BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62670.1
Length=3271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951055 jgi|Araly1|951055|scaffold_802942.1 4902 0.0
Ahg480836 jgi|Araly1|480836|fgenesh2_kg.3__3537__AT2G18960.1 1016 0.0
Ahg897637 jgi|Araly1|897637|Al_scaffold_0005_1603 484 1e-135
> Ahg951055 jgi|Araly1|951055|scaffold_802942.1
Length=2914
Score = 4902 bits (2654), Expect = 0.0
Identities = 2825/2910 (97%), Gaps = 2/2910 (0%)
Strand=Plus/Plus
Query 131 AGGAGGTAGCAGGAGAATATGGGGGACAAGGAAGAAGTCCTTGAGGCTGTTTTGAAAGAA 190
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 6 AGGAGGTAGCAGGAGAATATGGGGGACAAGGAAGAAGTCCTTGAGGCGGTTTTGAAAGAA 65
Query 191 ACTGTGGATCTGGAGAATGTACCTATTGAAGAAGTTTTTGAGAGTCTGAGATGTAGCAGA 250
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 66 ACTGTGGATCTGGAGAATGTGCCTATTGAAGAAGTTTTTGAGAGTCTGAGATGTAGCAGA 125
Query 251 GAAGGTCTCACTACAGAAGCTGCTGATGAAAGGCTGGCTCTTTTTGGGCATAACAAGCTC 310
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 126 GAAGGTCTCACTACAGAAGCTGCTGATGAAAGGCTTGCTCTTTTTGGGCATAACAAGCTC 185
Query 311 GAAGAGAAGAAGGAAAGCAAATTCCTGAAATTTCTTGGTTTCATGTGGAACCCTCTTTCT 370
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 186 GAAGAGAAGAAGGAAAGCAAATTCCTGAAATTTCTTGGTTTCATGTGGAATCCTCTTTCT 245
Query 371 TGGGTTATGGAAGCTGCTGCTATCATGGCTATTGCTCTTGCTAATGGAGGAGGGAAGCCA 430
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 246 TGGGTTATGGAAGCTGCTGCTATCATGGCTATTGTTCTTGCTAACGGAGGAGGGAAGCCT 305
Query 431 CCTGATTGGCAAGACTTTGTTGGTATTATTACTCTGCTTGTGATTAACTCCACTATCAGT 490
||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct 306 CCTGATTGGCAAGACTTTGTTGGTATTATTACTCTTCTTGTGATCAATTCCACCATCAGT 365
Query 491 TTCATAGAGGAGAACAATGCCGGGAATGCTGCTGCTGCACTCATGGCACGTCTTGCCCCA 550
||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 366 TTCATAGAGGAGAACAACGCAGGGAATGCTGCTGCTGCTCTTATGGCACGTCTTGCCCCC 425
Query 551 AAAGCAAAGGTTCTTCGAGATGGAAGATGGGGTGAGCAGGATGCTGCAATTCTTGTTCCG 610
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 426 AAAGCAAAGGTTCTTCGAGATGGAAGGTGGGGTGAGCAGGATGCTGCAATTCTTGTTCCT 485
Query 611 GGTGATATAATCAGCATAAAGCTCGGGGATATTGTTCCAGCTGATGCTCGCCTTCTCGAG 670
||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 486 GGTGACATAGTCAGCATCAAGCTTGGGGATATTGTTCCAGCTGATGCTCGCCTTCTCGAG 545
Query 671 GGTGATCCCCTTAAAATCGATCAGTCTTCTCTTACCGGTGAATCTCTCCCAGTAACCAAA 730
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 546 GGTGATCCCCTTAAGATCGATCAGTCTTCTCTTACTGGTGAATCTCTCCCAGTAACCAAA 605
Query 731 GGTCCAGGGGATGGTGTGTATTCTGGCTCCACTTGCAAACAGGGAGAGCTTGAAGCAGTT 790
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 606 GGTCCAGGGGATGGTGTGTATTCCGGCTCCACTTGCAAACAGGGAGAGCTTGAAGCAGTT 665
Query 791 GTGATTGCAACGGGAGTCCATACCTTCTTTGGAAAGGCCGCACATCTTGTCGATACGACC 850
