BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61910.1
Length=2765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496360 jgi|Araly1|496360|fgenesh2_kg.8__2176__AT5G61910.2 3415 0.0
> Ahg496360 jgi|Araly1|496360|fgenesh2_kg.8__2176__AT5G61910.2
Length=2571
Score = 3415 bits (1849), Expect = 0.0
Identities = 2357/2592 (91%), Gaps = 75/2592 (3%)
Strand=Plus/Plus
Query 189 CTAGGGTTTCAATATCCGATAAAAGCGATGGAGACGGAGATGGATTTCTCAGATGGTGAA 248
|||||||||||| ||||| | || |||||||||| |||||||| ||||| |||||||||
Sbjct 1 CTAGGGTTTCAAAATCCGGT--AA-CGATGGAGACAGAGATGGAGTTCTCTGATGGTGAA 57
Query 249 CAAACTAATGGTAATTCACATGTTACTGCCTCCCAATACTTTGCTCCTCCGGGTTATAAT 308
|||||||||| |||| |||||||||| |||||||||||||||||| |||||| |||||||
Sbjct 58 CAAACTAATGCTAATGCACATGTTACCGCCTCCCAATACTTTGCTTCTCCGGTTTATAAT 117
Query 309 AGAAGTCTTGTGGCTGCTTATGGGAATGGAAACACAACCATTGGATTAGAAAAAGGAATA 368
||||||||||||||||| | | |||||||| | || |||||||||||||||| |||
Sbjct 118 AGAAGTCTTGTGGCTGC-T-T----ATGGAAACTCCGCCGTTGGATTAGAAAAAGGGATA 171
Query 369 GAAAGGAGACTA-GATCATCATGAGCAA-CTACCTGGTTATATCTTTATGTGTAATGGGA 426
|||| || || | |||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 172 GAAACGATAC-AGGATCATCAGGAG-AACCTACCTGGTTATATCTTTATGTGTAATGGGA 229
Query 427 GAACGAAAACCGATTGCTACCGTTACCGTGTTTTCGGGATTCCAAGAGGAGGAAAAGACG 486
|||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 230 GAACCAAAACCGATTGCTACCGCTACCGCGTTTTCGGGATTCCAAGAGGAAGAAAAGACG 289
Query 487 TTGTTGAGAGTATAAAGCCAGGCATGAAGCTTTTCCTCTATGACTTTGAGAAGAGACTTC 546
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TTGTTGAGAGTATAAAACCAGGCATGAAGCTTTTCCTCTATGACTTTGAGAAGAGACTTC 349
Query 547 TTTATGGTGTGTATGAAGCTACTGTTGGTGGCAGGTTGGATATAGAACCTGAAGCTTTTG 606
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TTTATGGTGTCTATGAAGCTACTGTTGGTGGCAGGTTGGATATAGAACCTGAAGCTTTTG 409
Query 607 A-AGGGAAATATCCAGCTCAAGTTGGATTTAGAATTGTCATGAACTGT-TTACCCTTGAC 664
| | ||||||||||||||| ||||||||||||||||||||||||||| || |||||| |
Sbjct 410 ATA-AGAAATATCCAGCTCAGGTTGGATTTAGAATTGTCATGAACTGTCTT-CCCTTGCC 467
Query 665 AGAAAACACTTTCAAGTCTGCTATCTATGAAAATTACAAAGGTTCCAAATTTAAGCAAGA 724
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AGAAAACACTTTTAAGTCTGCTATCTATGAAAATTACAAAGGTTCCAAATTTAAGCAAGA 527
Query 725 ACTTTCTCCTCACCAAGTTATGTCTCTGTTATCATTGTTTCGTTCATTTACGTCTCCAGA 784
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 528 ACTTTCTCCTCACCAAGTTATGTCTCTGTTATCATTGTTTCGTCCATTTACTTCTCCAGA 587
Query 785 ACTCGATTTGTTGCCTCATAGGTTGGCTTCCAGAGCTTCAGCACCTAGGACTCTATCGTT 844
