BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62630.1
Length=2284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496445 jgi|Araly1|496445|fgenesh2_kg.8__2261__AT5G62630.1 3400 0.0
> Ahg496445 jgi|Araly1|496445|fgenesh2_kg.8__2261__AT5G62630.1
Length=2270
Score = 3400 bits (1841), Expect = 0.0
Identities = 2128/2263 (94%), Gaps = 34/2263 (2%)
Strand=Plus/Plus
Query 30 agagagagagagagaATTGTGTTGTTGCATAGTTCCAATAATGGCAAAGACGAATCAAG- 88
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 34 AGAGAGAGAGAGAGGATTGTGTTGTGGCATAGTTCCAATAATGGCAAAGACGATTCAAGC 93
Query 89 C--CATCACTATCTGTTCCCTTCTTCTGCTTCTTCTACTCTCTGAAACAACTTCTCA-CC 145
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 94 CATCATCACTATCTGTTCCCTTCTTCTGCTTCTTCTACTCTCTGCAACAACTTCTCATCC 153
Query 146 TTCTTTGCTCAGATTCAAAGACTCCAGTCAACAACAACGAGACACTCCAGTTCTGCGATT 205
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 154 -TCTTTGCTCAGATTCAAAGACTCCAGTTAACAACAACGAGACACTCCAGTTCTGCGATT 212
Query 206 CCTACAAA-GAAAGATCTTGCTGCAATTCTAAAGATGATCTTCAATTACAGAATCGCTTC 264
|||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 213 CCTACAAAGGAAA-AACTTGCTGCAATTCCAAAGATGATCTTCAATTACAGAATCGCTTC 271
Query 265 AACTCCATGAACATCTCTGACTCTAATTGTTCTTCTCTTCTCAAATCCATTCTCTGTTCT 324
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct 272 AACTCCATGAACATCTCTGACTCCAATTGTTCTTCCCTTCTCAAATCCATTCTTTGCTCT 331
Query 325 AAATGTGATGAATTCTCAGGACAATTGTTTGGTGATGATGATAGTTCTCTAGTTCCAATT 384
||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 332 AAATGTGATCAATCCTCAGGACAATTG-TT--TGATGATGATAGTTCTCTAGTTCCAATT 388
Query 385 CTCTGCAACTCAACATCACAAGACTTATGTTCAAAACTTTGGGATTCATGTCAGAACATT 444
|| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 389 CTTTGCAACTCAACTTCACAAGACTTATGCTCAAAGCTTTGGGATTCATGTCAGAACATT 448
Query 445 TCCATTGTTTCTTCTCCTTTTAGTCCCACTCTACTTGGTGGTGCTACTTCGCCTTCAACT 504
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 449 TCCATTGTTTCTTCTCCTTTTAGTCCCACTCTACTAGGTGGTGCTACTTCCCCTTCAACT 508
Query 505 TCATCAAATTCATCGACATTAACCGATCTTTGGAAATCCCAAACCGAATTCTGTACAGCC 564
|| || |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 509 TCCTCCAATTCATCAACATTAACCGATCTTTGGAAATCCCGAACCGAATTCTGTACCGCC 568
Query 565 TTTGGTGGACCATCTCAAACCAACAACAACAAAACCAAATGCTTCAATGGTGAACCGGTT 624
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 569 TTTGGTGGACCATCTCAAACCAACAACAACAAAACCAAATGCTTTAATGGTGAACCGGTT 628
Query 625 AACAGAGACACTAGTGATGATGATGAGGATGATGTTAAGACACCTAAAGGAATATGTCTT 684
|||| |||||| ||||||||| |||| |||||| ||||||||
Sbjct 629 AACAAAGACAC------------------CGATGTTAAGCCACCAAAAGGAGTATGTCTT 670
Query 685 GAGAAGATAGGAACTGGTTCTTACCTT-AACATGGTCGCTCATCCTGATGGTTCGAACCG 743
|||||||||||||| || ||||| ||| |||||||| ||||||||||||||||| |||||
