BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61840.1 Length=1672 Score E Sequences producing significant alignments: (Bits) Value Ahg496352 jgi|Araly1|496352|fgenesh2_kg.8__2168__AT5G61840.1 2296 0.0 > Ahg496352 jgi|Araly1|496352|fgenesh2_kg.8__2168__AT5G61840.1 Length=1497 Score = 2296 bits (1243), Expect = 0.0 Identities = 1438/1526 (94%), Gaps = 38/1526 (2%) Strand=Plus/Plus Query 130 ACTACTTCTTCTGACATTTCAGCTGTTCTAGTTGATCTTTATATACTTTATATGATCT-G 188 ||| ||||||| ||| || ||||||||||||||||||||||||||| ||||||||||| | Sbjct 1 ACTTCTTCTTCCGACGTTCCAGCTGTTCTAGTTGATCTTTATATAC-TTATATGATCTGG 59 Query 189 GGATTTTGAAGAGTTTTTAGGGAGGAACCAAAATTTCTGAGAGAGAAAAATGAAGTTATC 248 |||||||||||| ||||||||||| | || ||||||||||||||||| Sbjct 60 GGATTTTGAAGA--TTTTAGGGAGG-------------G-GA-AGAAAAATGAAGTTATC 102 Query 249 GAGCTGCGTTTTGATCTTCCTTCTATGTAA---CACATT-CTC-C-TCGATTTCTGCTTT 302 |||||| ||||||||||||||||| ||||| ||| || ||| | ||||||||||||| Sbjct 103 GAGCTGGGTTTTGATCTTCCTTCTTTGTAACCTCACCTTCCTCTCGACGATTTCTGCTTT 162 Query 303 CCGTCTGAGTCGGAGTCAACCAACTGAGCGAATTTCAGGTAGTGCTGGTGATGTGTTGGA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 CCGTCTGAGTCGGAGTCAACCAACTGAGCGAATTTCAGGTAGTGCTGGTGATGTGTTGGA 222 Query 363 AGATGATCCCGTGGGAAGACTGAAAGTCTTTGTTTATGAGCTTCCAAGTAAATACAACAA 422 ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 GGATAATCCTGTGGGAAGACTGAAAGTCTTTGTTTATGAGCTTCCAAGTAAATACAACAA 282 Query 423 GAAGATACTTCAGAAGGATCCGAGATGTCTAAACCACATGTTTGCTGCTGAGATATATAT 482 |||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| Sbjct 283 GAAGATACTTCACAAGGACCCGAGGTGTCTAAACCATATGTTTGCTGCTGAGATATATAT 342 Query 483 GCAACGGTTTCTTTTATCTAGCCCAGTTCGAACACTTAATCCCGAGGAAGCTGATTGGTT 542 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 343 GCAACGGTTTCTTTTATCCAGCCCAGTTCGAACACTTAATCCCGAGGAAGCTGATTGGTT 402 Query 543 CTACGTACCTGTGTACACCACTTGTGATCTCACGCCTAATGGGCTTCCTCTTCCTTTTAA 602 ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 TTACGTCCCTGTGTATACCACTTGTGATCTCACGCCTAATGGGCTTCCTCTTCCTTTTAA 462 Query 603 ATCTCCACGAATGATGAGAAGTGCCATTCAGCTTATTGCTTCCAATTGGCCATACTGGAA 662 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 463 ATCTCCACGGATGATGAGAAGTGCCATTCAGCTTATTGCTTCCAACTGGCCATACTGGAA 522 Query 663 TCGCACAGAAGGAGCAGACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCA 722 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 523 TCGCACAGAAGGAGCAGACCACTTCTTTGTCGTGCCTCATGACTTTGGAGCCTGTTTCCA 582 Query 723 TTATCAAGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACACT 782 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 583 TTATCAAGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGGGCTACACT 642 Query 783 GGTGCAGACATTTGGACAAAGGAATCATGTTTGCTTGAAAGAAGGTTCAATCACTGTTCC 842 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 643 GGTGCAGACATTTGGACAAAGGAATCATGTTTGCTTGAAGGAGGGTTCAATCACTGTTCC 702 Query 843 