BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62480.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496425 jgi|Araly1|496425|fgenesh2_kg.8__2241__AT5G62480.1 1147 0.0
Ahg936976 jgi|Araly1|936976|scaffold_501167.1 76.8 2e-13
> Ahg496425 jgi|Araly1|496425|fgenesh2_kg.8__2241__AT5G62480.1
Length=797
Score = 1147 bits (621), Expect = 0.0
Identities = 732/784 (93%), Gaps = 13/784 (2%)
Strand=Plus/Plus
Query 50 aaaaaaTGGATGAAGAAGTTGAGAACAAAGTGATACTCCATGGATCATTCGCGAGTCCTT 109
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 AAAAAATGGATGAAGAAATTGAGAACAAAGTGATACTCCATGGATCATTCGCGAGTCCTT 77
Query 110 ACAGCAAAAGGATTGAGTTAGCCCT-AAGGCTTAAATCCATACCTTACCAATTCGTGCAA 168
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 78 ACAGCAAAAGGATTGAGTTAGCACTCAA-GCTTAAATCCATACCTTACCAATTCGTGCAA 136
Query 169 GAAGATCTCCAGAACAAGAGCCAAACCCTGCTCCGGTATAACCCGGTTCACAAGAAGATC 228
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 137 GAAGATCTCCAGAACAAGAGCCAAACCCTTCTCCGGTACAATCCGGTTCACAAGAAGATC 196
Query 229 CCGGTTCTTGTCCACAACGGTAAACCCATCTCTGAGTCCTTGTTTATCATTGAATACATC 288
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 197 CCGGTTCTCGTCCACAACGGTAAACCCATCTCTGAATCCTTATTTATCATTGATTACATC 256
Query 289 GACGAAACGTGGAGTAA-CGGTCCACATATTTTGCCAGAAGACCCTTATAGAAGATCTAA 347
|||||||||||||| || ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 257 GACGAAACGTGGAG-AAGCGGACCACATCTTTTGCCAGAAGACCCTTATAGAAGATCTAA 315
Query 348 AGTCCGGTTTTGGGCTAACTACATCCAATTACATCTTTACGATTTGGTGATAAAAGTGGT 407
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 316 AGTCCGGTTTTGGGCTAACTACATCCAATTACACCTTTACGATGTGGTGATAAAAGTGGT 375
Query 408 GAAAAGCGAAGGAGAAGAGCAAAAGAAAGCTCTCACAGAAGTAAAGGAGAAGCTGAGCGT 467
||||||| |||||||||||||| ||| |||||||||||| || |||||||||||||| ||
Sbjct 376 GAAAAGCCAAGGAGAAGAGCAAGAGAGAGCTCTCACAGAGGTGAAGGAGAAGCTGAGAGT 435
Query 468 TATAGAGAAAGAAGGGCTTAAGGAGATTTTCTCTGACACTGATGGTGAACCAACTGTGAC 527
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 436 GATAGAGAAAGAAGGGCTTAAGGAGATTTTCTCTGACACTGATGGTGAACCGACCGTGAC 495
Query 528 GAACGAGACCATGAGCCTCGTAGACATTGTGATGTGCACTTTGCTTAGCCCTTACAAGGC 587
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 496 AAACGAGACCATGAGCCTCGTAGACATTGTGATGTGCACTTTGCTTAGTCCTTACAAGGC 555
Query 588 ACACGAAGAAGTTTTGGGTCTGAAAATTATTGACCCAGAGATAGTTCCTGGTGTCTACGG 647
|||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 556 ACACGAAGAAGTATTGGGTCTGAAGATTATAGACCCAGAGATTGTTCCTGGTGTCTACGG 615
Query 648 GTGGATCAATGCTATAAACGAAACCAGCGTGGTCAAAGATCTAAGTCCTCCTTATGAACA 707
||| |||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 616 TTGGCTCAATGCTATTAACGAAACCAGTGTGGTCAAAGAGCTAAGTCTTCCTTATGAACA 675
Query 708 AATCCTAGAGATTCTTCGGGCTTTCAGACAGATGTCTCTCTCTCCCGTTCTTGAAACTTA 767
| |||||||||||||| ||| ||||||||||||||||||||| || |||| |||||||||
Sbjct 676 AGTCCTAGAGATTCTTAGGGTTTTCAGACAGATGTCTCTCTC-CC-GTTCCTGAAACTTA 733
Query 768 TCAGTCATAACTCTTAAGTTTTGGATTGCTTGATGCAAAGTTATAAAATTATGTGCTCTG 827
|||||| | | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 734 TCAGTC-T---T---AAGTTTTGGATTGCTTGATGCAAAGTTATAAAATTATGTTCTCTG 786
Query 828 TTTT 831
||||
Sbjct 787 TTTT 790
> Ahg936976 jgi|Araly1|936976|scaffold_501167.1
Length=728
Score = 76.8 bits (41), Expect = 2e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 208 AACCCGGTTCACAAGAAGATCCCGGTTCTTGTCCACAACGGTAAACC 254
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 172 AACCCGGTTCACAAGAAGATCCCGGTTCTCATCCACAACGGTAAACC 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5