BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62070.1 Length=1475 Score E Sequences producing significant alignments: (Bits) Value Ahg496381 jgi|Araly1|496381|fgenesh2_kg.8__2197__AT5G62070.1 1977 0.0 Ahg940182 jgi|Araly1|940182|scaffold_600726.1 206 5e-52 > Ahg496381 jgi|Araly1|496381|fgenesh2_kg.8__2197__AT5G62070.1 Length=1419 Score = 1977 bits (1070), Expect = 0.0 Identities = 1317/1431 (92%), Gaps = 37/1431 (3%) Strand=Plus/Plus Query 47 TCTCAG-ATATTAAATAAAGTGTTAATCAACCGGAGAACTCTCCGACAAAACCTCGCCGA 105 |||||| | ||||||| |||||| |||| ||||||||| |||| || ||||| || |||| Sbjct 23 TCTCAGCA-ATTAAATGAAGTGTAAATCCACCGGAGAAATCTCTGATAAAACTTCTCCGA 81 Query 106 CGATTTTCCGACGATGAAAGATGGGCTTTTTCGGGAGACTGTTCGGGAGTaaaaaaaaGT 165 |||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| Sbjct 82 CGATTTTCCGACGATGAACGATGGGCTTTTTTGGGAGACTGTTCGGGAGT---AAAAAGT 138 Query 166 CTGATAAAGCTGCTTCGTCGAGAGATAAACGGAGGTGGAGCTTCACCACCAGATCTTCAA 225 |||||||| | ||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 139 CTGATAAATCAGCTCCGTCGAGAGATAAACGGAGGTGGAGCTTCACTACTAGATCTTCAA 198 Query 226 ATTCCAGCAAGAGAGCTCCGGCGGTGACGTCGGCTTCGGTGGTTGAGCAAAATGGTTTGG 285 |||||||||||||||||||||||| || | | | || |||| ||||||||| ||||||| Sbjct 199 ATTCCAGCAAGAGAGCTCCGGCGGCGAAGAC-G-TT-TGTGGATGAGCAAAACGGTTTGG 255 Query 286 ATGCTGACAAACATGCGATAGCTGTGGCTGCTGCGACAGCCGCGGTGGCGGAAGCAGCTC 345 |||| ||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||| Sbjct 256 ATGCCGACAAACATGCAATAGCCGTGGCTGCTGCGACCGCCGCGGTGGCTGAAGCAGCTC 315 Query 346 TTACTGCTGCTCATGCGGCAGCTGAAGTCGTGAGACTAACAAGCGGAAACGGCGGGAGAA 405 ||||||||||||||||||||||||||||||||||||| | | | || ||||||||| Sbjct 316 TTACTGCTGCTCATGCGGCAGCTGAAGTCGTGAGACT--C-A-C---AA--GCGGGAGAA 366 Query 406 ACGTCGGTGGCGGTGGAAACTCGTCGGTGTTTCAAATAGGAAGAAGTAACCGTCGGTGGG 465 | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 367 ATGGCGGTGGCGGTGGAAACTCGTCGGTGTTTCAAATCGGAAGAAGTAACCGTCGGTGGG 426 Query 466 CTCAGGAGAATATCGCGGCGATGAAGATTCAATCCGCTTTTCGTGGTTATCTGGCGAGGA 525 ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||| Sbjct 427 CTCAGGAGAATCTCGCGGCCAGGAAGATTCAATCCGCTTTTCGTGGTTATCTGGCAAGGA 486 Query 526 GAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAG 585 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 487 GAGCATTAAGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTTAGAGGACACATAG 546 Query 586 TGAGAAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTTGTTCGTCTTCAATCTC 645 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 547 TGAGAAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTGGTTCGTCTCCAATCTC 606 Query 646 AAGCTCGTGCTCGAGCCTCTCGTTCTTCTCACTCCTCTGCTTCTTTCCACTCCTCCACCG 705 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 607 AAGCTCGTGCTCGAGCCTCTCGTTCTTCTCACTCCTCTGCTTCTTTCCACTCCTCAACCG 666 Query 706 CTCTTTTGTTCCCATCTTCCTCGTCTTCTCCACGTTCTCTTCACACGCGCTGCGTTTCAA 765 |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 667 CTCTATTGTTCCCATCTTCCTCATCTTCTCCACGTTCTCTCCACACGCGCTGCGTTTCAA 726 Query 766 ACGCTGAAGTCAGCTCTCTTGACCACCGTGGAGGCTCTAAGCGGTTAGATTGGCAGGCGG 825 ||||||||||| |||| | |||||||||||||||||||| |||||||||||||| || | Sbjct 727 GCGCTGAAGTCATCTCTATGGACCACCGTGGAGGCTCTAAACGGTTAGATTGGCAAGCTG 786 Query 826 AGGAAAGCGAAAATGGAGACAAGATCCTAGAAGTGGATACTTGGAAGCCTCATTATCATC 885 ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 787 AGGAAGGCGAAGATGGAGACAAGATCCTAGAAGTGGATACTTGGAAGCCTCGTTATCATC 