BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61960.1
Length=3886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950958 jgi|Araly1|950958|scaffold_802845.1 4348 0.0
Ahg892659 jgi|Araly1|892659|Al_scaffold_0006_655 2030 0.0
> Ahg950958 jgi|Araly1|950958|scaffold_802845.1
Length=2752
Score = 4348 bits (2354), Expect = 0.0
Identities = 2615/2738 (96%), Gaps = 30/2738 (1%)
Strand=Plus/Plus
Query 658 GATGCCGTCTGATATAATGGAACAGAGAGGTGTTTCAACACCTTCCCACTTTCATGAAGA 717
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 20 GATGCCGTCTGATATTATGGAACAGAGAGGTGTTTCAACACCTTCCCACTTTCATGATGA 79
Query 718 TATTCATATTACTTCAGAGAGGCAATTTGGGTTTATGAAAACAGACATGATGCCTGAAAA 777
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 80 TATTCATATTACTTCAGAGAGGCAATTTGGGTTTATGAAAACAGACCTGATGCCTGAAAA 139
Query 778 CCAAGGTGGTCGTGATAGACTTTCAAGTATGCCAAAGAGTTCCTGGACATCTGAAAGTTA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CCAAGGTGGTCGTGATAGACTTTCAAGTATGCCAAAGAGTTCCTGGACATCTGAAAGTTA 199
Query 838 CCAGCTGAAGCCACAATCTAGTTTTTCTGGGTCGCACCCCTCTGGTAGCCCTAACGCAAG 897
||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||
Sbjct 200 CCAGCTGAAGCCACAATCTAGTTTTTCTGGGTCACACTCCTCTGTTAGCCCTAACTCAAG 259
Query 898 AAACACTACAAATGGTAGTCAGTGGGAAAGCAGTTTATTTTCCAGCTCAATGTCTGATTT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 AAACACTACAAATGGTAGTCAGTGGGAAAGCAGTTTATTTTCCAGCTCAATGTCTGATTT 319
Query 958 ATTTAGTAGAAAGCTGCGGCTACAGGGAAGTGATATGCTATCCACTATGTCTGCAAACAC 1017
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 320 GTTTAGTAGAAAACTGCGGCTACAAGGAAGTGATATGCTATCCACTATGTCTGCAAACAC 379
Query 1018 AGTTGTTACCCACCGTGAAGAAGAACCGTCTGAATCTTTGGAAGAGATTGAGGCACAAAC 1077
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 380 AGTTGTTACCCACCGTGAAGAAGAACCGTCTGAATCTTTAGAAGAGATTGAGGCACAAAC 439
Query 1078 TATTGGAAATCTTCTCCCAGATGAAGATGATCTTTTTGCAGAAGTGACAGGTGAGGTTGG 1137
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 440 TATTGGAAATCTTCTCCCAGATGAAGATGATCTTTTTGCGGAAGTGACAGGTGAGGTTGG 499
Query 1138 GCGTAAATCTCGTGCTAATACAGGAGATGAGTTGGATGAGTTTGACCTCTTCAGCAGTGT 1197
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 500 GCGTAAATCTCGTGCTAATACTGGAGATGATTTGGATGAGTTTGACCTCTTCAGCAGTGT 559
Query 1198 TGGTGGCATGGAACTAGATGGAGATATTTTTTCTTCTGTGAGTCATAGAAATGGTGAGAG 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 560 TGGTGGCATGGAACTAGATGGAGATGTTTTTTCTTCTGTGAGTCATAGAAATGGTGAGAG 619
Query 1258 AGGTGGCAATAATTCTGTTGGCGAGCTTAACCGTGGGGAAATTCCATCCAGAACACTTTT 1317
