BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62640.3
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496447 jgi|Araly1|496447|fgenesh2_kg.8__2263__AT5G62640.2 2248 0.0
Ahg887379 jgi|Araly1|887379|Al_scaffold_0584_2 300 3e-80
Ahg323394 jgi|Araly1|323394|fgenesh1_pm.C_scaffold_5000938 211 1e-53
> Ahg496447 jgi|Araly1|496447|fgenesh2_kg.8__2263__AT5G62640.2
Length=1723
Score = 2248 bits (1217), Expect = 0.0
Identities = 1421/1514 (94%), Gaps = 35/1514 (2%)
Strand=Plus/Plus
Query 346 TAACAAGAAAGAGAGGCAAAAGG-TACGAGAGGTTGGAATTTTGAAGAAGGATCCTGAAC 404
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 229 TAACAAGAAAGAGAGGCAAAAGGTTA-GAGAGGTTGGAATTTTGAAGAAGGATCCTGAAC 287
Query 405 AGATCAAGGATCAGATCAGGAAGCTTGATATGTCAAAGGCGGAAGGTGCTTTGGACAAAG 464
| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 288 AAATCAAGGAACAGATCAGGAAACTTGATATGTCTAAGGCGGAAGGTGCTTTGGACAAAG 347
Query 465 CAAGAAAACATAAAAAGAGACAGCTTGAAGATACTCTTAAAA---TGGT----------- 510
||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 348 CAAGAAAACATAAAAAGAGACAGCTTGAAGATACTCTAAAAATGGTGGTGAAGAAGAGAA 407
Query 511 -GGAATATGATGAGAAAAAGAAGGAGCAAGGAGAGGCAACAACCTCTGTTATGTTCAGTC 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AGGAATATGATGAGAAAAAGAAGGAGCAAGGAGAGGCAACAACCTCTGTTATGTTCAGTC 467
Query 570 ATCTACCCCCTCAGCGAAGATTAACTGGCGAAGAGGACTTAAAACCAGAGGACTCTGTTT 629
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 468 ATCTACCCCCTCAACGAAGATTAACTGGCGAAGAGGACTTAAAACCAGAGGACTCTGTGT 527
Query 630 ATTATCACCCTACTTTGAACCCAACTGGTGCACCACCCCCGGGAAAGCCACCAATGTATA 689
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 528 ATTATCACCCTACTTTGAACCCAACTGGTGCCCCACCCCCGGGAAAGCCACCAATGTATA 587
Query 690 ATTCATCCATAGGACTTGCTATCTCCTCAGATGGTGCTTCATCTAGTAGTGCTGCATTGT 749
| | | ||| | | | | ||||||||||||||||||| ||||||||||||
Sbjct 588 A-T--T-CAT----C--G--A-----T-AGATGGTGCTTCATCTAGTGGTGCTGCATTGT 629
Query 750 CTTCTATTACCGAGTCAGAAGATTCCGTCTTAGTTAATCCTCCTCCACTTCCTCCTCTAC 809
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 630 CTTCTATTACCGAGTCAGAAGATTCCGCCTTAGTTACCCCTCCTCCACTTCCTCCTCTAC 689
Query 810 CGGATGGGGATAATGCTTTATCTGCTTCTTTGCCACTTCCACCTCTACCTCCTTTGCCAC 869
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 690 CGGATGGGAATAATGCTTTATCTGCTTCTTTGCCACTTCCACCTCCACCTCCTTTGCCAC 749
Query 870 CAACTACAGGCCTTACTTTGCCACATTCACCATTTCCACCACCACCTCCGGGGCCACCAC 929
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 750 CAACTACAGGCCTTACTTTGCCACATTCATCATTTCCACCACCACCTCCGGGGCCACCAC 809
Query 930 CAAAAGAGCAGGATTTTGTTCGTCCTCCTCTTCCCCCACCTCCTCAACTTCCTCAATCTT 989
|||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 810 CAAAAGAGCAGGATTTGGTTCGTCCTCCTCTTCCTCCACCTCCTCCACTTCCTCAATCTT 869
Query 990 CCCAACCACCTCCTCCTGGTCTAAGTGGAAGTCAAGGCGATGGTAGATTCCCGGAATCAT 1049
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 870 CCCAACCACCTCCTCCTGGTCTAAGTGGAAGTGAAGGCGATGGTAGATTCCCGGAATCAT 929
Query 1050 CAGATTTTACCTTCGACAATCGCATGAATGCTAATATAACTTCCGTCCCTCTTCTCCCAC 1109
||||||| ||||| |||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 930 CAGATTTCACCTTTGACAATCGCAAGAACGCTAATATAACTTCCGTCCCTCCTCTCCCAC 989
