BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62190.1 Length=2384 Score E Sequences producing significant alignments: (Bits) Value Ahg496396 jgi|Araly1|496396|fgenesh2_kg.8__2212__AT5G62190.1 3496 0.0 Ahg950092 jgi|Araly1|950092|scaffold_801979.1 176 6e-43 Ahg945676 jgi|Araly1|945676|scaffold_701905.1 176 6e-43 Ahg931085 jgi|Araly1|931085|scaffold_303542.1 172 8e-42 > Ahg496396 jgi|Araly1|496396|fgenesh2_kg.8__2212__AT5G62190.1 Length=2358 Score = 3496 bits (1893), Expect = 0.0 Identities = 2221/2375 (94%), Gaps = 39/2375 (2%) Strand=Plus/Plus Query 8 TTTGTCGTCTCTCCCTGCTTTCGCAC-TTC-ATAGCCTCAATCTCTCAACAAGCAGAAGA 65 |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| Sbjct 1 TTTGTCGTCTCTCCCTGCTTTCGCACTTTCAATAGCCTCAATCTCTCAAAAAGCAGAAGA 60 Query 66 GATTCGATTCTCCATTATCTTCCTTCTAAATGCCTTCCCTAATGTTATCTGATaagaaag 125 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 GATTCGATTCTCCATTATCTTCCTTCTAAATGCCTTCACTAATGTTATCTGATAAGAAAG 120 Query 126 aggagaagaagatgaagaagaagaTGGCTTTGGATACCCCAGAGCTTGATTCTAAGAAGG 185 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 121 AGGAGAAGAAGATGAAGAAGAAGATAGCTTTGGATACCCCAGAGCTTGATTCTAAGAAGG 180 Query 186 GGAAGAAGGAGCAGAAGCTGAAACTATCTGATTCGGATgaagaagagtcggagaagaaga 245 |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 181 GGAAGAAGGAGCCGAAGCTGAAACTATCTGATTCTGATGAAGAAGAGTCGGAGAAGAAGA 240 Query 246 agagtaagaagaaggataagaagcgtaaggcttccgaggaggaggatgaagtgaagaGCG 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGAGTAAGAAGAAGGATAAGAAGCGTAAGGCTTCCGAGGAGGAGGATGAAGTGAAGAGCG 300 Query 306 ATTCAAGCTCGGAGAAGAAGAAGAGCAGCAAGAAGGTTAAGTTGGGCGTTGAGGATGTTG 365 |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 301 ATTCGAGCTCGGAGAAGAAGAAGAGCAGCAAGAAGGTTAAGTTGGGTGTTGAAGATGTTG 360 Query 366 AAGTTGATAACCCTAATGCTGTTTCTAAGTTTCGGATTTCTGCGCCTTTGAGGGAGAAGC 425 |||||||||||||||||||| |||| || |||||||||||||| || ||||||||||||| Sbjct 361 AAGTTGATAACCCTAATGCTATTTCCAATTTTCGGATTTCTGCTCCGTTGAGGGAGAAGC 420 Query 426 TTAAGGCGAATGGTATTGAAGCTCTTTTCCCGATTCAGGCTTCCACGTTTGATATGGTTC 485 |||||||||| |||||||||||||||||||||||||| ||| | || ||||||||||||| Sbjct 421 TTAAGGCGAAGGGTATTGAAGCTCTTTTCCCGATTCAAGCTACAACTTTTGATATGGTTC 480 Query 486 TCGATGGTGCTGATTTAGTTGGACGGGCTCGTACTGGTCAGGGTAAAACATTGGCTTTTG 545 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 481 TCGATGGTGCTGATTTAGTTGGACGTGCTCGTACTGGTCAGGGTAAAACATTGGCTTTTG 540 Query 546 TGTTGCCTATATTGGAATCTTTGGTTAATGGACCTGCCAAAAGCAAAAGGAAGATGGGAT 605 ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 541 TGTTGCCTATATTGGAATCGTTGGTTAATGGACCTGCCAAAAACAAAAGGAAGATGGGAT 600 Query 606 ATGGCAGGTCACCAAGTGTTTTGGTCCTTTTACCGACCAGAGAATTGGCCAAGCAGGTGG 665 ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 601 ATGCCAGGGCACCAAGTGTATTGGTCCTTTTACCGACCAGAGAATTGGCCAAGCAGGTGG 660 Query 666 CTGCTGACTTTGATGCATATGGAGGATCACTTGGGTTAAGTTCATGTTGTCTCTATGGAG 725 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 661 CTGCTGACTTTGATGCATATGGAGGATCACTTGGGTTAAGTTCATGTTGTATCTATGGAG 720 Query 726 GTGATAGCTATCCAGTTCAGGAGGGTAAATTAAAGAGAGGTGTTGACATTGTAGTTGGAA 785 ||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||| Sbjct 721 GTGATAGCTATACAGCTCAGGAGAATAAATTAAGGAGAGGTGTTGACATTGTAGTTGGAA 780 Query 786 CCCCTGGTCGTATTAAGGATCATATTGAAAGACAAAACCTTGATTTCAGCTATTTACAAT 845 |||||||||||||||||||||||||||| ||||||||| ||||| ||||| || | |||| Sbjct 781 CCCCTGGTCGTATTAAGGATCATATTGAGAGACAAAACATTGATCTCAGCCATCTGCAAT 840 Query 846 TCCGTGTTCTTGATGAAGCTGATGAAATGTTGAGGATGGGATTTGTTGAGGATGTTGAAC 905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TCCGTGTTCTTGATGAAGCTGATGAAATGTTGAGGATGGGATTTGTTGAGGATGTTGAAC 