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 620 AGGTGGCAATAATTCTGTTGGCGAACTTCATCGTGGGGAAATTCCATCCAGAACACTTTT 679
Query 1318 GGTCGGAAATATCAGTAGCAATGTTGAAGACTATGAGCTGAAGGTCCTTTTTGAGCAATT 1377
|||||||||||||||||||||| | |||||||||||| ||| ||| |||||||||||||
Sbjct 680 GGTCGGAAATATCAGTAGCAATATCGAAGACTATGAGTTGAGGGTTATTTTTGAGCAATT 739
Query 1378 TGGAGACATCCAGGCTCTTCATACAGCTTGCAAAAATCGTGGCTTTATCATGGTATCGTA 1437
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TGGAGAAATCCAGGCTCTTCATACAGCTTGCAAAAATCGTGGCTTTATCATGGTATCGTA 799
Query 1438 CTGTGATATAAGGGCTGCTCAGAATGCGGCGAGAGCACTCCAGAATAAGCTGTTAAGAGG 1497
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CTATGATATAAGGGCTGCTCAGAATGCGGCGAGAGCACTCCAGAATAAGCTGTTAAGAGG 859
Query 1498 AACAAAACTTGACATTCGTTATTCTATCTCTAAGGAAAATCCTTCACAAAAAGATACAAG 1557
|||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
Sbjct 860 AACAAAACTTGACATTCGTTATTCTATCTCTAAGGAAAATCCTTTAGAAAAGGATACATG 919
Query 1558 TAAAGGAGCCTTGTTGGTTAATAATCTCGATTCTTCTATTTCGAATCAAGAGCTGAATCG 1617
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 920 TAAAGGAGCCTTGTTGGTTAATAATCTCGATTCTTCTATTTCGAATCAAGAGCTCAATCG 979
Query 1618 ACTGGTCAAATCGTATGGAGAGGTCAAAGAGATTCGTAGGACCATGCATGATAACTCACA 1677
||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||| ||||
Sbjct 980 CCTGGTCAAATCATATGGAGAGATCAAAGAGATCCGTAGAACCATGCATGATAACCCACA 1039
Query 1678 GATATACATAGAGTTCTTTGACGTTCGAGCTGCAGCAGCTGCTCTTGGTGGACTAAATGG 1737
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1040 GATATACATAGAGTTCTTTGACGTTCGAGCAGCAGCAGCTGCTCTTGGTGGACTAAATGG 1099
Query 1738 ACTTGAGGTTGCTGGGAAGAAGCTTCAACTTGTGCCGACCTATCCAGAGGGTACAAGATA 1797
|||||||||||| ||||||||||| ||||| ||| |||||| ||||||||||||||||||
Sbjct 1100 ACTTGAGGTTGCCGGGAAGAAGCTCCAACTGGTGGCGACCTGTCCAGAGGGTACAAGATA 1159
Query 1798 CACGTCGCAGTGTGCTGCAAATGATACTGAAGGGTGTCTACCTAAAACGTCTTATAGTAA 1857
|||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 CACGTCACAGGGTGCTGCACATGATACTGAAGGGTGTCTACCTAAAACGTCTTATAGTAA 1219
Query 1858 TACATCATCGGGACACATAGGTAGACATTTCCCAGGAATGATTTCTTCAACCTCCAGTGA 1917
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1220 TACATCATCGGGACACATAGGTAGACATTTCCCAGGAATGATGTCTTCAACCTCCAATGA 1279
Query 1918 TGGTGGATCTATGCGGGTTATACATAATTCTATTGGATCACCTGTGAATTCCTTCATTGA 1977
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1280 TGGTGGATCTATGCGGGTTATACATAATTCTGTCGGATCACCTGTGAATTCCTTCATTGA 1339
Query 1978 ACGACATCGTAGTCTCAGCATTCCTATTGGATTCCCACCTTCGGCAAACGGCATCTCAGC 2037