Query 1110 CACCTGGCATTCCAAGCAATGAATCTGAGAGTCGTCCTGCAGAATCTAACGCCAGTAGTT 1169
|||| ||| |||||| ||| |||||||||||| |||| ||||||||||||| |||||||
Sbjct 990 CACCCGGCCTTCCAAACAACGAATCTGAGAGTGGTCCAGCAGAATCTAACGGGAGTAGTT 1049
Query 1170 TTCAAAACGCTAACCTCTCAAAGATGGTTGCACCACCACCACCAGCACCTTTACATCAGC 1229
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1050 TTCAAAACGCTAACCTCTCTAAGATGGTTGCACCACCACCACCACCACCTTTACATCAGC 1109
Query 1230 AACATCAATCAACATTTGCAGGAGCTGCTGCTTCACTGACTAATTTTCAACCTGATGTTC 1289
| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1110 AGCATCAATCAACATTTGCAGGAGCTGCTGCTCCACTGTCTAATTTTCAACCTGATGTTC 1169
Query 1290 ATCCTCCTCCAGGAATGTTGCGTTTTCCACCTCCACCGCCTCCACTCGATATGCATCCTC 1349
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 ATCCGCCTCCAGGAATGTTGCGTTTTCCACCTCCACCGCCTCCACTCGATATGCATCCTC 1229
Query 1350 CTCATCCTGGAATGTTTGTTGGTCATCTAATCCCAAGACCACCGTATGGCCCACCGCCTG 1409
||||||| |||||||| | ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1230 CTCATCCAGGAATGTTCGGTGGTCATCTGATCCCGAGACCACCGTATGGCCCACCGCCTG 1289
Query 1410 GACCGCCTCCTATGATGAGACCGCCACTTCCACCAGGACCACCACCGTCTAGTTTTCAAG 1469
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1290 GACCGCCTCCTATGATGAGACCGCCGCTTCCACCAGGACCACCACCGTCTAGTTTTCAAG 1349
Query 1470 ACGGTCAAGCAATGATCAGACCATATGTACCAAACAAACCATCTTTTGTAAAATCCGCTG 1529
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 ATGGTCAAGCAATGATCAGACCATATGTACCAAACAAACCATCTTTTGTAAAATCCGCTG 1409
Query 1530 CTCCTACTGTTGTCAGGAGACCACTCGCTCAACACACACCTGAGCTTACATCCATGGTCC 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 CTCCTACTGTTGTCAGGAGACCACTCGCTCAACACACACCTGAGCTTACATCCATGGTCC 1469
Query 1590 CTGCGTCGGTTCGAGTCAGAAGAGAATCAGCAACTGTGACGAAACCAAAGCCAAAGACTT 1649
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1470 CTGCGTCGGTTCGAGTCAAAAGAGAATCAGCAACTGTGACCAAACCAAAGCCAAAGACTT 1529
Query 1650 CGATAGCCTCGAGCTTGAGTTTTACACCAAGAGCTATGGCTTCTGCTGCAACGGTGAAGG 1709
|||||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1530 CGATAGCCACAAGCTTGAGTTTTACACCAAGGGCTATGGCTTCTGCTGCATCGGTGAAGG 1589
Query 1710 TAGAGCCAGCCAAGACATCTGCAGCTTCAAAGCCACAGAGCATTGATGATTCGTACACAG 1769
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 TAGAGTCAGCCAAGACATCTGCAGCTTCAAAGCCACAGAGCATTGATGATTCGTACACAG 1649
Query 1770 CTTTCTTAGAGGACATGAAAGCTCTTGGCGCACTTGATGGATAAACTTTAGAGTTGTAGT 1829
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||
Sbjct 1650 CTTTCTTAGAGGACATGAAAGCTCTTGGAGCACTTGATGGATAAACGTTAGACTTATAGT 1709
Query 1830 CTTCAAACAAAGTT 1843
||||||| |||||
Sbjct 1710 ATTCAAACTAAGTT 1723
Score = 235 bits (127), Expect = 9e-61
Identities = 136/140 (97%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 133 ATCTGTGAGCAAATCCTAAATCGGTGGGAGGGAGATTGAAGAACGGTAAA-CGGAAAATA 191
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 91 ATCTGTGAACAAATCCTAAATCGGTGGGAGGGAGATTGAAGAACGGTAAATCGG-AAATA 149
Query 192 TGAAGACGACGAAGGGAGGCAAAGTGATGAACCCTACTGATGCTTATCGCAAGCAGATTC 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 TGAAGACGACGAAGGGAGGCAAAGTGATGAACCCTACTGATGCTTATCGCAAGCAGATTC 209
Query 252 GCAAGAGAGAAATTAAGCGT 271
||||||| ||||||||||||
Sbjct 210 GCAAGAGGGAAATTAAGCGT 229
> Ahg887379 jgi|Araly1|887379|Al_scaffold_0584_2
