BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62470.2 Length=1745 Score E Sequences producing significant alignments: (Bits) Value Ahg496423 jgi|Araly1|496423|fgenesh2_kg.8__2239__AT5G62470.1 1777 0.0 Ahg937505 jgi|Araly1|937505|scaffold_501696.1 556 1e-157 Ahg919629 jgi|Araly1|919629|scaffold_100910.1 267 3e-70 Ahg336488 jgi|Araly1|336488|fgenesh1_pg.C_scaffold_1003053 230 4e-59 > Ahg496423 jgi|Araly1|496423|fgenesh2_kg.8__2239__AT5G62470.1 Length=1221 Score = 1777 bits (962), Expect = 0.0 Identities = 1176/1269 (93%), Gaps = 55/1269 (4%) Strand=Plus/Plus Query 244 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAG 303 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 60 Query 304 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 120 Query 364 CCAAC-ACACACAGGTTTGAGAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTA 422 ||||| | |||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 121 CCAACTA-ACACAGGTTT--G-AGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTA 176 Query 423 TCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACAATTGTTCA 482 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 177 TCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACTATTGTTCA 236 Query 483 TCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGAC 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGAC 296 Query 543 AGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAAAAGATTAA 602 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 297 AGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAGAAGGTTAA 356 Query 603 TGAATCTGGTGAAGAAGATAATGATGGTGTCTCTTCATCAAACACTAGTTCACAAAAGAA 662 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 357 TGAATCTGGTGAAGAAGATAATGATGGTGTCTCCTCATCAAACACTAGCTCACAAAAGAA 416 Query 663 CCATCAAAGCACTAACAAAGGTCAATGGGAAAGAAGACTTCAGACAGACATTAACATGGC 722 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 417 CCATCAAAGCACTAACAAAGGTCAATGGGAAAGAAGACTTCAGACAGATATTAACATGGC 476 Query 723 AAAACAAGCTCTTTGTGAGGCCTTGTCTTTAGACAAACCATCATCCACTCTTTCATCATC 782 ||||||||||||||||||||||||||||||||||||| | ||| || |||||| Sbjct 477 AAAACAAGCTCTTTGTGAGGCCTTGTCTTTAGACAAA-C--CAT-CA-----TCATCA-- 525 Query 783 TTCATCATTACCGACACCAGTAATCACACAACAAAACATCCGTAACTTCTCATCAGCTTT 842 ||||| || ||||||||||||||||| ||||||||||||| || ||||||||||||||| Sbjct 526 -TCATCGTTGCCGACACCAGTAATCACGCAACAAAACATCCATAGCTTCTCATCAGCTTT 584 Query 843 GCTTGACCGTTGTTATGATCCATCCTCTTCTTCTTCATCT---ACCACAACCACCACTAC 899 |||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||| Sbjct 585 GCTTGACCGTTGTTATGATCCATCCTCTTCTTCTTCCTCTACAACCACAACTACGACTAC 644 Query 900 AAGCAACACTACTAATCCATACCCATCAGGGGTATATGCGTCAAGTGCTGAGAACATCGC 959 |||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 645 AAGCAATACTACCAATCCACACCCATCAGGTGTATATGCGTCAAGTGCTGAGAACATCGC 704 Query 960 CCGGTTGCTTCAAGATTTCATGAAAGACACACCCAAGGCTTTAACTTTATCATCTTCATC 1019 |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 705 TCGGTTGCTTCAAGATTTCATGAAAGACACACCAAAGGCTTTAACTTTATTATCTTCATC 764 Query 1020 TCCGGTTTCAGAGACTGGACCACTCACTGCTGCAGTCTCGGAAGAAGGTGGAGAAGGGTT 1079 ||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 765 TCCAGTTTCAGAGACCGGACCACTCGCTGCTGCAGTCTCGGAAGAAGGTGCAGAAGGGTT 824 Query 1080 TGAACAATCTTTCTTCAGCTTCAATTCAATGGACGAAACTCAAAACTTGACTCAGGAGAC 1139 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 825 TGAACAATCTTTCTTCAGCTTCAATTCAATGGAAGAAACTCAAAACTTGACTCAGGCGAC 884 Query 1140 AAGCTTCTTCCATGATCAAGTGATCAAACCGGAAATAACAATGGACCAAGATCATGGTCT 1199 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | Sbjct 885 AAGCTTCTTCCATGATCAAGAGATCAAACCGGAAATAATAATGGACCAAGATCATGGTTT 944 Query 1200 AATATCACAAGGGTCTCTGTCTTTGTTTGAGAAATGGTTATTTGATGAGCAAAGCCACGA 1259 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 945 AATATCACAAGGGTCTCTGTCTTTGTTGGAGAAATGGTTATTTGATGAGCAAAGCCACGA 1004 Query 1260 GATGGTTGGTA---TGGCACTAGCAGGACAAGAAGGGATGTTCTAGTTCTAGAAGACTGT 1316 ||||||||||| ||||||||| |||||||||||||||||||||||||| ||| Sbjct 1005 GATGGTTGGTATGGTGGCACTAGAAGGACAAGAAGGGATGTTCTAGTTCT---AGA---- 1057 Query 1317 CTAGAACTAACAAAGTGGGATCTTTTTAAAATTGAGGGCTTAATTAGTTATGAGTTATAA 1376 || || | ||||| || ||||||||||||||||||||||||||||| Sbjct 1058 --AG-----AC---------T-TTTTT-AAGTTGAGGGCTTAATTAGTTATGAGTTATAA 1099 Query 1377 CAAATAATATAGAGTTATAACCTATGATATATATGCTTATTATTGCTTTAGGGTTTTAGA 1436 ||||||||||||||||||||||||| || |||||||||||| ||||||||||||| Sbjct 1100 CAAATAATATAGAGTTATAACCTAT-AT------GCTTATTATTGCATTAGGGTTTTAGA 1152 