||| ||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 1340 ACGGCATCGGAGTCTCAGCATTCCTATTGGATTCCCACCCTCAGCAAACGCCATCTCAGC 1399
Query 2038 AAGTAAGCCTGTAGGACTTCAGGAGCATGGCCACCATTTTGATAATTCAAATATGGGGAT 2097
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 CAGCAAACCTGTAGGACTTCAGGAGCATGGCCACCATTTTGATAATTCAAATATGGGGAT 1459
Query 2098 CCAAAGCATGCCAAATCTCCATCCTCATTCTTTTTCGGAGTACGTCGACAACTTTGCAAA 2157
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1460 CCAAAGCATGCCAAATCTCCATCCTCATTCTTTTTCAGATTACGTGGACAACTTTGCAAA 1519
Query 2158 TGGTAGTCCATATACGTCCTCTGCATTTTCTGAAATGGTCAGTGATGGCTCAAAAGCAAA 2217
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1520 TGGTAGTCCATATAAGTCCTCTGCATTTTCTGAAATGGTCAATGATGGCTCAAAAGCAAA 1579
Query 2218 TGAAGGCTTTATGATACATAATGTTCGTGGAGTGGAAGGCTTTAGTGGAGGCGGTATAGG 2277
|||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1580 TGAAAGCTTTATGATACATAATGTTCGTGGAGTGGATGGCTTTAGTGGAGGGGGTATAGG 1639
Query 2278 ATCTCCCATGCATCAAAGCTCTCGCCGCCCT-A--TTAATTTATGGAGCAACTCTAACAC 2334
||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 1640 ATCTCCCATGCATCAAAGCTCCCGCCGCCCTAACCTTAATTTATGGAGCAACTCTAACAC 1699
Query 2335 TCAGCAACAAAATCCGTCAAGTGGCATGATGTGGCCTAACTCGCCATCTCACATCAACAG 2394
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 TCAGCAACAGAATCCGTCAAGTGGCATGATGTGGCCTAACTCGCCATCTCACATCAACAG 1759
Query 2395 CATTCCTACTCAGCGCCCACCTGTTACTGTATTCTCTAGAGCACCTCCTATAATGGTGAA 2454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 CATTCCTACTCAGCGCCCACCTGTTACTGTATTCTCTAGAGCACCTCCTATAATGGTGAA 1819
Query 2455 TATGGCATCTTCCCCTGTGCACCACCACATTGGATCTGCGCCGGTATTAAATTCTCCTTT 2514
||||||||||||||||||||| || || ||||||||||||||||||||||| || |||||
Sbjct 1820 TATGGCATCTTCCCCTGTGCATCATCATATTGGATCTGCGCCGGTATTAAACTCGCCTTT 1879
Query 2515 CTGGGACAGAAGACAAGCCTATGTAGCTGAATCTCTAGAATCATCTGGCTTCCACATAGG 2574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 CTGGGACAGAAGACAAGCCTATGTAGCTGAATCTCTAGAATCATCTGGCTTCCACATAGG 1939
Query 2575 TTCTCATGGTAGCATGGGGATTCCTGGCTCTTCACCATCACATCCAATGGACATTGGTTC 2634
|||| | || || ||| || ||| || | |||||||||||||
Sbjct 1940 TTCT--T-----CA--------CC---CTC---AC-ATC-CA---A-TGGACATTGGTTC 1972
Query 2635 TCATAAGACTTTCTCTGTTGGTGGGAATCGCATGGATGTAAATTCCCAAAATGCTGTCCT 2694
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 1973 TCATAAGACTTTCTCTGTTGGTGGGAATCGTATGGATGTAACTTCCCAAAATGCTGTACT 2032
Query 2695 GCGATCTCCTCAACAGTTATCTCATCTCTTTCCTGGAAGGAGTCCAATGGGTTCGATGCC 2754
