BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62610.1 Length=1252 Score E Sequences producing significant alignments: (Bits) Value Ahg496441 jgi|Araly1|496441|fgenesh2_kg.8__2257__AT5G62610.1 1932 0.0 > Ahg496441 jgi|Araly1|496441|fgenesh2_kg.8__2257__AT5G62610.1 Length=1198 Score = 1932 bits (1046), Expect = 0.0 Identities = 1156/1207 (96%), Gaps = 16/1207 (1%) Strand=Plus/Plus Query 1 ATTATCACTACCCACATCTGTCTTACCTTCTCCGATCTCTCTCTCTATTTGTCCACCTCA 60 ||||||||| || ||| | |||||||||||||||||||||||||| ||||||||||||| Sbjct 1 ATTATCACTTGCCTCATATCTCTTACCTTCTCCGATCTCTCTCTCTGTTTGTCCACCTCA 60 Query 61 CACACAACCCTATAAACAAGACAAGACCTCGCAAAGCTCAAACCTTTTCCTTCttttttt 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 61 TACACAACCCTATAAACACGACAAGACCTCGCAAAGCTCAAACCTTTTCCTTC--TTTTT 118 Query 121 CTATCAAGTTCCTCACTTCTCGGATCCGGGTCCTAAATCTGGGTCAACCCTTTTTACGAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 119 CTATCAAGTTCCTCACTTCTCGGATCCGGGTCCTAAATCTGGGTCAACCC-TTTTACGAT 177 Query 181 CATCGGAAATGGACCCTCCACTAGTGAACGATTCCTCCTTCTCTGCAGCTAATCCTTCTT 240 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 178 CATCGGAAATGGACCCTCCACTTGTGAACGATTCCTCCTTCTCCGCAGCTAATCCTTCTT 237 Query 241 CTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTCGCTCTGGTCTCC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTCGCTCTGGTCTCC 297 Query 301 GTTTAGCTGTTAACTCCGGTCGAGTCTTTACTCGCTCTGAACATTCCGGCAATAAAGACG 360 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 298 GTTTAGCCGTTAACTCCGGTCGAGTCTTCACTCGGTCTGAACATTCCGGCAATAAAGACG 357 Query 361 TCTCCGCGGCTGAGGAATCTACAGTCACCGATCTAACTGCTGGCTGGGGAAGTAGAAAGA 420 |||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 358 TCTCGGCGGCAGAGGAATCTACTGTCACCGATCTAACTGCTGGCTGGGGAGGTAGAAAGA 417 Query 421 CTAGAGATTTGAACTCTGAGGATGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTA 480 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 418 CTAGAGATTTGAACTCTGAGGACGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTA 477 Query 481 ATGAATTGAAAGAATCAGGGGATAAGAAAAGAAAACTGTGTGGATCTGAAAGTGGAAATG 540 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 478 ATGAATTGAAAGAATCAGGCGATAAGAAAAGAAAACTTTGTGGATCTGAAAGTGGAAATG 537 Query 541 GAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTGG---AAGCAAAG 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 538 GAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTGGTGGAAGCAAAG 597 Query 598 CAACGGAACAGAAGAACAAACCTGAGCCACCAAAGGATTATATTCATGTGAGAGCAAGAA 657 |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| Sbjct 598 CAACGGAACAGAAGAACAAACCAGAGCCACCGAAGGATTATATCCATGTGAGAGCAAGAA 657 Query 658 GAGGACAAGCTACTGACCGGCATAGTTTAGCAGAGCGAGCTAGAAGAGAAAAGATCAGTG 717 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 658 GAGGACAAGCTACTGACCGGCATAGTCTAGCAGAGCGAGCTAGAAGAGAAAAGATCAGTG 717 Query 718 AGAAGATGACAGCTCTTCAAGATATAATTCCAGGATGTAATAAGATAATCGGAAAAGCCC 777 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 718 AGAAGATGACAGCTCTTCAAGATATAATTCCGGGATGTAATAAGATAATCGGAAAAGCCC 777 Query 778 TTGTGCTCGATGAGATTATCAATTATATTCAGTCATTGCAGCGGCAAGTTGAGTTTCTAT 837 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 778 TTGTGCTCGATGAGATTATCAATTATATTCAGTCGTTGCAGCGGCAAGTTGAGTTTCTGT 837 Query 838 CAATGAAGCTAGAAGTTGTTAACTCGGGTGCAAGTACTGGTCCGACAATAGGAGTTTTTC 897 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 838 CAATGAAGCTAGAAGTTGTTAACTCAGGTGCAAGTACTGGTCCAACAATAGGAGTTTTTC 897 Query 898 CTTCCGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATACGAGCAACAAG 957 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 898 CTTCTGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATATGAGCAACAAG 957 Query 958 AAGCTAATGAAACCCGAGTATCTCAACCGGAGTGGCTCCATATGCAGGTTGATGGGAACT 1017 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 AAGCTAACGAAACCCGAGTATCTCAACCGGAGTGGCTCCATATGCAGGTTGATGGGAACT 1017 Query 1018 TTAACCGAACCACATAAAAAAGA-GTCTTTCTCTGATTGATGGATGTGTTTTGTAGGCAG 1076 ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct 1018 TTAACCGAACCACATAAAAAAAAAGTCTTTCTTTGATTGATGGATGTGTTTTGTAGGCAG 1077 Query 1077 TAAAAATGAATGCAACCCTTTATTTTTTATCCTATGCGTGTGTATCATTTTGCTGTTATA 1136 |||||||||||||||||||||||||||| || | | |||||||||||||||||||||| Sbjct 1078 TAAAAATGAATGCAACCCTTTATTTTTTTTC-T--G--TGTGTATCATTTTGCTGTTATA 1132 Query 1137 TCAT-A-A-GATAGAATATGAGAGTGACCAGAGAGATTAACACTTTATAAAACATTGTTG 1193 |||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1133 TCATCATAAGATAGA-TATGAGAGTGACCAGAGAGATTAACACTTTATAAAACATTGTTG 1191 Query 1194 TATTGTC 1200 ||||||| Sbjct 1192 TATTGTC 1198 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46776819159 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5