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 666 GTGATCGCAACGGGAGTCCATACCTTCTTTGGAAAGGCCGCACATCTTGTTGATACGACC 725
Query 851 AACCACGTTGGCCATTTTCAACAGGTGTTAACTGCCATTGGGAACTTT-TGCATCTGCTC 909
||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 726 AACCAAGTTGGCCACTTTCAACAGGTGTTAACTGCCATTGGGAA-TTTCTGCATCTGCTC 784
Query 910 TATCGCAGTGGGGATGATAATTGAGATTGTCGTTATGTATCCCATTCAACACCGTGCATA 969
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 785 TATTGCAGTGGGGATGATAATTGAGATTGTCGTTATGTATCCCATTCAACACCGAGCATA 844
Query 970 TCGTCCTGGAATTGATAACCTTCTTGTGCTTCTCATTGGCGGTATCCCAATTGCCATGCC 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 845 TCGTCCTGGAATTGATAACCTTCTTGTGCTTCTCATTGGCGGTATCCCAATTGCTATGCC 904
Query 1030 TACAGTTCTCTCTGTGACCATGGCCATTGGCTCGCATAGGTTATCTCAGCAGGGAGCAAT 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TACAGTTCTCTCTGTGACCATGGCCATTGGCTCGCATAGGTTATCTCAGCAGGGAGCAAT 964
Query 1090 AACCAAGAGGATGACAGCGATTGAGGAAATGGCTGGCATGGATGTGCTTTGCAGCGACAA 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AACCAAGAGGATGACAGCGATTGAGGAAATGGCTGGCATGGATGTGCTTTGCAGCGACAA 1024
Query 1150 GACCGGAACTTTAACATTGAATAAACTTACTGTTGACAAAAATCTTATCGAGGTTTTCAC 1209
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1025 AACCGGAACTTTAACATTGAATAAACTTACTGTTGACAAAAATCTTATTGAGGTTTTCAC 1084
Query 1210 GAAAGGAGTGGATGCGGATACAGTAGTTCTAATGGCAGCTCAAGCCTCTAGACTGGAAAA 1269
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1085 GAAAGGAGTGGATGCAGATACAGTAGTTCTGATGGCAGCTCAAGCCTCTAGACTGGAAAA 1144
Query 1270 CCAAGATGCCATTGATGCTGCTATAGTTGGGATGCTTGCTGACCCTAAAGAGGCACGGGC 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1145 CCAAGATGCCATTGATGCTGCTATAGTTGGGATGCTTGCTGACCCTAAAGAGGCACGAGC 1204
Query 1330 TGGTGTTCGAGAGGTTCACTTTCTTCCATTCAATCCCACTGACAAGAGGACGGCTCTTAC 1389
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1205 TGGTGTTCGAGAGGTTCACTTTCTTCCATTCAATCCCACTGATAAGAGGACGGCTCTTAC 1264
Query 1390 ATATATTGACAGTGATGGTAAAATGCATAGGGTCAGCAAAGGTGCACCTGAGCAAATCCT 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 ATATATTGACAGTGATGGTAAAATGCATAGGGTCAGCAAAGGTGCACCTGAGCAAATCCT 1324
Query 1450 AAATCTTGCACACAATAGAGCAGAGATTGAGCGGAGAGTACATGCTGTAATAGACAAGTT 1509
||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1325 AAATCTTGCGCACAATAAAGCAGAGATTGAGCGGAGAGTTCATGCTGTAATAGACAAGTT 1384
Query 1510 CGCTGAACGGGGTTTGCGATCTCTTGCCGTGGCATACCAGGAAGTTCCGGAAGGGACGAA 1569
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 CGCTGAACGGGGTTTACGATCTCTTGCCGTGGCATACCAGGAAGTTCCGGAAGGGACGAA 1444
Query 1570 AGAAAGTGCTGGAGGCCCTTGGCAATTTATGGGTCTCATGCCTCTTTTTGACCCACCTAG 1629
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1445 GGAAAGTGCTGGAGGCCCTTGGCAATTTATGGGTCTGATGCCTCTTTTTGACCCACCTAG 1504