Query 1437 GTCTTTAGTAGCTAGCTTTTAGCTCTACAACACTCTTTTCCCCTTTTGGTGATATAAATC 1496 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1153 GTCTTTAGTAGCTAGCTTTTAGCTCTACAACACTCTTTTTCCCTTTTGGTGATATAAATA 1212 Query 1497 TCTCTTTTT 1505 ||||| ||| Sbjct 1213 TCTCTCTTT 1221 > Ahg937505 jgi|Araly1|937505|scaffold_501696.1 Length=1043 Score = 556 bits (301), Expect = 1e-157 Identities = 466/542 (86%), Gaps = 25/542 (5%) Strand=Plus/Plus Query 244 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAG 303 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 23 ATGGGAAGACCACCATGCTGTGACAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAG 82 Query 304 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 363 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 83 GAAGATATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTG 142 Query 364 CCAACACACACAGGTTTGAGAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTAT 423 || || || ||||||||||| ||||||||||| || || |||||||| |||||||||||| Sbjct 143 CCTACTCATACAGGTTTGAGGAGATGTAGCAAAAGTTGTAGATTGAGGTGGACTAATTAT 202 Query 424 CTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACAATTGTTCAT 483 |||||||| || ||||||||||||||||| || |||||||||||||||| ||| | ||| Sbjct 203 CTTCGACCTGGGATTAAGCGTGGAAATTTCACCGAGCATGAAGAGAAGATGATTCTCCAT 262 Query 484 CTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGACA 543 |||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 263 CTTCAAGCTCTTTTGGGCAACAGGTGGGCAGCTATAGCATCATACCTTCCAGAAAGGACA 322 Query 544 GACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAAAAGATTAAT 603 |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||| Sbjct 323 GACAATGATATAAAGAACTATTGGAACACTCATTTGAAGAAAAAGCTCAAGAAGATGAAT 382 Query 604 GAATCTGGTGA-AGAAG-AT-AATGATGGTGTCTCTTCATCAA-ACA-CTAGT--TCA-- 654 || ||| |||| || | || || |||| | | | || || || || | ||| Sbjct 383 GATTCTTGTGATAGTACTATCAACAATGGCCT-TGATGATAAAGACTTCTCTTCATCAAA 441 Query 655 CAAAAG-A--AC--CA--TCAAAGCA-CTA----A-CAAAGGTCAATGGGAAAGAAGACT 701 ||||| | || || |||||||| | | | ||||||||||||||| ||||| || Sbjct 442 CAAAAACACTACTTCACATCAAAGCAGCAACCCCAGCAAAGGTCAATGGGAGAGAAGGCT 501 Query 702 TCAGACAGACATTAACATGGCAAAACAAGCTCTTTGTGAGGCCTTGTCT-TTAGACAAAC 760 ||||||||| || |||||||| ||||||||||||||||| ||||||||| || ||||||| Sbjct 502 TCAGACAGATATCAACATGGCTAAACAAGCTCTTTGTGATGCCTTGTCTCTT-GACAAAC 560 Query 761 CA 762 || Sbjct 561 CA 562 > Ahg919629 jgi|Araly1|919629|scaffold_100910.1 Length=934 Score = 267 bits (144), Expect = 3e-70 Identities = 294/364 (81%), Gaps = 20/364 (5%) Strand=Plus/Plus Query 244 ATGGGAAGACCACCTTGCTGTGAAAAGAT-TGGAGTGAAGAAAGGGCCATGGACACCAGA 302 ||||| || || || |||||||| ||||| ||| | |||||||| |||||||| || || Sbjct 21 ATGGGTAGGCCTCCATGCTGTGACAAGATAGGGA-TCAAGAAAGGACCATGGACTCCTGA 79 Query 303 GGAAGACATCA-TCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 361 ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 AGAAGATATCATTCTT-GTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTG 138 Query 362 T-CCCAACACACACAGGTTTGA--GAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTA 418 | |||| || | || || | | || |||| ||||| || || ||| | |||||||| | Sbjct 139 TTCCCACCA-ATACTGGGCT-ACTGA-GATGCAGCAAAAGTTGTAGACTCAGATGGACAA 195 Query 419 ATTATCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACA--AT 476 ||||||| |||| || ||||| |||||||| |||||| |||||||| | || | || Sbjct 196 ATTATCTGAGACCTGGAATTAAACGTGGAAACTTTACTCCTCATGAAGA-AGGA-ATGAT 253 Query 477 TGTTCATCTT-CAAGCCCTT-TTAGGCAACAGATGGGCAG-CCATAGCATCATACCTTCC 533 |||| ||| |||||| || || || |||| |||||| | ||||||| ||||| || || Sbjct 254 CATTCA-CTTGCAAGCC-TTATTGGGTAACAAATGGGC-GTCCATAGCTTCATATCTACC 310 Query 534 AGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAA 593 | |||| || ||||||||||| |||||||| |||||||| || ||||||||||||||||| Sbjct 311 ACAAAGAACGGACAATGATATCAAGAACTACTGGAACACACATTTGAAGAAGAAGCTCAA 370 Query 594 AAAG 597 ||| Sbjct 371 CAAG 374 > Ahg336488 jgi|Araly1|336488|fgenesh1_pg.C_scaffold_1003053 Length=486 Score = 230 bits (124), Expect = 4e-59 Identities = 131/134 (98%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 244 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAG 303 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAG 60 Query 304 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTC 120 Query 364 CCAAC-ACACACAG 376 ||||| | |||||| Sbjct 121 CCAACTA-ACACAG 133 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65477131155 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5