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 GCGATCTCCTCAACAGTTGTCTCATCTCTTTCCTGGAAGGAGTCCAATGGGTTCGATGCC 2092
Query 2755 AGGGTCATTTGACTCGCCAAATGAACGATACAGGAATCTCTCTCACCGAAGAAGCGAATC 2814
|||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 2093 AGGGTCGTTTGACTCGCCAAATGAAAGATACAGGAATCTCTCTCACCGTAGAAGCGAATC 2152
Query 2815 TAGCTCTAGCAATGCTGACAAAAAACTGTATGAGCTTGACGTTGACCGTATATTACGTGG 2874
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2153 TAGCTCTAGCAATGCTGACAAGAAACTGTATGAGCTTGACGTTGACCGTATATTACGTGG 2212
Query 2875 GGAGGACAGGAGGACAACATTGATGATTAAAAACATTCCTAACAAGTACACTTCGAAGAT 2934
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2213 GGATGACAGGAGGACAACTTTGATGATTAAAAACATTCCTAACAAGTACACTTCTAAGAT 2272
Query 2935 GCTTCTATCTGCTATTGACGAGCATTGTAAAGGAACTTATGATTTCCTTTATTTGCCAAT 2994
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2273 GCTTCTATCTGCTATTGACGAGCACTGTAAAGGAACTTATGATTTCCTTTATTTGCCAAT 2332
Query 2995 TGACTTCAAGAACAAATGCAATGTGGGATATGCTTTCATCAATCTTATTGAACCTGAAAA 3054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2333 TGACTTCAAGAACAAATGCAATGTGGGATATGCTTTCATCAATCTTATTGAACCTGAAAA 2392
Query 3055 GATTGTCCCATTTTTTAAGGCATTTAATGGCAAAAAGTGGGAAAAGTTCAATAGCGAGAA 3114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393 GATTGTCCCATTTTTTAAGGCATTTAATGGCAAAAAGTGGGAAAAGTTCAATAGCGAGAA 2452
Query 3115 GGTGGCAACGCTTACGTATGCTCGTATCCAAGGGAAAACAGCTCTTATTGCCCATTTCCA 3174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2453 GGTGGCAACGCTTACGTATGCTCGTATCCAAGGGAAAACAGCTCTTATTGCCCATTTCCA 2512
Query 3175 GAACTCAAGCTTAATGAACGAAGACAAACGTTGCCGACCTATTCTCTTCCACACTGATGG 3234
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 2513 GAATTCAAGCTTAATGAACGAAGACAAACGTTGCAGACCTATTCTCTTCCACACTGACGG 2572
Query 3235 TCCAAATGCTGGTGATCAGGAACCATTTCCAATGGGAAGCAACATACGGTCAAGACCAGG 3294
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2573 TCCAAATGCTGGTGATCAGGAACCATTTCCAATGGGAAGCAACATACGATCAAGACCAGG 2632
Query 3295 CAAGCCACGAAGCAGTAGCATTGACAACTACAACAGCTTTAGCATCTCTTCCGTTTCTGA 3354
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2633 AAAGCCACGAAGCAGTAGCATTGATAACTACAACAGCTTTAGCATCTCTTCTGTTTCTGA 2692
Query 3355 AAACCGAGAAGAAACTCCTAATGGAACTGATCCGTTCT 3392
||||||||||||| ||||||||||||||||||||||||
Sbjct 2693 AAACCGAGAAGAACCTCCTAATGGAACTGATCCGTTCT 2730
> Ahg892659 jgi|Araly1|892659|Al_scaffold_0006_655
Length=2694
Score = 2030 bits (1099), Expect = 0.0
Identities = 2214/2735 (81%), Gaps = 146/2735 (5%)