Query 1630 GCATGACAGTGCCGAGACAATTAGAAGGGCTTTAAATCTTGGGGTGAATGTTAAAATGAT 1689
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1505 GCATGACAGTGCCGAGACAATTAGAAGGGCTTTAAATCTTGGGGTGAATGTCAAAATGAT 1564
Query 1690 CACAGGGGATCAGTTGGCTATAGGAAAAGAGACTGGCCGCCGTTTAGGAATGGGAACCAA 1749
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1565 CACAGGGGATCAGTTGGCAATAGGAAAAGAGACTGGACGCCGTTTAGGGATGGGAACCAA 1624
Query 1750 CATGTACCCCTCATCTGCTTTGCTTGGACAGCACAAGGATGAGTCTATTGGTGCCTTACC 1809
||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1625 CATGTACCCTTCATCTGCTTTACTCGGACAGCACAAGGATGAGTCTATAGGTGCCTTACC 1684
Query 1810 CATCGATGATCTTATAGAAAAGGCCGACGGCTTTGCTGGCGTTTTTCCTGAGCATAAATA 1869
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1685 CATCGATGATCTCATAGAAAAGGCCGATGGCTTTGCTGGCGTTTTTCCTGAGCATAAATA 1744
Query 1870 TGAGATAGTTAAGCGACTACAAGCGAGGAAGCATATCTGTGGAATGACAGGTGATGGAGT 1929
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1745 TGAGATAGTTAAGCGACTACAAGCGAGGAAGCATATTTGTGGAATGACAGGTGATGGAGT 1804
Query 1930 AAATGATGCGCCTGCTCTTAAAAAGGCTGATATTGGCATTGCAGTTGCTGATGCAACTGA 1989
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1805 AAATGATGCGCCTGCTCTTAAAAAGGCTGACATTGGCATTGCAGTTGCTGATGCAACTGA 1864
Query 1990 TGCAGCACGTAGTGCTTCAGATATCGTTCTTACTGAACCTGGTCTTAGTGTTATCATCAG 2049
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1865 TGCAGCACGTAGTGCTTCAGACATCGTTCTTACTGAACCTGGTCTTAGTGTTATCATCAG 1924
Query 2050 CGCTGTCTTAACCAGCCGTGCTATCTTCCAGAGAATGAAAAATTATACAATCTATGCGGT 2109
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CGCTGTCTTGACCAGTCGTGCTATCTTCCAGAGAATGAAAAATTATACAATCTATGCGGT 1984
Query 2110 TTCCATCACTATCCGTATTGTTCTTGGCTTCATGCTGCTAGCTCTTATATGGAAGTTTGA 2169
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1985 TTCCATCACTATCCGTATTGTCCTTGGCTTCATGCTGCTGGCTCTTATATGGAAGTTTGA 2044
Query 2170 CTTTCCACCCTTCATGGTTCTTATCATTGCCATTCTGAATGATGGCACAATTATGACAAT 2229
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2045 CTTTCCACCCTTCATGGTTCTTATCATCGCCATCCTGAATGATGGCACAATTATGACAAT 2104
Query 2230 ATCAAAAGACAGAGTGAAACCTTCCCCTCTTCCAGATAGCTGGAAACTCTCAGAGATTTT 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2105 ATCAAAAGACAGAGTGAAACCTTCCCCTCTTCCAGATAGCTGGAAACTCTCAGAGATTTT 2164
Query 2290 TGCAACTGGCGTTGTGTTTGGGAGCTACATGGCGATGATGACAGTTATATTTTTCTGGGC 2349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2165 TGCAACTGGCGTTGTGTTTGGGAGCTACATGGCGATGATGACAGTTATATTTTTCTGGGC 2224
Query 2350 TGCATATAAAACCGACTTCTTCCCGCGAACATTTGGAGTTTCAACCCTGGAGAAAACAGC 2409
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 2225 TGCATATAAAACCGACTTCTTCCCGCGTACTTTTGGAGTTTCAACCCTTGAGAAAACAGC 2284
Query 2410 ACATGATGATTTCCGGAAGCTTGCCTCGGCAATATACCTGCAAGTCAGCATCATAAGTCA 2469
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2285 ACATGATGATTTCCGGAAGCTTGCCTCAGCAATATACCTGCAAGTCAGCATCATAAGTCA 2344