900 Query 906 TTATTTTAGGGAAAGTGGAGGATTCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTT 965 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 901 TTATATTAGGGAAAGTGGAGGATCCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTT 960 Query 966 TGCCATCATGGGTGAAAAATATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTG 1025 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TGCCATCATGGGTGAAAAATATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTG 1020 Query 1026 ATCTTGTTGGTAATGATAAAATGAAGGCCAGTAATAGTGTTCGACACATTGCTATTCCTT 1085 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 1021 ATCTTGTTGGTAATGATAAAATGAAGGCCAGTAATAGTGTTCGACACATCGCTATACCCT 1080 Query 1086 GTAATAAGGCAGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGTGGAG 1145 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GTAATAAGGCGGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGTGGAG 1140 Query 1146 GCCAAACTATTATTTTCGCTGA-AACTAAAGTTCAAGTTTCTGAGCTTTCTGGTTTGTTG 1204 ||||||| |||||||||||||| || ||| | ||||||| |||||||||||||||||| Sbjct 1141 GCCAAACCATTATTTTCGCTGAGAA-GAAAAATGAAGTTTCCGAGCTTTCTGGTTTGTTG 1199 Query 1205 GATGGATCAAGAGCCTTGCATGGTGAAATACCTCAATCACAACGTGAGGTTACTCTTGCT 1264 | ||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 1200 GCTGGGTCAAGAGCCTTGCATGGTGAAATACCTCAAGCTCAACGTGAGGTTACTCTTGCT 1259 Query 1265 GGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTGCTGCTCGTGGTCTA 1324 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1260 GGATTTAGGAATGGCAAGTTTTCGACATTGGTGGCTACAAATGTTGCTGCTCGTGGTCTA 1319 Query 1325 GATATCAATGATGTGCAGTTAATTATCCAGTGTGAGCCTCCACGTGAAGTTGAAGCATAT 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 GATATCAATGATGTGCAGTTAATTATCCAGTGTGAGCCTCCACGTGAAGTTGAAGCATAT 1379 Query 1385 ATTCATCGTTCAGGCCGAACAGGAAGAGCTGGCAACACAGGAGTTGCGGTTACACTCTAC 1444 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct 1380 ATTCATCGTTCAGGCCGAACAGGAAGAGCTGGCAACACTGGAGTTGCAGTTACGCTCTAC 1439 Query 1445 GATTCTAGAAAGTCGAGTGTATCCAGGATCGAAAAAGAAGCTGGTATCAAATTTGAGCAC 1504 || |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| || Sbjct 1440 GAGTCTAGAAAGTCGAGTGTATCAAGGATCGAAAAGGAAGCTGGTATAAAATTTGAGTAC 1499 Query 1505 CTTGCTGCACCTCAACCTGATGAAATTGCCAGATCTGGTGGTATGGAAGCTGCTGAGAA- 1563 || |||||||||| |||||||| ||||||||| ||| ||||||||||||||||||||| Sbjct 1500 ATTTCTGCACCTCAGCCTGATGATATTGCCAGAGCTGTTGGTATGGAAGCTGCTGAGAAT 1559 Query 1564 AGTTAAACAAGTGTGTGACAGTGTGGTTCCTGCATTCCTTGAAGCTGCCAAGGAATTATT 1623 | ||||| |||| |||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 1560 A-TTAAAAAAGTCTGTGACAGTGTGGTTCCTGCATTCCTGGGAGCTGCCAAGGAATTATT 1618 Query 1624 AGAAACTTCTGGTTTATCAGCTGAAGTACTCCTCGCAAAAGCTCTTGCAAAAACTGCGGG 1683 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1619 AGAATCTTCTGGTTTATCAGCTGAAGTACTCCTCGCAAAAGCTCTTGCAAAAACAGCGGG 1678 Query 1684 CTTCACTGAGATAAAGAAAAGGTCACTTCTTACATCAATGGAGAACTATGTGACACTACA 1743 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1679 CTTCACTGAGATAAAGAAAAGGTCACTTCTTACATCAATGGAGAACCATGTGACACTACA 1738 Query 1744 TCTTGAAGCAGGGAAACCAATATACTCGCCATCATTTGTTTATGGACTGCTAAGGAGAGT 1803 ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| Sbjct 1739 TCTTGAAGCAGGGAAACCAATGTACTCGCCATCATATGTTTATGGATTGCTAAGGAGAGT 1798 Query 1804 TTTACCGGATGACAAGGTGGAA-ATGATTGAAGGGTTATCTCTAACAGCAGATAAAA-CA 1861 |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| | Sbjct 1799 TTTACCAGATGACAAGGTGGAACA-GATTGAAGGGTTATCTCTAACAGCAGATAAAAGC- 1856 Query 1862 GGAGCTGTGTTCGATGTTAAGCAATCAGATCTAGACTTGTTCATTGCAGGAGCACAAAAG 1921 ||||| ||||| |||||||||||||| ||||||| ||||||| |||||| | ||||||| Sbjct 