BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62240.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496400 jgi|Araly1|496400|fgenesh2_kg.8__2216__AT5G62240.1 1801 0.0
> Ahg496400 jgi|Araly1|496400|fgenesh2_kg.8__2216__AT5G62240.1
Length=1343
Score = 1801 bits (975), Expect = 0.0
Identities = 1181/1278 (92%), Gaps = 24/1278 (2%)
Strand=Plus/Plus
Query 185 TCGAGGATTGATAATGGTTCCCGAATCATCATCGAGGAT-AATGAGTTTTTCTGGCGATG 243
|||||||| ||| |||||||| ||||||||||| || ||| ||||||||||| ||||
Sbjct 74 TCGAGGATCGATTATGGTTCCGGAATCATCATC----ATCAATAAGTTTTTCTGGAGATG 129
Query 244 ATTTCGAATTCGATATTGATTTCGAATTCGATGCACCGAGGTTCTATGATTTCTCTAGAC 303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 130 ATTTCGAATTCGATATTGATTTCGAATTCGATGCACCGAGGTTTTATGATTTCTCTAGAC 189
Query 304 CTGAGCTTTATTCCGAGACTGAAGAAATCGAAATCTGGTTTCAATCCTCTGGAAACTATC 363
| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 190 CAGAGCTTGATTCCGAGACTGAAGAAATCGAAACCTGGTTTCAATCCTCTGGAAACTATC 249
Query 364 CTCCTTCACCTTTTAGCCCAAAGTTCAATTGGAAATTTGAGCCATTTAAGCAAATTACAA 423
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 250 CTCCTTCACCTTTTAGCCCAAAATTCAATTGGAAATTTGAGCCGTTTAAGCAAATTACAA 309
Query 424 ACACCATATCAGAGTCTAAGCCTGTGGAGATTATTGAATCCT-C--GGA-AGCCGAGACC 479
| ||||||||||| ||||||||||||||||| || ||||||| | ||| | |||| |||
Sbjct 310 ATACCATATCAGACTCTAAGCCTGTGGAGATCATCGAATCCTCCTTGGATA-CCGATACC 368
Query 480 GGTTTGAATTGCAAAGATAAATTCAACGGCTTCATATATTATAACCAAACCGTTAAAGAT 539
||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 369 GGTCTGAATCGCAAAGATAAATTCAACGGGTTCATATATTACAACCAAACCGTTAAAGAT 428
Query 540 GTATCCAAGAAAAAATCGAAATCTAAAACCAAAACAAGTAACTCTACTTTGACAAGACCT 599
|| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 429 GTGTCCAATACAAAATCGAAATCTAAAACCAAACCAAGTAACTCTACTTTGACAAGACCT 488
Query 600 ACGGCTTCTTTGCTTGCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTG 659
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 489 ACGGCTTCTTTGCTTGCAAGGCAGAACAAACCGTTAGACATTTACTCTGTTCAACTTCTG 548
Query 660 ACAAGATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTCTCT 719
|||||||||||| | || |||||||||||||||||||| ||| | ||| |||||||||||
Sbjct 549 ACAAGATGTCAGAGGTCTTTAGCCAAGTTTGGTGAAAACGTATCACCGATCTTAGTCTCT 608
Query 720 AAGTTACAAAACCAAGACACCAATAGGCAAAAACA-GGAAGCTAAGGTGGCTCATGTTAG 778
|| |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 609 AAATTACAAAACCAAGACACCAATAGGCAAAAA-ATGGAAGCTAAGGTGGCTCCTGTTAG 667
Query 779 CAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGA 838
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CAGAAGAACCAAACTCACTGTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGA 727
Query 839 AAGACACAGGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG 898
||| |||||||||||||||||| || ||| ||||||||||||||||||| |||||||||
Sbjct 728 AAGGCACAGGTCTAAGGTTAACTCAGAGACCGAGCAGATTGCGACATCAAGTTCTAAAAG 787
Query 899 ACACATTAGGAACAAAAATATTAATCTGGAACCTGT-TTCAACATCTTTGGCTAAAACTA 957
|||||||||||||||||||||||||||||||||| | |||||||||| || | |||| ||
Sbjct 788 ACACATTAGGAACAAAAATATTAATCTGGAACCT-TCTTCAACATCTCTGCCCAAAAGTA 846
Query 958 ATACGCCACGGTCCCAACATTTTCAGGCATTTCGTTTAAGGACATCACTGAGAGCGAAGG 1017
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 847 ATACACCACGGTCCCAACAGTTTCAGGCATTTCGTTTAAGAACATCACTGAGAGCAAAGG 906
Query 1018 AACGCTCTTCAAATGCTAAAACCGATGTCGTACAAGAGAATGATGCTACTAAGTCCAGAA 1077
||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |||||||
Sbjct 907 AACGCTCTTCAAATGCTAAAATCGATGTCATACAAGAAAATGATGCTACTAACTCCAGAA 966
Query 1078 CACTAAAAA------AGCCCATTGATTCCTTAAAAACTAGGATAGTCAAAGAAAATCACA 1131
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 967 CACTAAAACGTTCTCAGCCCATTGATTCCTCAAAAACTAGGATAGTCAAAGAAAATCACA 1026
Query 1132 GCAGAAAGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGATAT 1191
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1027 GCAGAAAGATAAATTGCCAAGTGTATGAATCTAAAACTTCCCCTCTAGACCCAAAGGTAT 1086
Query 1192 CAAGCAAAG-AAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGC 1250
||||||||| || || ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1087 CAAGCAAAGGAAAAC-TCGGTGGAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGC 1145
Query 1251 AGGACAGATATTAACAGGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCA 1310
||||||||||||| ||||||||||||||| |||||||| ||||| || ||||||||||||
Sbjct 1146 AGGACAGATATTAGCAGGAGCCTGGATTTATGCCGGAAGTTCGACTCACAGGAAGTTGCA 1205
Query 1311 AGGAACCTAATCACTGCTTAATCTTCATTTTGAAGATGTTCTTTCATTTTTTATACATGT 1370
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1206 AGGAACCTAATCACTGCTTAATCTTCACCTTGAAGATGTTCTTTCATGTTTTATACATGT 1265
Query 1371 AACACACGCATTCCTATGTCTATATA-A-GTAAACGTGTATACTTGTTTAGATATATGCA 1428
|||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |
Sbjct 1266 AACACACGCATTCCTATGTCTATATATAAGTAAACATGTATACTTGTTTAGATATATGGA 1325
Query 1429 TAGAGAAAGAGAtttttt 1446
||||||| ||||||||||
Sbjct 1326 TAGAGAATGAGATTTTTT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5