Query 2470 GGCGCTTATCTTTGTGACCCGATCACGGAGTTGGTCTTATGTAGAACGTCCTGGGATGTT 2529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2345 GGCGCTTATCTTTGTGACCCGATCACGGAGTTGGTCTTATGTAGAACGTCCTGGGATGTG 2404
Query 2530 GCTTGTGGTAGCCTTTATCCTTGCACAATTGGTGGCTACTCTAATTGCAGTCTATGCGAA 2589
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2405 GCTTGTGATAGCCTTTATCCTCGCACAATTGGTGGCTACTCTAATTGCAGTGTATGCGAA 2464
Query 2590 TTGGAGCTTTGCTGCAATAGAAGGGATCGGGTGGGGATGGGCCGGGGTCATCTGGCTTTA 2649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2465 TTGGAGCTTTGCTGCAATAGAAGGGATCGGGTGGGGATGGGCCGGGGTCATCTGGCTTTA 2524
Query 2650 CAATATCGTATTCTATATTCCTCTTGATATCATCAAGTTCTTGATTCGTTATGCCCTTAG 2709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2525 CAATATCGTATTCTATATTCCTCTTGATATCATCAAGTTCTTGATTCGTTATGCCCTTAG 2584
Query 2710 CGGAAGAGCCTGGGATCTTGTTATCGAACAAAGGGTTGCATTCACGAGGCAGAAGGATTT 2769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2585 CGGAAGAGCCTGGGATCTTGTTATCGAACAAAGGGTTGCATTCACGAGGCAGAAGGATTT 2644
Query 2770 CGGGAAAGAACAAAGGGAGCTACAATGGGCACATGCACAGAGAACCCTGCACGGTCTGCA 2829
|||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||
Sbjct 2645 CGGGAAAGAACAAAGGGAGCTACAATGGGCGCACGCACAGAGAACTCTGCACGGCCTGCA 2704
Query 2830 AGCACCAGATGCTAAGATGTTCCCGGAGCGAACCCATTTCAACGAGCTTTCCCAAATGGC 2889
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2705 AGCACCAGATGCTAAGATGTTCCCAGAGCGAACCCATTTCAACGAGCTTTCCCAAATGGC 2764
Query 2890 CGAAGAAGCTAAGAGAAGAGCCGAGATCGCCAGGTTGCGGGAGCTTCACACACTTAAGGG 2949
|||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 2765 TGAAGAAGCTAAGAGAAGAGCTGAAATCGCCAGGTTGCGGGAGCTTCACACACTCAAGGG 2824
Query 2950 TCATGTTGAATCTGTTGTCAGACTAAAAGGTCTCGACATTGAAACCATTCAACAAGCTTA 3009
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2825 TCATGTTGAATCTGTTGTGAGACTAAAGGGTCTCGACATTGAAACCATTCAACAAGCTTA 2884
Query 3010 CACCGTCTGAGAGAAGCATAGAGAGAGCCC 3039
||||||||||||||||||||| ||||||||
Sbjct 2885 CACCGTCTGAGAGAAGCATAGGGAGAGCCC 2914
> Ahg480836 jgi|Araly1|480836|fgenesh2_kg.3__3537__AT2G18960.1
Length=3377
Score = 1016 bits (550), Expect = 0.0
Identities = 2172/2923 (74%), Gaps = 239/2923 (8%)
Strand=Plus/Plus
Query 184 GAAAGAAACTGTGGATCTGGAGAATGTACCTATTGAAGAAGTTTTTGAGAGTCTGAGATG 243
||| || || || |||||||| || | || ||||| |||||||| ||||||| | |||
Sbjct 242 GAACGAGACCGTTGATCTGGAAAAAATTCCGATTGAGGAAGTTTTCCAGAGTCTAAAATG 301
Query 244 TAGC-AGAGAAGG-TCTCACTA--CA-GAAGCTGCTGATGAAAGGCTGGC-TCTTTTTGG 297
|| | || ||||| | | || | || |||| | || || ||| | | ||||||||
Sbjct 302 TA-CAAGGGAAGGAT-TGACGACGCAGGAAG--G-GGAAGAGAGGAT-TCAGCTTTTTGG 355
Query 298 GCATAACAAGCTCGAAGAGAAGAAGGAAAGCAAA-TTCCTGAAATTTCTTGGTTTCATGT 356
| |||||||||||||||||||||||||||||| ||| |||| ||||| || |||||||
