BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62130.2 Length=2039 Score E Sequences producing significant alignments: (Bits) Value Ahg950977 jgi|Araly1|950977|scaffold_802864.1 1563 0.0 > Ahg950977 jgi|Araly1|950977|scaffold_802864.1 Length=1074 Score = 1563 bits (846), Expect = 0.0 Identities = 922/959 (96%), Gaps = 4/959 (0%) Strand=Plus/Plus Query 685 GTCATGTGTTGATCAATGTCAGAAAACTGGATGCGTGGGGGATACTTGCTTCCAACACTG 744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GTCATGTGTTGATCAATGTCAGAAAACTGGATGCGTGGGGGATACTTGCTTCCAACACTG 179 Query 745 TAAATTTTCAGCTGATGGAAAAGCCATTGACGGTCCATGGTACATGCAAGAGCCACTTTA 804 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 180 TAAATTTTCAGCTGATGGAAAAGCCATTGACGGTCCGTGGTACATGCAAGAGCCACTTTA 239 Query 805 CCTGAGATGGAAACAATGGGATTGCCAAAGTGATTGTCAGTACGAATGCATGATGACaag 864 ||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 240 CCTAAGATGGAAACAATGGGATTGCCAAAGTGACTGTGAGTACGAATGCATGATGACAAG 299 Query 865 agaagaagaaagaaaaagaaacggagagagaCCTACCAAGTATTTCGGTAAATGGCCACT 924 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 300 AGAAGAAGAAAGAAAAAGGAACGGAGAAAGACCTACCAAGTATTTCGGTAAATGGCCACT 359 Query 925 CAAACATGTCTACGGAATTCAGGAACCTGTCTCTGTTGCTTTCTCTGCTCTGGATCTTGC 984 |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 360 CAAACATGTCTACGGAATTCAGGAACCTGTGTCTGTTGCTTTCTCTGCTCTCGACCTTGC 419 Query 985 AATGCAGTTTCAAGGATGGGTCTCATATTTCATCCTCGTTTACTATAAATTGCCTCTCCA 1044 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GATGCAATTCCAAGGATGGGTCTCATATTTCATCCTCGTTTACTATAAATTGCCTCTCCA 479 Query 1045 GCCAAATCGGAAAACGTACTACGAGTACAATGGAATAGTGCATATCTACGCCATCATTGT 1104 |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| || Sbjct 480 GCCAAATCGGAAAACGTACTACGAGTACAACGGATTAGTGCATATCTATGCCATCATCGT 539 Query 1105 AATGAATTCACTCTTCTGGAGTAGTATTTGTCATAGCAGAGATGTTGAATTGACGGAGAG 1164 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 540 AATGAATTCACTCTTCTGGAGTAGTATTTGTCATACCAGAGATGTTGAATTGACGGTGAG 599 Query 1165 GCTAGATTACTCTTCAGCTACTGTATTAGCCGGATTTTCGCTTATTCTAGCAATACTCCG 1224 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 600 GCTAGATTACTCTTCAGCTACTGTATTAGCCGGATTTTCGCTTATTCTAGCAATACTTCG 659 Query 1225 GTCCTTCAGTATTCAAGATCAATCTGTCAAAATCATGGTTACTGCACCTATTCTTGCGGT 1284 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GTCTTTCAGTATTCAAGATCAATCTGTCAAAATCATGGTTACTGCACCTATTCTTGCGGT 719 Query 1285 TGTTGCAACTCATATTCTCTACCTTAATTTCTACAACCTCGATGAAGGGCTTCACTGGAA 1344 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 720 TGTTGCAACTCATATTCTCTACCTAAATTTCTACAACCTCGATGAAGGGCTTCACTGGAA 779 Query 1345 AGTTATATTCGGGATTGGAGGAATAGAGCTAGTAGTATGGGGATTATGGGCGGCTTTAAC 1404 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 780 AGTTATGTTCGGGATTGGAGGAATAGAGCTAGTAGTGTGGGGATTATGGGCGGCTTTAAC 839 Query 1405 GTCACATCCATCAAAGTGGAAGCTAAGAGCTTTCTTGATCTCGAGCATACTCACATTGTG 1464 ||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||| || Sbjct 840 GTCTCATCCATCGAAGTGGAAGCTAAGAGCTTTCTTCATCTCGGGCATACTCACATTATG 899 Query 1465 TCTTAGAATGTTCGACTTCCCTCCGTACAAAGGCTACATCGATGCTCATGCTCTTTGGCG 1524 |||||||||| |||| |||||||| |||||||||||| |||||||||||||||||||||| Sbjct 900 TCTTAGAATGCTCGATTTCCCTCCATACAAAGGCTACGTCGATGCTCATGCTCTTTGGCG 959 Query 1525 CGGTGCAGGGATTCCTCTTTCTTACCTTTGGTGGAGTTTCGTCTGCGATGACGCAGTTTT 1584 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CGGCGCAGGGATTCCTCTTTCTTACCTTTGGTGGAGTTTCGTCTGCGATGACGCAGTTTT 1019 Query 1585 CAGAACCACCGTTAATCTCAAGAAATCCAAGTGATCATGAACAAATGATACAAAAGTCT 1643 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1020 CAGAACCACCGTTAATCTCAAGAAATCCAAGTGAT---GAA-AAATGATACAAAAGTCT 1074 Score = 169 bits (91), Expect = 9e-41 Identities = 105/112 (94%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 300 GTTTTTGGTAATCGGATGGCGCGAAATCTGCCATGGGTTCTGCTTATTATTGTGGTATCG 359 |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | | Sbjct 7 GTTTTTGGTAATCGGATGGCGCGAAATCCGCCATGGGTTCTGCTTATTGTTGTGGTCTGG 66 Query 360 TGTCTTGTTTCAACACTTGAAGCTAGTGAAGGAGATTCTGATTCTCTTTACA 411 |||||||||||||| |||||||||||||| |||||||||||| ||||||||| Sbjct 67 TGTCTTGTTTCAACGCTTGAAGCTAGTGATGGAGATTCTGATCCTCTTTACA 118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76675663185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5