BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62430.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951020 jgi|Araly1|951020|scaffold_802907.1 1314 0.0
> Ahg951020 jgi|Araly1|951020|scaffold_802907.1
Length=901
Score = 1314 bits (711), Expect = 0.0
Identities = 843/903 (93%), Gaps = 23/903 (3%)
Strand=Plus/Plus
Query 175 AAGCTCTTTGGTATGAAAATTCCTTTCCCGACGGTTTTAGAGG-T--TGCTGAT---GAA 228
||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||
Sbjct 9 AAGCTCTTTGGTATGAAAATTCCTTTCCCGACGGTTTTAGAGGTTACTACTGATGAAGAA 68
Query 229 GAAGAAGAAAAGAACCAAAACAAGACATTAACTGATCAATCGGAGAAAGACAAAACCCTA 288
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 69 GAAGAAGAAAAGAACCAAAACGAGACGTTAACTGATCAATCGGAGAAAGACAAAACCCTT 128
Query 289 AAGAAACCAACCAAGATTCTTCCATGTCCAAGATGCAACAGCATGGAGACTAAGTTCTGT 348
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 129 AAGAAACCAACCAAGATTCTTCCATGTCCAAGATGCAACAGCATGGAGACAAAATTCTGT 188
Query 349 TACTACAACAACTACAACGTAAACCAACCTCGCCATTTTTGTAAAGCTTGTCAGAGATAT 408
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 189 TACTACAACAACTACAACGTAAACCAACCTCGCCATTTTTGTAAAGCCTGTCAGAGATAT 248
Query 409 TGGACCTCAGGTGGGACCATGAGAAGTGTTCCAATCGGAGCAGGACGGCGCAAGAACAAG 468
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 249 TGGACCTCTGGTGGGACCATGAGAAGTGTTCCCATCGGAGCAGGACGACGCAAGAACAAG 308
Query 469 AACAACTCA----C--CAACTTCACATTACCACCATGTGACTATCTCCGAAACAAATGGT 522
||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 309 AACAACTCATCGTCATCAACTTCACATTACCACCACGTGACTATCTCCGAAACAAATGGT 368
Query 523 CCGGTCCTTAGTTTCAGCCTCGGAGATGATCAAAAGGTCTCGAGTAATAGGTTTGGTAAT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 369 CCGGTCCTTAGTTTCAGCCTCGGAGATGATCAAAAGGTCTCGAGTAATAGGTTCGGGAAT 428
Query 583 CAAAAGCTAGTTGCTAGGATAGAGAACAATGACGAGCGCTCTAATAACAACACTTCGAAC 642
| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 429 CCAAAGCTAGTGGCTAGGATAGAGAACAATGACGAGCGCTCAAATAACAACACTTCGAAC 488
Query 643 GGTTTGAATTGTTTTCCGGGAGTTTCGTGGCCGTACACGTGGAATCCTGCGTTTTACCCG 702
| | || | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 --T--GC-TT-T---CCAGGAGTTTCGTGGCCGTACACGTGGAATCCTGCGTTTTACCCG 539
Query 703 GTTTACCCTTATTGGAGCATGCCAGTGTTGTCTTCTCCGGT-AAGTTCAAGTCCTACTTC 761
||||||||||| |||| ||| ||| |||||||||||||||| || |||||||||||||||
Sbjct 540 GTTTACCCTTACTGGAACATTCCAATGTTGTCTTCTCCGGTTAA-TTCAAGTCCTACTTC 598
Query 762 TACTCTTGGTAAGCATTCGAGAGACGAAGACGAGACGGTGAAGCAAAAACAGAGGAATGG 821
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 599 TACTCTTGGTAAGCATTCGAGGGACGAAGACGAAACGGTGAAGCAAAAACAGAGGAACGT 658
Query 822 ATCTGTATTGGTTCCAAAGACTTTGAGAATTGATGATCCTAATGAAGCTGCAAAGAGTTC 881
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 659 ATCTGTATTGGTTCCTAAGACTTTAAGAATTGATGATCCTAATGAAGCTGCAAAGAGTTC 718
Query 882 GATATGGACAACACTTGGGATCAAGAACGAAGTTATGTTCAATGGGTTTGGTTCGAAGAA 941
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 719 TATATGGACAACACTTGGTATCAAGAACGAAGTTATGTTCAATGGGTTTGCTTCGAAGAA 778
Query 942 AGAGGTTAAGCTCAGTAACAAAGAAGAAACAGAGACCTCACTTGTTCTTTGTGCAAACCC 1001
|||||||||| | | ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 779 AGAGGTTAAGATTAATAACAAAGAAGAAACAGAGACTTCTCTTGTTCTTTGTGCAAACCC 838
Query 1002 TGCTGCGTTATCAAGATCAATCAATTTCCATGAGCAGATGTGATTGTATACATATGATAT 1061
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 TGCTGCGTTATCAAGATCAATCAATTTTCATGAGCAGATGTGATTGTATACATATGATAT 898
Query 1062 ATA 1064
|||
Sbjct 899 ATA 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5