Sbjct 356 CCCCAACAAGCTCGAAGAGAAGAAGGAAAGCAAAATTC-TGAAGTTTCTGGGGTTCATGT 414
Query 357 GGAACCCTCTTTCTTGGGTTATGGAAGCTGCTGCTATCATGGCTATTGCTCTTG-CTAAT 415
|||| || ||||| ||||| ||||||||||| ||||||||||| |||||| ||| |||||
Sbjct 415 GGAATCCGCTTTCATGGGTCATGGAAGCTGCAGCTATCATGGCCATTGCT-TTGGCTAAT 473
Query 416 GGAGGAGGGAAG-CCACCTGATTGGCAAGACTTTGTTGGTATTAT-TACTCTGCTTGTGA 473
|| | | || || || || ||||||||||| ||||| ||||| || | ||||||||| |
Sbjct 474 GGTG-ATGGTAGACCTCCGGATTGGCAAGATTTTGTGGGTATCATCTG-TCTGCTTGTTA 531
Query 474 TTAACTCCACTATCAGTTTCATAGAGGAGAACAATGCCGGGAATGCTGCTGCTGCACTCA 533
| |||||||| ||||||||||| || || ||||||||||| |||||||| ||||| || |
Sbjct 532 TCAACTCCACAATCAGTTTCATTGAAGAAAACAATGCCGGAAATGCTGCAGCTGCTCTAA 591
Query 534 TGGCACGTCTTGCCCC-AAAAGCAAAGGTTCTTCGAGATGGAAGATGGGGTGAGCAGGAT 592
|||| ||||||| || |||| ||| ||||||| | ||||||| |||| |||| || ||
Sbjct 592 TGGCTGGTCTTGCTCCTAAAACCAA-GGTTCTTAGGGATGGAAAATGGAGTGAACAAGAA 650
Query 593 GCTGCAATTCTTGTTCCGGGTGATATAATCAGCAT-AAAGCTCGGGGATATTGTTCCAGC 651
||||| || ||||| || |||||||| | ||||| ||| || || || ||| | |||||
Sbjct 651 GCTGCTATCCTTGTCCCAGGTGATATTGTTAGCATTAAA-CTTGGAGACATTATCCCAGC 709
Query 652 TGATGCTCGCCTTCTCGAGGGTGATCCCCTTAAAA-TCGATCAGTCTTCTCTTACCGGTG 710
||||| || ||||| || || ||||| ||||| | ||||||||| |||| || || |
Sbjct 710 CGATGCCCGTCTTCTTGAAGGAGATCCT-TTAAAGGTTGATCAGTCTGCTCTAACTGGAG 768
Query 711 AATCTCTCCCAGTAACCAAAGGTCCAGGGG-ATGGTGTGTAT-TCTGGCTCCACTTGCAA 768
| || || || |||||||| | || || | | || | | ||||| || ||||| ||
Sbjct 769 AGTCCCTTCCTGTAACCAA-GCACCCTGGTCAAGAAGTTT-TCTCTGGTTCAACTTGTAA 826
Query 769 ACAGGGAGAGCTTGAAGCAGTTGTGATTGCAACGGGAGTCCATACCTTCTTTGG-AAAGG 827
||| ||||| | ||||| ||||| || || || ||||| || |||||||| || ||||
Sbjct 827 ACAAGGAGAAATCGAAGCGGTTGTTATAGCCACAGGAGTTCACACCTTCTTCGGTAAAG- 885
Query 828 CCGCACATCTTGTCGATA-CGACCAACCACGTTGGCCATTTTCA-ACAGGTGTTA-ACTG 884
| || || ||||| || | | || ||||| ||||| || || || | || | ||| | |
Sbjct 886 CTGCTCACCTTGTGGACAGC-ACTAACCAAGTTGGGCACTTCCAGAAAGTTCTTACA-T- 942
Query 885 CCATTGGGAACTTTTGCATCTGCTCTATCGC-AGTGGGGAT-GATAATTGAGATTGTCGT 942
||||||| ||||| || ||||| ||||| || | ||| || | | ||||| || ||||
Sbjct 943 CCATTGGAAACTTCTGTATCTGTTCTATTGCTATTGGT-ATAG-TGATTGAAATAATCGT 1000
Query 943 TATGTATCCC-ATTCAACACCGTGCA-TATC-GTCCTGGAATTGATAACCTTCTTG-TGC 998
||||| ||| || |||| ||| | || | | ||||||||| || || |||| | |
Sbjct 1001 CATGTA-CCCTATCCAACGCCGAA-AGTA-CAGAGATGGAATTGACAATCT-CTTGGTCC 1056
Query 999 TTCTC-ATTGGCGGTATCCCAATTGCCATGCCTACAGTTCTC-TCTGTGACCATGGCCAT 1056
| || || || |||||||| ||||| ||||| || || || |||||||| ||||| ||
Sbjct 1057 T-CTTGATCGGTGGTATCCCCATTGCTATGCCCACGGT-CTTGTCTGTGACTATGGCTAT 1114
Query 1057 TGGCTCGCATAGGTTATCTCAGCAGGGAGCAATAACCAAGAGG-ATGACAGCGATTGAGG 1115
|| || || ||||| |||||||| || || || ||||| | | |||||||| ||||| |