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 588 ACTCGATTTGTTGCCTAATAGGTTGGCTTACAGAGCTTCAGCACCTAGGACTCTATCTTT 647
Query 845 TGAGGAAAGGTTCATAGCGGCTACACATCTTAGAAATGCTTCATCGGTTTTAGATCCTCT 904
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 648 TGAGGAAAGGTTCATAGCGGCTACACAAGTTAGAAATGCTTCATCGGTTTTAGATCCTCT 707
Query 905 GTCTGCTCGTCATGTAGAACCACGACTTGGCTCTGTTATGGCCCATCAGCCTGTTCCCCG 964
|||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 708 GTCTGCTCGTCATGCAGAACCACGACTTGGCTCTCTTATGGCCCATCAGTCTGTTCCCCG 767
Query 965 CACATCTCTGCTTCAACATAGTTACTTTAGACAAGACGACTACACGACCCCACCTAGAGA 1024
||||||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 768 CACATCTCTACTCCAACATAGTTACTCTAGACAAGACGACTACACAACCCCACCTAGAGA 827
Query 1025 AAGTCTGTCAAATTTGAATCAGCCTTATTATCCTACAGAAGCTCGGCAACTACGGTTGCT 1084
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 828 AAGTCTGTCAAATTTGAATCAGCCTTATTATCCTACAGAAGCTCGGCAGCAACGGTTGCT 887
Query 1085 CGGAGACCCTTCTCGCTCAGATTCTCCTCGGTCCGAACCTCCGCGGTCATCTATTCAGGA 1144
||||||||| ||||| |||||| |||||||||| ||||||| |||||||||||| |||||
Sbjct 888 CGGAGACCCGTCTCGGTCAGATCCTCCTCGGTCAGAACCTCTGCGGTCATCTATACAGGA 947
Query 1145 TCCTCAACTCAAATACCTCACCATTTTATCTAATATTCGGAGATATGGATCTGCATCAGA 1204
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 948 CCCTCAACTCAAATACCTAACCATTTTATCTAATATTCGGAGATATGGATCTGCCTCAGA 1007
Query 1205 TCGCTTGGCCTCAGAAAATGAATATCATCCGGCAACACCATCAGAGAAGGACCAGTTTGC 1264
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1008 TCGCTTGGCCTCAGAAAATGAATATTATCCGACAACACCATCAGAGAAGGACCAGTTTGC 1067
Query 1265 TGT-ACCTTATTCTGATAATAAAAATTACCCTTCGACTTTATCTGGGAGTGAGCATCCTT 1323
| | ||||||||| ||||||||| ||||||| ||||| ||||||| || |||||||||||
Sbjct 1068 T-TCACCTTATTCCGATAATAAATATTACCCCTCGACATTATCTGCGAATGAGCATCCTT 1126
Query 1324 CTGCTTCTGCAGCTAATGGGAGTGTGTATAGAAGTGAGTTCTATAATTCAGCATCACAAA 1383
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1127 CTGCTTCTGCAGCTAATGGGAGTGTGTATAGAAGTGAGTTCTATACTTCAGCATCACAAA 1186
Query 1384 AGGAAGGGGAAGCTAGTCAGCAGCATGAGATCCCTGCTGGGACTTACCATCACCCAGAAG 1443
| ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 1187 AAGAAGGGGAAGCTAGTCAGCAGCATGAGATCCCTTCTGGGACTTACAATCATCCAGAAG 1246
Query 1444 CATCAACAGTTTCCAATACTACAAAGTCCATGCAACCAGATATGCAGGCAGTTAGTGTTG 1503
|||| |||||||| ||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 1247 CATCTACAGTTTCAAATACTACAGTGTCCATCCAACCAGATATACAGGCAGTTAGTGTTG 1306
Query 1504 CTCAATCTCATACCGAGACAGCTGGCTATCCTACACCGGCACATGGTGAAGCTTCACAAC 1563