1857 GGAGCAGTGTTTGATGTTAAGCAATCGGATCTAGCCTTGTTCCTTGCAGCTGGACAAAAG 1916 Query 1922 AGTGCTGGAAGTATGAGTTTGGAAGTGGTTAAGGTGATGCCTAAACTCCAGGAGAGAGAA 1981 ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||| Sbjct 1917 AGTGCTGGAAGTATGAGCTTGGAAGTGGTTAAGGAGATGCCTAAACTTCAGGAGAGAGAA 1976 Query 1982 CCATTGCCACAAAAAAGATTcggtggtggtggcaga-ggaaatcggtttgg---tggtgg 2037 ||||||||||||||||||| |||| | || | | ||||| |||||||| |||||| Sbjct 1977 CCATTGCCACAAAAAAGATACGGTCGCAATG-CTGGTGGAAACCGGTTTGGAGGTGGTGG 2035 Query 2038 tggaggaaatcggtttggcggtggtggtggcagaggaagaggaggcagtggtggtAGAGG 2097 ||| |||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2036 TGGTGGAAATCGGTTTGG---TGGTGGTGGCAGAGGAAGAGG------TGGTGGTAGAGG 2086 Query 2098 CCAGAGATATTGAAAACTGGAACCCAACTTCTC-CT--TTCT-ATATAAAAAGAAACTAA 2153 |||||||||||||||||| |||||||||||||| || || | ||| ||||||| ||||| Sbjct 2087 CCAGAGATATTGAAAACTCGAACCCAACTTCTCTCTCCTTTTGATAAAAAAAGATACTAA 2146 Query 2154 ACTCCGTCTTATAATTTCATTACTATCTTCTTCCGCTGATGTTTTCTACACTATAATAGG 2213 ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 2147 ACTCCCTCTTATAATTTCATTACTATCTTCTTGCGCTGATGATTTCTACACTATAATAGG 2206 Query 2214 TGGCTTTTCTGTGT-TTT-CCATTTTCTTT--C---CTT-GAACAAACTTATGGAGGCTC 2265 || |||||||||| ||| || |||| ||| | ||| ||||||||||| |||||||| Sbjct 2207 TG--TTTTCTGTGTGTTTTCCGTTTTTTTTTTCTTTCTTTGAACAAACTTAAGGAGGCTC 2264 Query 2266 TCTTGTACCCTCTTATCAATTTTGTGTAATGTTGGATGATAATGATGATTAAATTATAAC 2325 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 2265 TCTTGTGTCCTCTTATCAATTTTGTGTAAT-TTGGATGATAATGATGATTAAATTATTAC 2323 Query 2326 TTCGTCACTCATTGGAATTGTTTTGTAAGTTTCAA 2360 ||||||||| || |||||||||||||| ||||||| Sbjct 2324 TTCGTCACTAATGGGAATTGTTTTGTAGGTTTCAA 2358 > Ahg950092 jgi|Araly1|950092|scaffold_801979.1 Length=759 Score = 176 bits (95), Expect = 6e-43 Identities = 101/104 (97%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1251 AGGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTG 1310 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 191 AGGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTTCTACATTGGTGGCTACAAATGTTG 250 Query 1311 CTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATCCAG 1354 |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 251 CTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATTCAG 294 > Ahg945676 jgi|Araly1|945676|scaffold_701905.1 Length=759 Score = 176 bits (95), Expect = 6e-43 Identities = 101/104 (97%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1251 AGGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTG 1310 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 191 AGGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTTCTACATTGGTGGCTACAAATGTTG 250 Query 1311 CTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATCCAG 1354 |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 251 CTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATTCAG 294 > Ahg931085 jgi|Araly1|931085|scaffold_303542.1 Length=723 Score = 172 bits (93), Expect = 8e-42 Identities = 99/102 (97%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1253 GTTACTCTTGCTGGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTGCT 1312 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 157 GTTACTCTTGCTGGATTTAGGAATGGCAAGTTTTCGACATTGGTGGCTACAAATGTTGCT 216 Query 1313 GCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATCCAG 1354 |||||||||||||||||||||||||||||||||||||| ||| Sbjct 217 GCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATTCAG 258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89816797710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5