Sbjct 1115 CGGGTCTCACAGGTTGTCTCAGCAAGGTGCCATCACCAA-ACGTATGACAGCCATTGAAG 1173
Query 1116 AAATGGCTGGCATGGATGTGCTTTGCAGCGACAAGACCGGAACTTTAACATTGAATAAAC 1175
||||||| || |||||||| || ||||| ||||| ||||| || |||| | ||||||
Sbjct 1174 AAATGGCGGGAATGGATGTCCTGTGCAGTGACAAAACCGGGACACTAACCCTCAATAAA- 1232
Query 1176 TT-ACTGTTGACAAAAATCTTA-TCGAGGTTTTCACGAAAGGA-GTGGATGCG-GATACA 1231
|| | ||| || ||||| ||| | ||||||||| | |||| ||||| | ||| ||
Sbjct 1233 TTGAGTGTGGATAAAAA-CTTGGTTGAGGTTTTCT-GCAAGGGTGTGGA-GAAAGAT-CA 1288
Query 1232 GTAGTTCTA--ATG-GCAGCTCAAGCCT-CTAGACTGGAAAACCAAGATGCCATTGATGC 1287
||||||| || |||||| | | || |||| |||| ||||| || || ||||||||
Sbjct 1289 --AGTTCTACTATTTGCAGCT-ATGGCTTCTAGGGTGGAGAACCAGGACGCTATTGATGC 1345
Query 1288 TGCTATAGTTGGGATGCTTGCTGACCCTAAAGAGGCACGGGCTGGTGTTC-GAGAGGTTC 1346
|| || ||||| ||||||||||| || |||||||| || ||||| | | | |||||||
Sbjct 1346 AGCCATGGTTGGAATGCTTGCTGATCCGAAAGAGGCCCGAGCTGGAAT-CAGGGAGGTTC 1404
Query 1347 ACTTTCTTCCATTCAATCCCACTG-ACAAGAGGACGGCTCTT-ACATATATTGACAGTGA 1404
|||| ||||||||||| ||| || ||||||| || ||| || || || || ||| |||
Sbjct 1405 ACTTCCTTCCATTCAA-CCCGGTGGACAAGAGAACTGCT-TTGACTTACATCGACTCTGA 1462
Query 1405 TGGTAAAATG-CATAGGGTCAGCAAAGGTGCACCTGAGCAAATCCTAAATCTTGCACACA 1463
|||||| || || || |||||||||||||| || ||||| ||||| | ||||| || |
Sbjct 1463 TGGTAAC-TGGCACAGAGTCAGCAAAGGTGCTCCCGAGCAGATCCTTGACCTTGC-CA-A 1519
Query 1464 ATAGAGCAGAGATTGAGC---GGA-GA-G-TACA-TGCT-GTAATAGACAAGTTCGCTGA 1515
| | ||| | ||| | ||| || | ||| | || ||| | ||||||| ||||||
Sbjct 1520 -T-GC-CAG-GCCTGACCTTAGGAAGAAGGTACTCT-CTTGTATT-GACAAGTACGCTGA 1573
Query 1516 ACGGGGT-TT-GCGATCTCTTGCC-GTGGCATAC--CAGGAAGTTCCGGAAGGGA-CGAA 1569
|| ||| || | | || ||| | || || | | |||| || || || | | | ||
Sbjct 1574 GCGCGGTCTTAG-G-TCA-TTGGCAGTAGC-T-CGTCAGGTGGTCCCCGA-GAAAACAAA 1627
Query 1570 AGAAAGTGCTGGAGGCCCTTGGCAATTTATGGGTCTCAT-GCCTCTTTTTGACCCACCTA 1628
|||||| | || || || ||| ||||| | || || | ||||||||||||||| || |
Sbjct 1628 AGAAAGCCCAGGTGGGCCATGGGAATTTGTTGG-CTTGTTGCCTCTTTTTGACCCTCCAA 1686
Query 1629 GGCATGACAGTGCCGAGACAATTAGAAGGGCTTTAAATCTTGGGGTGAATGTTAAAATGA 1688
| ||||||||||| || || ||| | ||||| || ||||| || || |||||||| ||||
Sbjct 1687 GACATGACAGTGCTGAAACCATTCGTAGGGCGTTGAATCTCGGTGTTAATGTTAAGATGA 1746
Query 1689 TCACAGGGGATCAG-TTGGCTATAGGAAAAGAGACTGGCCGCCGT-TTAGGAATGGGAAC 1746
|||| || ||||| ||| |||| || || || || || ||| | || |||||||||||
Sbjct 1747 TCACTGGTGATCAACTTG-CTATTGGTAAGGAAACCGGTCGCAGGCTT-GGAATGGGAAC 1804
Query 1747 CAACATGTACCCCTCAT-CTGCT-TTGCTTGG-ACAGCACAAGGA-T-GAGTCTATTGG- 1800
||| ||||| || || | | ||| || || || || | ||||||| | || | ||||
Sbjct 1805 CAATATGTATCCATC-TGCGGCTCTT-CTCGGTACCG-ACAAGGACTCGAA-C-ATTGCA 1859
Query 1801 TGCCTTACCCA-TCGATGATCTT-ATAGAAAAGGCCGACGGCTTTGCTGGCGTTTTTCCT 1858