Sbjct 671 GAGAAGATAGGAACCGGATCTTA-CTTAAACATGGTGGCTCATCCTGATGGTTCTAACCG 729
Query 744 GGCCTTTTTCTCTAACCAACCTGGTAAGATTTGGTTAGGTACAATACCGGATCAAGACTC 803
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 730 GGCCTTTTTCTCTAACCAACCTGGTAAGATTTGGTTAGGAACAATACCGGATCAAGACTC 789
Query 804 AGGTAAACCGATGGAAATCGATGAATCAACTCCTTTTGTTGATATTACCGATCAAGTTAG 863
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 790 AGGTGAACCGATGGAAATCGATGAATCGACTCCTTTTGTTGATATTACCGATCAAGTCAG 849
Query 864 TTTCGATACGCAGTTTGGTATGATGGGAATGGCGTTTCATCCTAAGTTCGCAGAGAACGG 923
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 850 TTTCGATACGCAGTTTGGTATGATGGGAATGGCGTTTCATCCCAAATTCGCAGAGAACGG 909
Query 924 GCGGTTTTTCGCGTCTTTTAACTGCGATAAAGTCAAATCTCCTGGATGCTCTGGTCGTTG 983
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 910 GCGGTTTTTCGCGTCTTTTAACTGCGATAAAGTCAAATCTCCTGGATGTTCTGGTCGTTG 969
Query 984 TGCTTGCAATTCTGATGTTAACTGTGATCCTTCGAAGCTTCCTAAAGATGATGGCACGAC 1043
|||||||||||||||||| || ||||||||||| |||||||||||||| |||||| || |
Sbjct 970 TGCTTGCAATTCTGATGTAAATTGTGATCCTTCTAAGCTTCCTAAAGACGATGGCGCG-C 1028
Query 1044 -GCCTTGTCGTTATCAGACCGTTGTGTCCGAGTATACCGCAAACGGTACTTCCTCGAGCC 1102
|||||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||
Sbjct 1029 ATCCTTGTCGTTATCAGACCGTCGTGGCTGAGTATACCGCGAACGGTACTTCCTCGAGCC 1088
Query 1103 CTTCAACGGCAAAGATTGGTAAAGCATCTGAAGTGAGGAGGATTTTCACTATGGGACTTC 1162
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1089 CTTCAACGGCAAAGATTGGTAAAGCCTCTGAAGTGAGGAGGATTTTCACTTTGGGACTTC 1148
Query 1163 CGTATTCTTCATCTCACGGTGGTCAGATTCTCTTTGGACCTGACGGGTATTTGTATCTCA 1222
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1149 CGTATTCGTCATCTCACGGTGGTCAGATTCTCTTTGGACCTGATGGGTATTTGTATCTCA 1208
Query 1223 TGACTGGTGACGGAGGAGGAGTTTCAGATACTCACAACTTTGCACAGAACAAGAAGTCGT 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TGACTGGTGACGGAGGAGGAGTTTCAGATACTCACAACTTTGCACAGAACAAGAAGTCGT 1268
Query 1283 TGCTTGGCAAAATCTTGAGGCTTGATGTTGATGTTATGCCAAGCGTATCTGAAATCTCTA 1342
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 TACTTGGAAAAATCTTGAGGCTTGATGTTGATGTTATGCCAAGCGTATCTGAAATCTCTA 1328
Query 1343 AGCTTGGTTTATGGGGAAACTACTCTATACCAAAAAACAATCCTTTCCAAGGAAATGAAA 1402
||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 1329 AGCTTGGTTTATGGGGAAACTACTCCATCCCAAAGAACAATCCTTTCCAAGGCAATGAAA 1388
Query 1403 ATGAGCAGCCTGAGATTTGGGCTTTAGGGCTACGAAATCCATGGCGCTGCAGCTTCGATT 1462
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1389 ATGAGCAGCCTGAGATTTGGGCTTTAGGTCTAAGAAATCCATGGCGCTGCAGCTTCGATT 1448
Query 1463 CCGAAAGACCAGATTACTTCTTGTGCGCAGATGTCGGAAAGGATACATATGAAGAAGTTG 1522
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1449 CCGAAAGACCAGATTACTTCTTGTGCGCCGATGTTGGAAAGGATACATATGAAGAAGTTG 1508
