTATAATGTAACCATTGATGA 716
Query 723 GTATGGTCGAGCTATAAGGCCTGGATACAAAGGAGGTTTATACTGCTGCTATGATAAGAC 782
||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 717 GTACGGTCGAGCTATAAGACCCGGTTACAAAGGAGGTTTATACTGCTGCTATGATAAGAC 776
Query 783 TCAATGTCGGGTGAAAAGCGGATTTGACAATGGGGAGAAAACAAGAACTCTGTATTTGAA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCAATGTCGGGTGAAAAGCGGATTTGACAATGGGGAGAAAACAAGAACTCTGTATTTGAA 836
Query 843 GTATACCGTGAGATGGGTTGATTGGGACAGCTCGGTTTTGCCCGCTAAGGTTTATATTTT 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTATACCGTGAGATGGGTTGATTGGGACAGCTCGGTTTTGCCCGCTAAGGTTTATATTTT 896
Query 903 CGATGTTACAGATTCTTGGGAAAGATCAAAAGGA------GA---TAGCCAAGAACATAT 953
||||||||| |||||||||||||||||| | ||| || |||||||||||||||
Sbjct 897 CGATGTTACGGATTCTTGGGAAAGATCAGAGGGATCAATAGAAAATAGCCAAGAACATAT 956
Query 954 TTGCCATGTGGAATACGAGGTGAAACCGTGCAAAACCAATGGCGATGGATGCGTTGACGT 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 957 TTGCCATGTGGAATACGAGGTGAAACCGTGCAAAACCAATGGCGATGGATGCATTGATGT 1016
Query 1014 TAAGAAAAAGAGCTTAGTGATGCCATTTGATGGGTATATTGTCTACGGGGTAGCTCACCA 1073
|| ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1017 TAGGAAAAAGAGCTTAATGATGCCATTTAATGGGTATATTGTCTACGGCGTAGCTCACCA 1076
Query 1074 GCACGCTGGTGGTATCGGTGGTGCTCTATACCGAGAGAACGGTGAAGGGATATGCGCTTC 1133
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1077 GCACGCGGGTGGTATCGGTGGTGCTCTATACCGAGAGAACGGTGAAGGAATATGCACTTC 1136
Query 1134 AATGCCGAAGTATGGCAATGGAGATGAACCTGGAAACGAAGCTGGTTACATTGTTGGAAT 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GATGCCGAAGTATGGCAATGGAGATGAACCTGGAAACGAAGCTGGTTACATTGTTGGAAT 1196
Query 1194 GTCGTCTTGTTATCCAGCTGATCCAGTGAAAGTGAGCTATGGAGAGACATTGA-CTTTGG 1252
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1197 GTCGTCTTGTTATCCTGCTGATCCAGTGAAAGTGAGCTATGGAGAGACATTGAACTT-GG 1255
Query 1253 AATCTAATTACAGTAATGCCGTTGGTCATACCGGAGTTATGGGACTCTTTTACATCCTCG 1312
| | |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1256 AGTTTAATTACAGTAATGACGTTGGTCATACGGGAGTTATGGGACTCTTTTACATCCTCG 1315
Query 1313 TTGCTCAGCAGCTGCCGGAACCAGATAGCTCCTTGCCTAATAAACAACATTTTGAGGCAC 1372
|||||||||||||||| |||||||| | |||||||||||| | | |||||||||||
Sbjct 1316 TTGCTCAGCAGCTGCCTGAACCAGAGAACTCCTTGCCTAA-A--CT---TTTTGAGGCAC 1369
Query 1373 CTGCGAGAAGCTTGAGCTTTTTAGCCATTTTTGCAGTGACGGTAGTTGTGGCTGTTGTGG 1432
|||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||
Sbjct 1370 CTGCGAGAAGCTTGAGCTTTTTAGCCATTTTTGCAGTGACAGTGGTGGTGGCGGTTGTGG 1429
Query 1433 TTTTAATAGCCGCCGTGATATACCGGAGACAGAAACGGGAAGATGGTTACCAATCACTTA 1492
|| |||| |||| ||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 1430 TTCTAATTGCCGTCGTGATACACCGGAGGCAGAACCGGGAAGATGGTTACCAATCACTTA 1489
Query 1493 GTACTTAAAAAA-GAGCAAAAACCATGTCGACTCTATATATGTCTTCAAAGTGAATTCTG 1551
|||||||||||| |||||||| ||||||||||| ||||||| ||| ||||||||||| ||
Sbjct 1490 GTACTTAAAAAAAGAGCAAAA-CCATGTCGACTATATATATTTCTCCAAAGTGAATTTTG 1548
Query 1552 TTTGT---ATACATAGAATAAAAGATTATTTTGTTGTCATCTTCCTCTGATGTGATATCT 1608
||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 1549 TTTGTTGTATACATAGAATAAATGATTATTTTGCTGTCATCTTCCTCTGATGTGATATTT 1608
Query 1609 CTGTAAT---A-GT--T-ACGTGTAAGAAGAACTTTTCTTTCTCAAATACATCACATTCA 1661
||||||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 CTGTAATGTTACGTACTTACGTGTAAGAAGAACTTTTCTTTCTCAAATACATCACATTCA 1668
Query 1662 CACAATA 1668
|| ||||
Sbjct 1669 CAGAATA 1675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5