| || | ||| | || || || || |||||||| || || ||||| ||||| |||||
Sbjct 1860 T-CCAT-CCCTGTTGAGGAG-TTGATTGAAAAGGCTGATGGGTTTGCCGGCGTCTTTCCA 1916
Query 1859 GAGCATAAATATGAGATAGTTAAGC-GACTACAAGCGAGGAAGCATATCTGT-GGAATGA 1916
||||| |||||||| || || || | || || | ||||||||| || ||| || ||||
Sbjct 1917 GAGCACAAATATGAAATTGTGAAAAAG-CTGCAGGAGAGGAAGCACAT-TGTTGGTATGA 1974
Query 1917 CAGGTGATGGAGTAAATGATGCGCCTGCTCTT-AA-AAAGGCTGATATTGGCATTGCAGT 1974
| |||||||| || |||||||| || ||| || || |||| | ||||| || ||||| ||
Sbjct 1975 CCGGTGATGGTGTTAATGATGCACCCGCT-TTGAAGAAAG-CAGATATCGGTATTGCTGT 2032
Query 1975 TGCTGATGCAACTGATGCAGCACGTAGTGCTTCAGATATCGTTCTTACTGAACCTGGTCT 2034
|| ||||| || ||||| || ||| | ||||| ||||||||||| || |||||||| ||
Sbjct 2033 GGCCGATGCTACAGATGCTGCTCGTGGGGCTTCCGATATCGTTCTCACAGAACCTGGGCT 2092
Query 2035 TAGTGTTATCATCAGCGCTGT-CTTAACCAGCCGTGCTATCTTCCAGAGAATGAAAAATT 2093
||||| |||||||| || || || | | ||| | |||||||||||||||||||| || |
Sbjct 2093 GAGTGTCATCATCAGTGCCGTTCTCA-CTAGCAGAGCTATCTTCCAGAGAATGAAGAACT 2151
Query 2094 ATACAATCTATGCGGTTTCCATCACTATCCGTATTGT-TCTTGGCTTCATGCTGCTAGCT 2152
| || || ||||| || || ||||| ||||||||||| | |||| |||||||| | |||
Sbjct 2152 ACACCATTTATGCAGTCTCAATCACAATCCGTATTGTGT-TTGGTTTCATGCTTATTGCT 2210
Query 2153 CTTATATGG-AAGTTTGACTT-TCCACCCTTCATGGTTCTTATCATTGCCATTCTGAATG 2210
|| |||||| || |||||||| || | ||||||||||| || |||||||| || ||||
Sbjct 2211 CTGATATGGGAA-TTTGACTTCTCGGCA-TTCATGGTTCTGATTATTGCCATCCTTAATG 2268
Query 2211 ATGGCACAATTATGACAATATCAAAAGACAGAGTGAAACCTTC-CCCTCTTCCAGATAGC 2269
| || || || |||||||| ||||| |||||||| || || || ||| | || ||||||
Sbjct 2269 ACGGTACTATCATGACAATCTCAAAGGACAGAGTCAAGCCATCTCCCACA-CCTGATAGC 2327
Query 2270 TGGAAACTCTCAGAGATTTTTGCAACTGGCGTTGTGTTTGGGAG-CTA-CATGGCGATGA 2327
||||| ||| ||| ||||| || ||||| ||||| | ||||| ||| || | | || |
Sbjct 2328 TGGAAGCTCAAAGAAATTTTCGCCACTGGAATTGTGCT-GGGAGGCTATCAAGCC-ATTA 2385
Query 2328 TGACAGTTATATTT-TTCTGGGCTGCAT-ATAAAACCGACTTCTTCCCGCGAACA--TTT 2383
||| ||||| ||| ||||||||||| | | || || ||||| ||| || || || |||
Sbjct 2386 TGAGTGTTAT-TTTCTTCTGGGCTGC-TCACAAGACTGACTTTTTCTCG-GA-CAAGTTT 2441
Query 2384 GGAGTT---TCAACCCTGGAGAAAACAGCACATGATGATTTCC-GGAAGCTTGCCTCGGC 2439
|| || |||| | || || || | || ||||| | || ||| | | |
Sbjct 2442 GGTGTGAGGTCAATCA-GG-GACAATA--AC--GATGAACTAATGGGTGCT-G--T-G-- 2489
Query 2440 AATATACCTGCAAGTCAGCATCATAAGTCAGGCGCTTATCTTTGTGACCCGATCACGGAG 2499
||| | | ||||| || ||||| ||||| || || |||||||| ||| | ||| ||||
Sbjct 2490 --TAT-C-TACAAGTTAGTATCATCAGTCAAGCTCTAATCTTTGTCACCAGGTCAAGGAG 2545
Query 2500 TTGGTC-TTATGTAGAACGTCCTGGG--ATGTTGCTTG-TGGTAGCCTTTATCCTTGCAC 2555
|||||| || ||| |||||||||||| | || || | |||| || || || ||||||
Sbjct 2546 TTGGTCATT-TGTTGAACGTCCTGGGGCAC-TT-CT-GATGGTTGCATTCGTCATTGCAC 2601
Query 2556 AATTGGTGGCTAC-TCTAATTGCAGTCTATGC-GAATTGGAGCTTTGCTGCAATAG---A 2610