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1307 CTCAATCTCATACCGAGACAGCTGGCTATCCTACACCGGTACATGGTGAAGCTTCACAAC 1366
Query 1564 CACCTGCTGGAGCAATTGGTTACACACACCAACCTCAAAGTGTAGCGGGTAATTATAGCA 1623
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1367 CACCTGCTGTAGCAATTGGTTACACACACCAACCTCAAACTGTAGCGGGTAATTATAGCA 1426
Query 1624 CGCATTCACAGCCTGGGAATGTGGAAGAAAGTACACAATCATATGCTGGAACAGATAGTT 1683
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1427 CGAATTCACAGCCTGGGAATGTGGAAGAAAGTACACTATCATATGCTGGAACAGATAGTT 1486
Query 1684 ACTCACAACAGCAATATTATGCAGCTATGGGGCCTACTACTCAACTCCATGCTGGT---- 1739
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1487 ACTCACAACAGCAATATTATGCAGCTATGGGGCATACTACTCAACTCTATGCTGGTGGAA 1546
Query 1740 --GGATATATTCAAAAACCTCATGAAATTGGGTACTCTCAGCAACCTCATGATGCGGCAA 1797
||||||||||||||||| ||||||||||||||| |||||||||| |||| ||| ||||
Sbjct 1547 CCGGATATATTCAAAAACCCCATGAAATTGGGTACGCTCAGCAACCCCATGCTGCAGCAA 1606
Query 1798 CCGGGTACTCTCAGCAACCTCATGATGCAGCAACCGGGTACTCTCA-GCAACCTCATGAT 1856
|||||||||||||||||||||||| |||||||||||||||||| || | | ||| ||| |
Sbjct 1607 CCGGGTACTCTCAGCAACCTCATGCTGCAGCAACCGGGTACTCCCAGGTACCCT-ATGCT 1665
Query 1857 GCAGCAACCGGGTACTCTCA-GCAACCTCATGCCGCATCAACCGGGTACTCTCAGCAAAC 1915
||||||||||||||||| || | | ||| ||| ||| ||||||||||||| |||||| |
Sbjct 1666 GCAGCAACCGGGTACTCCCAGGTACCCT-ATGATGCAGCAACCGGGTACTCCCAGCAACC 1724
Query 1916 CTATGCTGCAGCAACCGGGTACACTCAGCAACCCCATGCGGCGGCAGCCGGGTACACTCA 1975
|||||||||||||||||||||| ||||||||||| |||| || ||| |||||||| ||||
Sbjct 1725 CTATGCTGCAGCAACCGGGTACTCTCAGCAACCCTATGCTGCAGCAACCGGGTACTCTCA 1784
Query 1976 GCAACCCCATGCGGCGGCAACCGGGTATTCTCAGCAACCCCATGCTGCAGCTACCGCGCA 2035
|||||||||||| || || ||||||||||||||||||||||| ||||||| || |||||
Sbjct 1785 GCAACCCCATGCTGCCACAGCCGGGTATTCTCAGCAACCCCATTCTGCAGCGACTGCGCA 1844
Query 2036 CGCTCAGCAACCCTATGCTGCAGCGACCGCGCACGCTCAGCAACTCCATGCTGTAGCTAC 2095
||||||||||||| ||||||||||||| |||||||||||||||| |||||||| ||| ||
Sbjct 1845 CGCTCAGCAACCCCATGCTGCAGCGACTGCGCACGCTCAGCAACCCCATGCTGCAGCGAC 1904
Query 2096 TGGGTATGCTCTGCAA-CTCCATGCTGCAGCTACCGGGTACGCTCAGCAACCCCATGCTG 2154
| | | |||| |||| || ||| ||||||| |||| | ||||| | | | |
Sbjct 1905 CGCGCACGCTCAGCAACCT-CATTCTGCAGCGACCGCGCACGCT---C-A----A---T- 1951
Query 2155 CCGCAACTGGGTATGCTTTGCAACCACATGCTCAAGCTGTTGAATACACAATGCAACCAC 2214
| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 ACACAAC-----A-------CAACCACATGCTCAAGCTGTTGAATACACAATGCAACCAC 1999
Query 2215 ATGCTCAAGCTGTTGGCTACATGCCGCAATACCATGCTCACGCTGTTGTATACAGTCAAC 2274