Strand=Plus/Plus
Query 659 ATGCCGTCTGATATAATGGAACAGAGAGGTGTTTCAACACCTTCCCACTTTCATGAAGAT 718
||||||||||||||| |||||| |||||| | | |||||||| || |||||||||||
Sbjct 1 ATGCCGTCTGATATATTGGAACCCAGAGGTCTGCCTACACCTTCTCATTTTCATGAAGAC 60
Query 719 ATTCATATTACTTCAGAGAGGCAATTTGGGTTT-ATGAAAACAGACATGATGCCTGAAAA 777
|||| || ||| | |||| |||||| ||||| ||| ||| | ||| || || ||
Sbjct 61 ATTCGCATCACTCCTGAGAAACAATTT-GGTTTCATG-AAA-A-ACA--AT-CC--AATG 111
Query 778 CC--AAGGTGGTCGTGATAGACT-TTCAAGTATGCCAAAGAGTTCCTGGACATCTGAAAG 834
|| |||||||| | |||||| | ||||| | | || | ||||| ||||||||||| ||
Sbjct 112 CCTGAAGGTGGTGGGGATAGA-TGTTCAACTCTACCGACTAGTTCTTGGACATCTGACAG 170
Query 835 TTACCAGCTGAAGCCACAATCTAGTTTTTCTGGGTCGCACCCCT-CTGGTAGCCCTAACG 893
||||||||| || |||||| || || |||||| ||| |||| || || |||||| |
Sbjct 171 TTACCAGCTCTCGCAACAATCAAGCTTGTCTGGGGCGCTTCCCTCCT-TTATCCCTAATG 229
Query 894 CAAGAAACACTACAAATGGTAGTCAGTGGGAAAGCAGTTTATTTTCCAGCTCAATGTCTG 953
| | | ||||| || ||| ||||| |||||| ||||||||||||| ||||||
Sbjct 230 ---G----A--AGAAATGATACTCACTGGGAGAGCAGTCTATTTTCCAGCTCCCTGTCTG 280
Query 954 ATTTATTTAGTAGAAAGCTGCGGCTA-CAGGGAAGTGATATGCTATCCACTATGTCTGCA 1012
| ||||||||||||| | |||||| || || ||||||| | || || ||||||||||
Sbjct 281 ACCTATTTAGTAGAAAATTACGGCTACCACGG-AGTGATAAGTTAGCCTTTATGTCTGCA 339
Query 1013 AACACAGTTGTTACCCACCGTGAAGAAGAACCGTCT-GAATCTTTGGAAGAGATTGAGGC 1071
||| | | || | | |||||||| | | || || || ||||| || |||||
Sbjct 340 AAC-C-G-TG------A----G--GAAGAACC-TTTCGAGTCCTTAGAAGAAATGGAGGC 383
Query 1072 ACAAACTATTGGAAATCTTCTCCCAGATGAAGATGATCTTTTTGCAGAAGTGACAGGTGA 1131
|||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 384 GCAAACTATTGGAAATCTTCTTCCAGATGAGGATGATCTTTTTGCAGAAGTGGTTGGTGA 443
Query 1132 GGTTGGGCGTAAATCTCGTGCTAATACAGGAGATGAGTTGGATGAGTT-TGACCTCTTCA 1190
|| || | || |||||||| ||| |||||||| |||||||| || |||||| ||||
Sbjct 444 GGGTGTCCACAAGTCTCGTGCCAATGTTGGAGATGATTTGGATGA-TTGTGACCTATTCA 502
Query 1191 GCAGTGTTGGTGGCATGGAACTAGATGGAGATATTTTTTCTTCTGTGAG-TCATAGAAAT 1249
|||||||||||||||||||||||||||||||| | || || ||||| | ||| ||| ||
Sbjct 503 GCAGTGTTGGTGGCATGGAACTAGATGGAGATGTATTCTCGTCTGT-CGTTCAAAGAGAT 561
Query 1250 GGTGAGAGAGGTGGCAATAATTC---TGTTGGCGAGCTTAAC-CGTGGGGAAA-TTCCAT 1304
| ||||||| ||||| ||| |||||| |||| | | | ||| |||| || ||
Sbjct 562 AGCAAGAGAGGCAGCAATGTTTCGATTGTTGGTGAGCAT-CCTCATGGAGAAACTT-TAT 619
Query 1305 CCAGAACAC-TTTTGGTCGGAAATATCAG-TAGCAAT-GTTGAAGACTATGAGCTGAAGG 1361
|||||| || ||||| | || ||| | | |||| || ||||||| | ||||||| ||
