BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62140.1 Length=792 Score E Sequences producing significant alignments: (Bits) Value Ahg496390 jgi|Araly1|496390|fgenesh2_kg.8__2206__AT5G62140.1 1181 0.0 > Ahg496390 jgi|Araly1|496390|fgenesh2_kg.8__2206__AT5G62140.1 Length=756 Score = 1181 bits (639), Expect = 0.0 Identities = 726/766 (95%), Gaps = 13/766 (2%) Strand=Plus/Plus Query 3 GAGAAACATGGCTTCAACAAAAATAAACTCTTTAACAACAACAATCTACAATTACAAATC 62 ||||||||||| |||||||||||||||| | || |||||||| | | |||||||| Sbjct 1 GAGAAACATGGTTTCAACAAAAATAAACCCATT---AACAACAA--T-C---TACAAATC 51 Query 63 CCCAAGAAGATACATTAACCACAAATCCCAAAACCAAATCAAACTAATTTCAAATTCCCT 122 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52 CCCAAAAAGATACATTAACCACAAATCCCAAAACCAAATCAAACTAATTTCAAATTCCCT 111 Query 123 AAACCCAAAACCCAACACAACACAGCTTCCCAACACTCTCTACAGTGTCAGCTTCAAGAC 182 |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| Sbjct 112 AAACCCAAAACCCACCACAACACAGCTTCCCAATAATCTCTACAGTGTCAGCTTCAAGAC 171 Query 183 TATTGGAACAGGTAAGCTTGGCATCTCCAGATATCCCGATTTCGAATACTCTCCTCTAGG 242 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 172 TATTGGATTAGGTAAGCTTGGCATCTCCAGATATCCCGATTTCGAATACTCTCCTCAAGG 231 Query 243 TGGCTCTGGTGCCGGAACCGCCAAGAAAATCGACGACAAAAACAGAGCATCAAACTCTGA 302 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 TGGCTCCGGTGCCGGAACCGCCAAGAAAATCGACGACAAAAACAGAGCATCAAACTCTGA 291 Query 303 ATTGTCTGTTTGTTTCAATGTGGCCACTCTTTATATTCCTTCTCTCACTAGCCAAACCAC 362 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 292 ATTGTCAGTTTGTTTCAATGTGGCCACTCTGTATATTCCTTCTCTCACTAGCCAAACCAC 351 Query 363 GAAGTTTCTCGGCTTTCCATTGCCACCGTTTCTAAAAATCGATATCTCACCGGAGATTTT 422 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 352 GAAGTTTCTCGGCTTTCCATTGCCACCGTTTCTAAGAATCGATATCTCACCGGAGATTTT 411 Query 423 CCAAGGAACTATCAACCAAGAATCCGGGAAGGTGGAATTGGAGTTTATGGCGAAGTTCTT 482 ||| ||||||||| | ||||||||||||||||||||||| ||||| | |||||||||||| Sbjct 412 CCAGGGAACTATCGATCAAGAATCCGGGAAGGTGGAATTAGAGTTCACGGCGAAGTTCTT 471 Query 483 TTTCACGGCGGGAGGAGGGATATACAGAGCTCCGGCGTTGGTGGTGAGAACTGTGTTGAC 542 |||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||| Sbjct 472 TTTCACGGCGGGAGGAGGGATATACAGAGCTCCGGCGTTGGTTGTTAAAACTCTGTTGAC 531 Query 543 GACGGAGGAATCGATAGGAGAGAAC-AAGAGAGGGAAAGGAGAGAGACTGGACGAAGAAG 601 |||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||| Sbjct 532 GACGGAGGAATCGATAGGAGTG-ACAAAGAGAGGGAAAGGAGAGAGAATGGACGAAGAAG 590 Query 602 GAAAGTGTAGACTCGTCGGCGTCGCGAAAGTTGAGACCA-TCGACGATTTGTTTATGAAC 660 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 591 GAAAGTGTAGACTCGTCGGCGTCGCGAAAGTTGAGA-CAGTCGACGATTTGTTTATGAAC 649 Query 661 ACGTTCCTCTCTCTTCCGGCGGAGTGTCTCGCCGATCTACAAGCTATTATTTCAGTCTCT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 ACGTTCCTCTCTCTTCCGGCGGAGTGTCTCGCCGATCTACAAGCTATTATTTCAGTCTCT 709 Query 721 GATAATCAATCTTGAATCTTAATGATAAACCATAAATATTTGAGTT 766 ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 710 GATAATCAATCTTGAATCTTAATGATAAAGCATAAATATTTGAGTT 755 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29240277339 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5