Query 1523 ATATCATAACAATGGGTGGAAACTATGGCTGGAGAACTTACGAAGGACCATATGTTTTCT 1582
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1509 ATATCATAACAAAGGGTGGAAACTATGGCTGGAGAACTTATGAAGGACCTTATGTTTTCT 1568
Query 1583 CACCGTTATCGCCTTTTGGAGAAAATGTTTCCTCGGATTCAAACCTGACATTCCCCATTC 1642
| || ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 1569 CCCCATTATCGCCTTTTGGAGAAAATGTTTCCGCGGATTCAAACCTTACATTCCCAATTC 1628
Query 1643 TCGGTTACAACCACTCTGAAGTGAACAAACATGAAGGATCTGCTTCCATCATTGGAGGTT 1702
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1629 TCGGTTACAACCACTCTGAAGTGAACAAACATGAAGGATCTGCTTCCATTATTGGAGGTT 1688
Query 1703 ACTTTTATCGATCCAACACTGATCCTTGCTCTTATGGAACGTACTTGTATGCAGATCTTT 1762
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 ACTTCTATCGATCCAACACTGATCCTTGCTCTTATGGAACGTACTTGTATGCAGATCTTT 1748
Query 1763 ATGCAAACGCAATGTGGGCAGCGATCGAATCACCAGAAGATAGTGGAAACTTCACGGACT 1822
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct 1749 ATGCAAACGCAATGTGGGCAGCGATTGAATCACCAAAAGATAGTGGAAACTTCACAGACT 1808
Query 1823 CTCTAATACCGTTTAGTTGCAGCAAGGATTCACCGATGAAGTGTACCGCAGCTCCAGGAG 1882
||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||
Sbjct 1809 CTCTAATACCGTTCAGTTGCAGTAAGGATTCGCCGATTAAGTGTACCGCGGCTCCAGGAG 1868
Query 1883 GAGCTAGCTCAGGACCTGCTCTTGGTTACATTTACTCATTTGGACAAGACAATAACAAGG 1942
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1869 GAGCTAGCTCAGGACCTGCTCTTGGTTACATCTACTCTTTTGGACAAGACAATAACAAGG 1928
Query 1943 ACATACATTTACTCACGAGCTCTGGTGTGTATCGAATTGTTCGTCCTAGTCGCTGTAACT 2002
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1929 ACATACATTTGCTCACGAGCTCTGGTGTGTATCGAGTTGTTCGTCCTAGTCGTTGTAACT 1988
Query 2003 TAGCTTGCTCCAAGGAAAACACCACCGCTTCTGCCGGAAAACAGAACCCTGCTGGTTCTG 2062
||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 1989 TAGCTTGCTCCAAAGAAAACACTACCGCTTCTACCGGAAAACAGAACCCTGCTGGTGCTG 2048
Query 2063 CTCCTCCTCAGCCTTTACCTTCTTCTGCAAGAAAGCTCTGTTTCTCTGTGTTTTTGTTAT 2122
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2049 CTCCTCCTCGGCCTTTACCTTCTTCTGCAAGAAAGCTCTGTTTCTCTTTGTTTTTGTTAG 2108
Query 2123 TGTCGTTGTTGATGATGTTTTTAACG-TTGTTAGATTAGAATGATGATTGTTTCAGACTC 2181
||||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2109 TGTCGTTGTTGTTTATGTTTTTAACGGTT-TTAGATTAGAATGATGATTGTTTCAGACTC 2167
Query 2182 TGTTTTGTAACAGTTCTTATGGATGTTATTCAAAAACTATTTTGTGATTGCTTATATTAG 2241
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2168 TGTTTTGTAACATTTCTTATGGATATTATTCAAAAACTATTTTGTGATTGCTTATATTAG 2227
Query 2242 ACGAACTCATATGTAATAAACCATTAAGTTTGAGTTCTTTTGT 2284
||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2228 ACGAAATCATATATAATAAACCATTAAGTTTGAGTTCTTTTGT 2270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86007773210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5