846 Query 886 CCAAACCGTTACGTTCAGAGAGAAACAATGAGTCTCCGAGGAAACGACAACAATCT-TTG 944 | |||||| |||||||||||||||||||||||||||| |||||| ||||||||||| || Sbjct 847 CGAAACCGCTACGTTCAGAGAGAAACAATGAGTCTCCAAGGAAAAGACAACAATCTCTT- 905 Query 945 TTGGGTCCGAGAAGTACAGAGAATAGTCCTCAAGTTGGTTCTAGTGGGTCAAGAAGAAGA 1004 ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 906 TTGGGTCCGAGAAGTACAGAGAACAGTCCTCAAGTTGGGTCTAGTGGGTCGAGAAGAAGA 965 Query 1005 ACTCCTTTTACGCCGACGTCAAGAAGCGAGTATTCTTGGGGATGTAATAACTATTACTAC 1064 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 966 ACTCCTTTTACGCCAACGTCAAGAAGTGAGTATTCTTGGGGATGTAATAACTATTACTAC 1025 Query 1065 TCGGGTTATCACCCGAATTACATGGCTAACACTGAGTCTTATAAAGCTAAAGTTCGGTCA 1124 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1026 TCGGGTTACCACCCGAATTACATGGCTAACACTGAGTCTTATAAAGCTAAAGTCCGGTCA 1085 Query 1125 CAAAGTGCGCCGAAACAGAGAGTTGAGGTCTCTAATGAGACCAGTGGCTACAAGAGATCT 1184 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1086 CAGAGCGCGCCGAAACAGAGAGTTGAGGTCTCTAATGAGACCAGTGGCTACAAGAGATCT 1145 Query 1185 GTTCAGGGACAGTATTACTACTACACAGCGGTAGAAGAAGAGAGTTTGGATGTTGGAAGC 1244 |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1146 GTTCAGGGACAGTATTACTACTACACGGCGGTAGCAGAAGAGAGTTTGGATGTTGGAAGC 1205 Query 1245 GCTGGTTACTACGGAGGAGGAGGAGGCGATTCTGATCGATTGAATCGGAACCAAAGTGCG 1304 | |||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 1206 CCCGGTTACTATGGAGGAGGAGT------TTCTGATCGATTGAATCGGAACCAAAGTGCA 1259 Query 1305 AAATCGAGGATGCATTCTTCGTTTCTTGTTTAGATTGTGATTCTCTTTCTCTTCtttttt 1364 |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| Sbjct 1260 AAATCGAGGATGCATTCTTCGTTTCTTGTTTAGATTATGATTCTCTTT-TCTT-TTT--- 1314 Query 1365 ttGGTTTGAGTTTGGTAATTTTCCAGAAGAGATAAGTAT-TAACACTGGATGTGTAAATT 1423 | |||||||||||||||||||||| ||||| |||| | |||| |||||||||||||| Sbjct 1315 --G-TTTGAGTTTGGTAATTTTCCAGGAGAGACAAGT-TGTAAC--TGGATGTGTAAATT 1368 Query 1424 GTTGTTAACAAGTTTCGATTGCTTGCAAAAGAAGGAACACCACTCTGTTCT 1474 ||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1369 GTTGTTAACAAGTTTCGATTGCTTGCAAAAGAAGGAACATAACTATGTTCT 1419 > Ahg940182 jgi|Araly1|940182|scaffold_600726.1 Length=1246 Score = 206 bits (111), Expect = 5e-52 Identities = 233/290 (80%), Gaps = 16/290 (6%) Strand=Plus/Plus Query 413 TGGCGGTGGAAACTCGTCGGTGTTTCAAAT-AGGAAGAAGTAACCGTCGGTGGGCTCAGG 471 ||| ||| ||||||||||||| ||||| | | | ||||| ||||||||| |||| | Sbjct 275 TGGTGGTAGAAACTCGTCGGTAAAACAAATCA-GTCGGAGTAATCGTCGGTGGTCTCAAG 333 Query 472 AGAATATCGCGGCGATGAAGATTCAATCCGCTTTTCGTGGTTATCT-GGCGAGGAGAGCA 530 || ||| |||||||||||||||||||||||||||||||| || || ||||||||| || Sbjct 334 AGTATAAAGCGGCGATGAAGATTCAATCCGCTTTTCGTGGCTA-CTTGGCGAGGAGGGCT 392 Query 531 TTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGG-ACACATAGTGAG 589 ||| ||||||| ||||||||||||||||||||||| ||||||| ||| |||||| || || Sbjct 393 TTAAGAGCACTGAAGGCATTAGTGAAGCTTCAAGCGTTAGTGA-AGGGACACATTGTAAG 451 Query 590 AAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTTGTTCGTCTTCAATCTCAAGC 649 |||||||| || |||||||| | | ||||| || || ||||| || | | |||| Sbjct 452 GAAACAAACGGCTGATATGCTGCGTCGAATGCAAACGCTGGTTCGGCT-C---C--AAGC 505 Query 650 TCGTGCTCGAGCCTCTCGTTCTTCTCAC-TCCTCTG-CTTCTTTCCACTC 697 || |||||||| || |||||||||||| | |||| || ||| |||||| Sbjct 506 ACGAGCTCGAGCTTCACGTTCTTCTCACGTT-TCTGACT-CTTCCCACTC 553 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55192765005 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5