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 2000 ATGCTCAAGCTGTTGGTTACATGCCGCAATACCATGCTCAAACTGGCGTATACAGTCAAC 2059
Query 2275 AAGGTGTGACGCAAGGTTCTGTACCAAGGGCTCCTGGGACAACTGATTGTAATGCTGCAA 2334
||||||| |||||||||||||||||| |||||||||||||| ||||||| ||||||||||
Sbjct 2060 AAGGTGTAACGCAAGGTTCTGTACCAGGGGCTCCTGGGACAGCTGATTGGAATGCTGCAA 2119
Query 2335 ACCAGGCATATTCTGCAACAGGAGATTGGAATGCAGTGCATCAGTCTTATTACCCTCAGA 2394
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct 2120 ACCAGGCATATTCTGCAACAGGAGATTGGAATGCGGTGAATCAGTCTTATTACCCTCACA 2179
Query 2395 CAGCAGATGCAACCACAACGTATTATCAAACATCTTAAAACGTTAAAGCAAAGTGTTGCT 2454
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 2180 CAGCAGATGCAACCACAACCTATTATCAAACATCTTAAAACGTGAAAGCAAAGTGTTACT 2239
Query 2455 ACTCTGG--ATCTGAGAAACTTGTGCGTGATGGGTGCGGAAGCATGGACTCGAACTGGTG 2512
| ||||| ||||||| |||||||| ||| |||| | |||||||||||| ||||| ||
Sbjct 2240 AATCTGGTGATCTGAGCAACTTGTGTGTGGTGGG-GAA-AAGCATGGACTCAAACTGATG 2297
Query 2513 CACTCAGTGGAAAAGAAGGTCAAGGACATAAAA-CTAGAGTCTCCAGCTCCGTTTACTGT 2571
| |||| |||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2298 CGCTCACTGGACAATAAGGTCAAGGACATAAAAGCTAGAGTCTCCAGCTCCGTTTACTGT 2357
Query 2572 AAGTTTAAAAGTTCTATGTTACGGTTTGATCATATTCATTTCTGAGCTGCGCATGAGGAA 2631
|||||||||||||||| |||| ||||||||||||||||| ||| | | | |
Sbjct 2358 AAGTTTAAAAGTTCTACGTTATGGTTTGATCATATTCAT----GAG--G---A--A--A- 2403
Query 2632 ATTCCTCAAACCATCAAAACTTCTTTAAGTCCCGTTTCAGGAGTGCAATCTGAAATGCAA 2691
||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct 2404 -TTCCTCAAAACATCAAAATTTCTCTAAGTCCCGCTTCAGGAGTGCAATCTGAAATGCAA 2462
Query 2692 TTCTGATTGGGATTTAAAGTTAATAAAACATATTATAACTCTGTTATCATTACTTATGCT 2751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2463 TTCTGATTGGGATTTAAAGTTAATAAAACATATTATAACTCTGTTATCATTACTTATCCT 2522
Query 2752 AAAACATTTCTT 2763
||||||||||||
Sbjct 2523 AAAACATTTCTT 2534
Score = 375 bits (203), Expect = 7e-103
Identities = 289/330 (88%), Gaps = 8/330 (2%)
Strand=Plus/Plus
Query 1767 GGGTACTCTCAGCAACCTCATGATGCGGCAACCGGGTACTCTCA-GCAACCTCATGATGC 1825
|||||||||||||||||||||| ||| |||||||||||||| || | | ||| ||| |||
Sbjct 1609 GGGTACTCTCAGCAACCTCATGCTGCAGCAACCGGGTACTCCCAGGTACCCT-ATGCTGC 1667
Query 1826 AGCAACCGGGTACTCTCA-GCAACCTCATGATGCAGCAACCGGGTACTCTCAGCAA-CCT 1883
||||||||||||||| || | | ||| |||||||||||||||||||||| |||||| |||
Sbjct 1668 AGCAACCGGGTACTCCCAGGTACCCT-ATGATGCAGCAACCGGGTACTCCCAGCAACCCT 1726
Query 1884 CATGCCGCATCAACCGGGTACTCTCAGCAAACCTATGCTGCAGCAACCGGGTACACTCAG 1943