Sbjct 620 CCAGAATACTTTTTGTTAGG-AATGT-GGATAGC-ATCATTGAAGATTGCGAGCTGAGGG 676
Query 1362 TCCTTTTTGAGCAATTTGGAGACATCCAGGCTCTTCATACAGCTTGCAAAAATCGTGGCT 1421
|||||||| |||||| |||||| |||| |||||||||||||||| | || | ||||||||
Sbjct 677 TCCTTTTTAAGCAATATGGAGATATCCGGGCTCTTCATACAGCTGGGAAGATTCGTGGCT 736
Query 1422 TTATCATGGTATCGTACTGTGATATAAGGGCTGCTCAGAATGCGGCGAGAGCACTCCA-G 1480
||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 737 TTATCATGGTATCATACCATGATATAAGATCTGCTCAGAATGCGGCGAGAGCACTCCACG 796
Query 1481 AATAAGCTGTTAAGAGGAACAAAACTTGACATTCGTTATTCTATCTCTAAGGAAAATCCT 1540
|| ||| ||||| |||| || ||||| ||||||||||||||| | |||||||||||
Sbjct 797 -GTAGGCTCTTAAGGGGAAGGAAGCTTGATATTCGTTATTCTATCCCAAAGGAAAATCC- 854
Query 1541 TCACAAAAAG-A-TACAAGTAAAGGAGCCTTGTTGGTTAATAATCTCGATTCTTCTATTT 1598
| ||| || | | | || ||||||| |||| ||| |||||||| ||||||||||| |
Sbjct 855 T---AAAGAGAACT-CCAGCGAAGGAGCATTGTGGGTAAATAATCTTGATTCTTCTATAT 910
Query 1599 CGAATCAAGAGCTGAATC-GACTGGTCAAATCGTATGGAGAGGTCAAAGAGATTCGTAGG 1657
| ||| ||||||| | | || | ||| || | |||||| | | |||| |||||||
Sbjct 911 CCAATGAAGAGCTTCA-CAGAATATTCAGTTCATGTGGAGAAATTAGAGAGGTTCGTAGA 969
Query 1658 ACCATGCATGATAACTCAC-AGATATACATAGAGTTCTTTGACGTTCGAGCTGCAGCA-G 1715
|| |||||||| ||||||| || | ||||||||||||||||| |||||| |||| | |
Sbjct 970 ACAATGCATGAGAACTCACAAG-TTTACATAGAGTTCTTTGATGTTCGAAAGGCAG-AGG 1027
Query 1716 CTGCTCTTGGTGGACTAAATGGACTTGAGGTTGCTGGGAAGAAGCTTCAACTTGTGCCGA 1775
||| ||| |||||||||||||||||||| ||||||| | ||||| |||||| || |
Sbjct 1028 TTGCACTTCAAGGACTAAATGGACTTGAGGTCGCTGGGAGGCAGCTTAAACTTGCACCAA 1087
Query 1776 CCTATCCAGAGGGTACAAGATACACGTCGCAGTGT-GCTGCAAATGATACTGAAGGGTGT 1834
||| ||||||||||||||| | | || | |||| | ||||| ||||| ||| ||| ||
Sbjct 1088 CCTGTCCAGAGGGTACAAGTTTCTCGCCACAGT-TCACTGCAGATGATGGTGAGGGGGGT 1146
Query 1835 CTACCTAA-A-ACGTCTTATAGTAATAC-ATCATCGGGACACATAGGTAGACATTTCCCA 1891
|||||||| | | | ||| || ||| | |||||| | ||| || || ||||||||||||
Sbjct 1147 CTACCTAATATA-G-CTTTTAATAA-CCTATCATCAGCACATATGGGGAGACATTTCCCA 1203
Query 1892 GGAATGATT-TCTTCAACCTCCAGTGATGGTGGATCTATGCGGGTTATACATAATTCTAT 1950
||||| ||| |||| ||||||| ||||||||||||||| || | | | || |||||| |
Sbjct 1204 GGAAT-ATTAGCTTCGACCTCCATTGATGGTGGATCTATTCGAGCTGTGCACAATTCTGT 1262
Query 1951 TGGATCACCTGTGAATTCCTTCATTGAACGACATC-GTAGTCTCAGCATTCCTATTGGAT 2009
||| ||||||||||| ||||||||||| || |||| | ||||||| |||||||||| |
Sbjct 1263 TGGGTCACCTGTGAACTCCTTCATTGAGCGTCATCAG-AGTCTCAATGTTCCTATTGGTT 1321
Query 2010 TCCCACCTTCGGCAA-ACGGCATCTCAGCAAGTAAGCCTGTAGGACTTCAGGAGCATGGC 2068
