BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62360.1
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496413 jgi|Araly1|496413|fgenesh2_kg.8__2229__AT5G62360.1 822 0.0
> Ahg496413 jgi|Araly1|496413|fgenesh2_kg.8__2229__AT5G62360.1
Length=591
Score = 822 bits (445), Expect = 0.0
Identities = 561/613 (92%), Gaps = 23/613 (4%)
Strand=Plus/Plus
Query 51 ATGGGTGAATCTTTTAGATTATTCAATCATCATCACTTCCTCACAACTTTTCTCATAATC 110
|||||||||||||||| | |||||| ||||||||||||||||| || ||||| |||||
Sbjct 1 ATGGGTGAATCTTTTA-A--ATTCAACCATCATCACTTCCTCACGTCTCTTCTCGTAATC 57
Query 111 ATAGCCATGCTCAAATTGGTTCATacaacaacaacaacaactacaacaacaacaacaaac 170
|||||||| ||||||| || | | | | |||||||||||||||||||
Sbjct 58 ATAGCCATTCTCAAATCGG-T--T-------------C-A-TACAACAACAACAACAAAC 99
Query 171 aCCGAGTTCGTAAAATCATCATGCACTTTCACAACGTACCCAAGACTCTGTTTCTCTTCA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 ACCGAGTTCGTAAAATCATCATGCACTTTCACAACGTACCCAAGACTCTGTTTCTCTTCA 159
Query 231 CTCTCAACTCATGCTAGTCTCATCCAAACAAGCCCCAAGCTCATGGCTCATGCGGCTCTC 290
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 160 CTCTCAACTCATGCCAGTCTCATCCAAACAAGCCCCAAGCTCATGGCTCACGCGGCTCTC 219
Query 291 AACATCACATTAGCCTCGGCTAAAGTAACTTCAGCAATGATGGTGCGTCTCTCGAATAGT 350
||||| ||||||||||| ||||||| |||||||||||||||||||||||| || ||||||
Sbjct 220 AACATAACATTAGCCTCTGCTAAAGCAACTTCAGCAATGATGGTGCGTCTGTCAAATAGT 279
Query 351 CGGCTCAAGCCTAA-AGAAGTCTCGGCCATGAGAGACTGCGTCGAGGAGTTAGGTGACAC 409
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 280 CGGCTCAAGCC-AAGAGAAGTCTCGGCCATGAGAGACTGCGTCGAGGAGTTAGGTGACTC 338
Query 410 GTTGGAGGAGCTTAGGAAATCGATTGGTGAGATGTGTCAGCTAAGTGGCTCGAACTATGA 469
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 339 GTTGGAGGAGCTTAGAAAATCGATTGGTGAGATGTGTCGGCTAAGTGGCTCGAACTATGA 398
Query 470 AGTTTACATAAGCGATATACAGACTTGGGTCAGTGCGGCTTTGACAGATGTGAACACATG 529
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 GGTCTACATGAGCGATATACAGACTTGGGTCAGTGCGGCTTTGACAGATGTGAACACATG 458
Query 530 TACTGACGGATTTGAAGGAGAAGATATGGACGGGAAGGTTAAGGTTTTGGTTAGAGGGAG 589
||| || |||||||||||||| || ||| | |||||||||||||||||||||||||||||
Sbjct 459 TACGGATGGATTTGAAGGAGACGACATGAATGGGAAGGTTAAGGTTTTGGTTAGAGGGAG 518
Query 590 GATTTTGGTTATTGCTCATTTAACAAGTAATGCTTTAGCTTTGATTAATCACTTTGCTTC 649
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 519 AATTTTGGTTATTGCTCATTTAACGAGTAATGCTTTGGCTTTGATTAATCACTTTGCTTC 578
Query 650 TATTCATGGCTAA 662
|||||||||||||
Sbjct 579 TATTCATGGCTAA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30078981513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5