TCCATATGCTCCACCACAGAAGATGCAGTCACACTTAATTCCCGAAAAAACTCCTCGATC 902 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 703 TCCATATGCTCCACCACAGAAGATGCAGTCACACTTAATTCCTGAGAAAACTCCTCGATC 762 Query 903 CATCTTCGTTTATTTCAGAGGATTGTTTTATGATGTGGGAAATGACCCTGAGGGTGGTTA 962 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 763 CATCTTCGTTTATTTCAGAGGATTGTTTTATGATGTGGGAAATGACCCTGAGGGTGGCTA 822 Query 963 TTATGCGAGGGGTGCAAGAGCAGCTGTATGGGAAAACTTCAAAGACAATCCGCTGTTTGA 1022 |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 823 TTATGCAAGGGGTGCACGAGCAGCTGTATGGGAAAACTTCAAAGACAATCCGCTGTTCGA 882 Query 1023 CATCTCAACAGAGCACCCAACAACATATTATGAGGACATGCAGAGAGCAATCTTCTGCCT 1082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 883 CATCTCAACAGAGCACCCAACAACATATTATGAGGACATGCAGAGAGCAATCTTCTGCTT 942 Query 1083 ATGCCCACTTGGATGGGCCCCATGGAGTCCAAGACTGGTGGAAGCAGTGATATTCGGTTG 1142 |||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| Sbjct 943 ATGCCCACTTGGATGGGCACCATGGAGTCCAAGACTGGTGGAAGCTGTGATCTTTGGTTG 1002 Query 1143 CATCCCTGTGATCATAGCAGACGACATCGTGTTACCTTTTGCAGATGCAATCCCTTGGGA 1202 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1003 CATCCCTGTGATCATAGCAGATGACATCGTGTTACCTTTTGCAGATGCGATCCCTTGGGA 1062 Query 1203 AGATATTGGTGTGTTTGTGGATGAGAAAGATGTCCCTTACCTGGACACAATACTCACATC 1262 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1063 AGATATTGGTGTGTTTGTGGATGAGAAAGATGTTCCTTACCTGGACACAATACTCACATC 1122 Query 1263 GATCCCACCAGAGGTTATACTGAGAAAACAGAGGTTGTTGGCAAACCCGTCGATGAAACA 1322 |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1123 GATCCCTCCAGAAGTTATACTGAGAAAACAGAGGTTGTTGGCAAATCCGTCGATGAAACA 1182 Query 1323 AGCCATGCTGTTCCCGCAACCGGCTCAACCAGGGGATGCGTTTCATCAAGTATTGAATGG 1382 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1183 AGCCATGCTGTTTCCGCAACCGGCTCAACCAGGGGATGCGTTTCATCAAGTGTTGAATGG 1242 Query 1383 GTTGGCTCGTAAGCTGCCTCATGAGAGGAGTGTGTATCTGAGACCAGGTGAGAAGCTGTT 1442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1243 GTTGGCTCGTAAGCTGCCTCATGAGAGGAGTGTGTATCTGAGACCAGGTGAGAAGCTGTT 1302 Query 1443 GAACTGGACGGCAGGACCGGTCGCTGATCTGAAACCTTGGTAAGGACCAGTGTTGGAATT 1502 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1303 GAACTGGACGGCAGGACCGGTGGCTGATCTGAAACCTTGGTAAGGACCAGTGTTGGAATT 1362 Query 1503 TGATTGAATGAGC-TATTGTTTGGTTGGTTTCTGTCTTCTCGTGTCTGTATTTTGTAGAA 1561 |||||||| || | ||||| | |||||| |||| | ||||||||||||||||||| Sbjct 1363 TGATTGAAGGATCCTATTG---G-TTGGTT-CTGT-T----GTGTCTGTATTTTGTAGAA 1412 Query 1562 TCATAACttttttttGCTATGTAGAAGGGAAAAAGCTTTG-TCATTGTAATGTAACTAGA 1620 ||||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||| Sbjct 1413 TCATAACCTTTTTTTGCTATGTAGAAGGGAAAAAGCTT-GATCATTGTAATGAAACTAGA 1471 Query 1621 ATCCTTTTGACATCTCACGAGAAAGA 1646 |||||||||||||||||||||| ||| Sbjct 1472 ATCCTTTTGACATCTCACGAGAGAGA 1497 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62696543270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5