| ||||| ||||||| | | ||||||||| || |||||||| || ||||||||| |||
Sbjct 1322 TGCCACCATCGGCAAGA-GTCATCTCAGCTAGCAAGCCTGTTGGTCTTCAGGAGTTTGGA 1380
Query 2069 CA-CCATTTTGATAATTC-AAATATGGGGATCCAAAGCATGCCAAATCTCCATCCTCATT 2126
| ||| ||||||||||| ||| | |||||||||||| ||||||||||||||||||||
Sbjct 1381 AACCCA-TTTGATAATTCGAAA-ACGGGGATCCAAAGTATGCCAAATCTCCATCCTCA-- 1436
Query 2127 CTTTTTCGGAGTACGTCGACAACTTTGCAAATGGTAGTCCATATACGTCCTCT-G--CAT 2183
|||| | |||||| | ||||||||||||| ||||||||||||| |||||| | |||
Sbjct 1437 -TTTTCCTGAGTACCTTGACAACTTTGCAAGCGGTAGTCCATATAAATCCTCTAGTACAT 1495
Query 2184 TTTCTGAAATGGTCAGTGATGGCTC-AAAAGCAAATGAAGGCTTTATGATACATAATGTT 2242
| ||||||||||| || |||||| | |||||||||| | || | | | | |
Sbjct 1496 TCTCTGAAATGGTAAGCGATGGC-CAAAAAGCAAAT----G--TT-CG-T---GGA-G-T 1541
Query 2243 CGTGGAGTGGAAGGCTTTAGTGGAGGCGGT-ATAGGATCTCCCATGCATCAAAGCTCTCG 2301
| || || || || |||| |||||| || |||||||||||||| ||||| | || |
Sbjct 1542 -G-GGCGTAGATGGGTTTAATGGAGG-TGTCATAGGATCTCCCATAAATCAAGGATCCCA 1598
Query 2302 CCGCCCT-AT-T-AATTTATGGAGCAACTCTAACACTCAGCAACAAAATCCGTCAAGTGG 2358
||| | || | || |||||||| ||| |||||||||||||||| |||| |||||||||
Sbjct 1599 TCGCGGTAATCTCAACTTATGGAGTAACGCTAACACTCAGCAACATAATCAGTCAAGTGG 1658
Query 2359 CATGATGTGGCCTAACTCGCCATCTCACATCAACAGCATTCCTACTC-A-GC-GCCCACC 2415
|||||||||||||||||| ||||||| | ||||| |||||||| ||| | || ||| ||
Sbjct 1659 CATGATGTGGCCTAACTCACCATCTCGCGTCAACGGCATTCCTTCTCAACGCATCCCGCC 1718
Query 2416 TGTTACTGTATTCTCTAGAGCACCTCCTATAATGGTGAATATGGCATCTTCCCCTGTGCA 2475
|||||||| ||||||||||||| ||||| |||||||| |||||||| || ||||||||
Sbjct 1719 TGTTACTGCATTCTCTAGAGCATCTCCTCGGATGGTGAACATGGCATCATCGCCTGTGCA 1778
Query 2476 CCACCACATTGGATCTGCGCCGGTATTAAATTCTCCTTTCTGGGACAGAAGACAAGCCTA 2535
|||||||||||||||||| ||||||||||| || ||||| ||||| |||||||| || ||
Sbjct 1779 CCACCACATTGGATCTGCCCCGGTATTAAACTCACCTTTTTGGGATAGAAGACAGGCATA 1838
Query 2536 TGTAGCTGAATCTCTAGAATCATCTGGCTTCCACATAGGTTCTCATGGTAGCATGGGGA- 2594
|||||||||||||| |||||| || || || ||| |||||||||| |||||||| ||||
Sbjct 1839 TGTAGCTGAATCTCCAGAATCTTCAGGATTTCACTTAGGTTCTCACGGTAGCAT-GGGAT 1897
Query 2595 TTCCTGGCTCTTCACCATCACATCCAATGGACATTGGTTCTCATAA-G-ACTTTCTC-TG 2651
|||| ||||| || || |||||||||||||| || ||||||||||| | |||||| ||
Sbjct 1898 TTCCAGGCTCGTCTCCCTCACATCCAATGGAAATCGGTTCTCATAAGGTTTTTTCTCATG 1957
Query 2652 TTGGTGGGAATCGCATGGATGTAAATTCCCAAAATGCTGTCCTGCGATC-TCCTCAACAG 2710
|||||||||||||||||||| ||||| |||||||||| | ||||| | | | ||||