|||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1727 -ATGCTGCAGCAACCGGGTACTCTCAGCAACCCTATGCTGCAGCAACCGGGTACTCTCAG 1785
Query 1944 CAACCCCATGCGGCGGCAGCCGGGTACACTCAGCAACCCCATGCGGCGGCAACCGGGTAT 2003
||||||||||| || |||||||||| |||||||||||||| | || || || | | |
Sbjct 1786 CAACCCCATGCTGCCACAGCCGGGTATTCTCAGCAACCCCATTCTGCAGCGACTGCGCAC 1845
Query 2004 TCTCAGCAACCCCATGCTGCAGCTACCGCGCACGCTCAGCAACCCTATGCTGCAGCGACC 2063
|||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 1846 GCTCAGCAACCCCATGCTGCAGCGACTGCGCACGCTCAGCAACCCCATGCTGCAGCGACC 1905
Query 2064 GCGCACGCTCAGCAAC-TCCATGCTGTAGC 2092
|||||||||||||||| || || ||| |||
Sbjct 1906 GCGCACGCTCAGCAACCTC-ATTCTGCAGC 1934
Score = 331 bits (179), Expect = 1e-89
Identities = 357/442 (81%), Gaps = 15/442 (3%)
Strand=Plus/Plus
Query 1833 GGGTACTCTCAGCAACCTCATGATGCAGCAACCGGGTACTCTCAGCAACCTCATGCCGCA 1892
|||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1576 GGGTACGCTCAGCAACCCCATGCTGCAGCAACCGGGTACTCTCAGCAACCTCATGCTGCA 1635
Query 1893 TCAACCGGGTACTCTCAGCAAACCTATGCTGCAGCAACCGGGTACACTCAGCAACCCCAT 1952
||||||||||||| ||| | ||||||||||||||||||||||| | ||| |||| ||
Sbjct 1636 GCAACCGGGTACTCCCAGGTACCCTATGCTGCAGCAACCGGGTACTCCCAGGTACCCTAT 1695
Query 1953 GCGGCGGCAGCCGGGTACACTCAGCAACCCCATGCGGCGGCAACCGGGTATTCTCAGCAA 2012
| || ||| |||||||| | ||||||||| |||| || ||||||||||| |||||||||
Sbjct 1696 GATGCAGCAACCGGGTACTCCCAGCAACCCTATGCTGCAGCAACCGGGTACTCTCAGCAA 1755
Query 2013 CCCCATGCTGCAGCTACCGCGCACGCTCAGCAACCCTATGCTGC-AGC-GACCGCGCACG 2070
||| |||||||||| |||| | || ||||||||||| ||||||| | | | ||| | |
Sbjct 1756 CCCTATGCTGCAGCAACCGGGTACTCTCAGCAACCCCATGCTGCCA-CAG-CCGGGTATT 1813
Query 2071 CTCAGCAACTCCATGCTGTAGCTACTGGGTATGCTCTGCAACTCCATGCTGCAGCTACCG 2130
||||||||| |||| ||| ||| |||| | | |||| ||||| |||||||||||| || |
Sbjct 1814 CTCAGCAACCCCATTCTGCAGCGACTGCGCACGCTCAGCAACCCCATGCTGCAGCGACTG 1873
Query 2131 GGTACGCTCAGCAACCCCATGCTGCCGCAACTGGGTATGCTTTGCAACCACATGCT-CA- 2188
| |||||||||||||||||||||| || || | | | ||| |||||| ||| || ||
Sbjct 1874 CGCACGCTCAGCAACCCCATGCTGCAGCGACCGCGCACGCTCAGCAACCTCATTCTGCAG 1933
Query 2189 --A--GCT---GTTGAATACACAATGCAACCACATGCTCAAGCTGTTGGCTACATGCCGC 2241
| || | | ||||||||| |||||||||||||||||||||| |||| ||
Sbjct 1934 CGACCGCGCACGCTCAATACACAACACAACCACATGCTCAAGCTGTTGAATACACAATGC 1993
Query 2242 AAT-ACCATGCTCACGCTGTTG 2262
|| || ||||||| |||||||
Sbjct 1994 AACCAC-ATGCTCAAGCTGTTG 2014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104329181055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5