Length=348
Score = 300 bits (162), Expect = 3e-80
Identities = 214/236 (91%), Gaps = 15/236 (6%)
Strand=Plus/Plus
Query 347 AACAAGAAAGAGAGGCAAAAGGTACGAGAGGTTGGAATTTTGAAGAAGGATCCTGAACAG 406
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 109 AACAAGAAAGAGAGGCAAAAGGTAAGAGAGGTTGGAATTTTGAAGAAGGATCCTGAACAA 168
Query 407 ATCAAGGATCAGATCAGGAAGCTTGATATGTCAAAGGCGGAAGGTGCTTTGGACAAAGCA 466
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 169 ATCAAGGAACAGATCAGGAAACTTGATATGTCTAAGGCGGAAGGTGCTTTGGACAAAGCA 228
Query 467 AGAAAACATAAAAAGAGACAGCTTGAAGATACTCTTAAAATGGTGG--AA---------- 514
||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 229 AGAAAACATAAAAAGAGACAGCTTGAAGATACTCTAAAAATGGTGGTGAAGAAGAGAAAG 288
Query 515 ---TATGATGAGAAAAAGAAGGAGCAAGGAGAGGCAACAACCTCTGTTATGTTCAG 567
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 289 GAATATGATGAGAAAAAGAAGGAGCAAGGTGAGGCAACAACCTCTGTTATGTTCAG 344
Score = 139 bits (75), Expect = 7e-32
Identities = 80/82 (98%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 191 ATGAAGACGACGAAGGGAGGCAAAGTGATGAACCCTACTGATGCTTATCGCAAGCAGATT 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGACGACGAAGGGAGGCAAAGTGATGAACCCTACTGATGCTTATCGCAAGCAGATT 60
Query 251 -CGCAAGAGAGAAATTAAGCGT 271
|||||||||||||| ||||||
Sbjct 61 TCGCAAGAGAGAAATAAAGCGT 82
> Ahg323394 jgi|Araly1|323394|fgenesh1_pm.C_scaffold_5000938
Length=1458
Score = 211 bits (114), Expect = 1e-53
Identities = 341/444 (77%), Gaps = 42/444 (9%)
Strand=Plus/Plus
Query 347 AACAAGAAAGAGAGGCAA-AAGGTACGAGAGGTTGGAATTTTGAAGAAGGATCCTGAACA 405
|||||| ||||| | || ||| || ||||||| || ||||| || ||||||||||||||
Sbjct 70 AACAAGCTAGAGA-GAAAGAAGATAAGAGAGGTCGGGATTTTAAACAAGGATCCTGAACA 128
Query 406 GATCAAGGATCAGATCAGGAAGCTTGATATGTCAAAGGCGGAAGGTGCTTTGGACAAAGC 465
|| ||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 129 AATTAAGGAACAGATCAGGAAACTAGATATCTCAAAGGCTGAAGGTGCTTTGGACAAAGC 188
Query 466 AAGAAAACATAAAAAGAGACAGCTTGAAGATACTCTTAAA-ATGGTGGAATATGATGAGA 524
||||||||||||||||||||| |||||||||||| || | ||| | ||| | |||
Sbjct 189 AAGAAAACATAAAAAGAGACAACTTGAAGATACT-TTGCAGATG-TCGAA---G--GAGC 241
Query 525 AAAAGAAGGAGCAAGGAGAGGCAACAACCTCTGTTATGTTCAGTCATCTACCCCCTCAGC 584
| | || | | | | | |||||||||||||||||||| || |||||||| || |
Sbjct 242 A---G--GG-G---G-A-AC-CTACAACCTCTGTTATGTTCAGCCACCTACCCCCACAAC 289
Query 585 GAAGAT-TAACT-GGCG-A--A--GA-----GGACTTAAAACCAGAGGACTCTGTTTATT 632
||||| | | || | | | || ||| |||| ||||||||||||||||||||
Sbjct 290 GAAGACCTGGCGAGGAGGATGAAAGATCAAAGGATTTAACACCAGAGGACTCTGTTTATT 349
Query 633 ATCACCCTACTTTGAACCCAACTGGTGCACCACCCCCGGGAAAGCCACCAATGTATAA-T 691
||||||| || |||||||| |||||| | |||||||| ||||||||||| || | | |
Sbjct 350 ATCACCCCACCTTGAACCCGACTGGTTCGCCACCCCCTGGAAAGCCACCCATATTTGGCT 409
Query 692 -TCATC-CATAGGACTTGCTATCTCCTCAGATGGTGCTTCATCTAGTAGTGCTGCATTGT 749
| || || |||| || ||| ||| |||||| ||||| |||||| ||| ||||| |
Sbjct 410 AT-ATTGCA--GGACCTGGAATCCCCTTAGATGGCGCTTCCTCTAGTGGTGTTGCATCAT 466
Query 750 CTTCTA-TTACCGAGTCAGAAGAT 772
|||| | ||| |||| ||||||
Sbjct 467 CTTCAAATTAT-GAGTTGGAAGAT 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73818894810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5