Sbjct 1958 TTGGTGGGAATCGCATGGATACCAATTCAAAAAATGCTGTATTACGATCAT-CGCGACAG 2016
Query 2711 TTATCTCATCTCTTTCCTGGAAGGAGTCCAATGGGTTCGA-TGCCAGGGTCATTTGACTC 2769
| |||| |||||| |||||||||| |||||| ||| | || |||| ||||||||||
Sbjct 2017 ATGCCTCACCTCTTTACTGGAAGGAGCCCAATGCTTTC-AGTGTCAGGCTCATTTGACTT 2075
Query 2770 GCCAAATGAACGATACAGGAATCTCTCTCACCGAAGAAGCGAATCTAGCTCTAGCAATGC 2829
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2076 ACCTAATGAACGATACAGGAATCTCTCTCACCGAAGAAGTGAATCTAGCTCTAGTAATGC 2135
Query 2830 TGACAAA-AAACTGTATGAGCTTGACGTTGACCGTATATTACGTGGGGAGGACAGGAGGA 2888
||| ||| ||||||||||||||||| ||||| || |||||||||||||| ||||| || |
Sbjct 2136 TGA-AAAGAAACTGTATGAGCTTGATGTTGATCGCATATTACGTGGGGACGACAGTAGAA 2194
Query 2889 CAACATTGATGATTAAA-AACATTCCTAACAAGTACACTTCGAAGATGCTTCTATCTGCT 2947
|||||||||||| |||| ||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 2195 CAACATTGATGA-TAAAGAACATTCCTAACAAGTATACTTCTAAGATGCTTCTAGCTGCT 2253
Query 2948 ATTGACGAGCATTGTAAAGGAACTTATGATTTCCTTTATTTGCCAATTGACTTCAAGAAC 3007
||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2254 ATTGATGAGTACTGTAAAGGAACATATGATTTCCTTTATTTGCCAATTGACTTCAAGAAT 2313
Query 3008 AAATGCAATGTGGGATATGCTTTCATCAATCTTATTGAACCTGAAAAGATTG-TCCCATT 3066
||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||| ||
Sbjct 2314 AAATGCAATGTGGGATATGCTTTCATCAACCTTACCGAACCTGAAAATATTGTTCCC-TT 2372
Query 3067 TTTTAAGGCATTTAATGGCAA-AAAGTGGGAAAAGTTCAATAGCGAGAAGGTGGCAACGC 3125
|| ||||||||| || || || ||| |||||||||||||| ||||||||||||||| | |
Sbjct 2373 TTATAAGGCATTCAACGGTAAGAAA-TGGGAAAAGTTCAACAGCGAGAAGGTGGCATCTC 2431
Query 3126 TTACGTATGCTCGTATCCAAGGGAAAA-CAGCTCTTATTGCCCATTTCCAGAACTCAAGC 3184
|| | |||| ||| || | |||||||| |||||||||||||||||||||||||||||||
Sbjct 2432 TTGCATATGGTCGGATTC-AGGGAAAATCAGCTCTTATTGCCCATTTCCAGAACTCAAGT 2490
Query 3185 TTAATGAACGAAGACAAACGTTGCCGACCTATTCTCTTCCACACTGATGGTCCAAATGCT 3244
|| ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 2491 TTGATGAACGAAGACAAACGTTGCAGGCCTATTCTCTTCCACACTGCTGGTCCAAATGCT 2550
Query 3245 GGTGATCAGGAACCATTTCCAATGGGAAGCAACATACGGTCAAGACCAGGCAAGCCACGA 3304
|||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||
Sbjct 2551 GGTGATCAGGAACCATTTCCAATGGGTTCCCACATCCGGTCAAGACCAGGCAAGCCTCGA 2610
Query 3305 AGCA-GTAGCATTGACAACTACAACAGCTTTAGCA 3338
| || ||||||| || ||||||| || ||||||||
Sbjct 2611 A-CAAGTAGCATCGAGAACTACACCAACTTTAGCA 2644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146864174207
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5