|| |||| || || | | ||||| |||||||| || | ||| | || ||||| || |
Sbjct 2602 AACTGGTTGCGACAT-TGATTGCTGTCTATGCCGACT-GGA-CATT--TGCAA-AGGTGA 2655
Query 2611 AGGG-ATCGGGTGGGGATGGGCCGGGGTCATCTGGCTTTACAATATCGTATTCTATA-TT 2668
|||| ||||| ||||||||||| || || || ||| |||||| ||||||| | ||| ||
Sbjct 2656 AGGGTATCGGTTGGGGATGGGCTGGTGTGATTTGGATTTACAGTATCGTAA-C-ATACTT 2713
Query 2669 CCT-CTTGATATCATCAAGTTCTTG--ATTCGTTATGCCCTT-AGCGGAAGAGCCTGGGA 2724
|| | || || | ||||| | | ||||| ||| | || || |||| || || |||
Sbjct 2714 CCCACAGGACATTTTGAAGTT-T-GCCATTCGATATATC-TTGAGTGGAA-AGGCTTGGA 2769
Query 2725 TC---TTGTTATCGAACAA-AGGGTTGCATTCACGAGGCA-GAAGGATTTCGGGAAAGAA 2779
| ||||| | || ||| ||| ||| ||||||| || ||| |||| ||| | | |
Sbjct 2770 CCAGCTTGTT-T-GA-CAACAGGACTGCTTTCACGAC-CAAGAAAGATTACGGTATTGGA 2825
Query 2780 CAAAGGGA-GCTACAATGGGCACATGCACAGAGAACCCTGCACGGTCTGCAAGC-ACCAG 2837
|||| || ||| ||||||||||| || || || || ||||||||||||| || | ||
Sbjct 2826 GAAAGAGAAGCT-CAATGGGCACAAGCTCAAAGGACATTGCACGGTCTGCA-GCCAAAAG 2883
Query 2838 A---TGCTAAGATGTTCCCGGAGCGAACCCATTT-CA-ACGAGCTTTCCCAAATGGCCGA 2892
| || ||| || ||||| || || | || || | ||||| || | || || ||
Sbjct 2884 AAGATGTTAACATCTTCCCAGAAA-AAGGAAGTTACAGA-GAGCTGTCTGAGATCGCAGA 2941
Query 2893 AG-AAGCTAAGAGAAGAGCCGAGATCGCCAGG-TTGCGGGAGCTTCACACACTTAAGGGT 2950
| |||| |||||||| || ||||| || ||| || |||||||||||||||| |||||
Sbjct 2942 -GCAAGCCAAGAGAAGGGCTGAGATAGCTAGGCTTA-GGGAGCTTCACACACTGAAGGGA 2999
Query 2951 CATGTTGAATCTGTTGTCAGA-CTAAAAGG-TCTCGACATTGA 2991
||||| ||||| || | || | ||||| || | | ||||||||
Sbjct 3000 CATGTGGAATCAGTCG-CAAAGCTAAAGGGAT-TGGACATTGA 3040
> Ahg897637 jgi|Araly1|897637|Al_scaffold_0005_1603
Length=465
Score = 484 bits (262), Expect = 1e-135
Identities = 395/461 (86%), Gaps = 2/461 (0%)
Strand=Plus/Plus
Query 2560 GGTGGCTACTCTAATTGCAGTCTATGCGAATTGGAGCTTTGCTGCAATAGAAGGGATCGG 2619
|||||||||| |||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 6 GGTGGCTACTTTAATTGCAGTCTATGCAAATTGGAGCTTTGCTGCGATAGAAGGAATTGG 65
Query 2620 GTGGGGATGGGCCGGGGTCATCTGGCTTTACAATATCGTATTCTATATTCCTCTTGATAT 2679
||||||||||| |||||||| |||||||| || ||| |||||||| | || |||||| |
Sbjct 66 TTGGGGATGGGCTGGGGTCATTTGGCTTTATAACATCATATTCTATGTCCCACTTGATTT 125
Query 2680 CATCAAGTTCTTGATTC-GTTATGCCCTTAGCGGAAGAGCCTGGGATCTTGTTATCGAAC 2738
|||||| ||||| | || | || | ||||| || |||||||||||||||||||||||||
Sbjct 126 CATCAAATTCTTCA-TCTGCTACACTCTTAGTGGCAGAGCCTGGGATCTTGTTATCGAAC 184
Query 2739 AAAGGGTTGCATTCACGAGGCAGAAGGATTTCGGGAAAGAACAAAGGGAGCTACAATGGG 2798
|||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct 185 AAAGGGTTGCGTTCACAAGGCAAAAGGATTTTGGGAAAGAACAAAGAGAGCTGCAATGGG 244
Query 2799 CACATGCACAGAGAACCCTGCACGGTCTGCAAGCACCAGATGCTAAGATGTTCCCGGAGC 2858
| || ||||||||||| || || ||||| || ||||||||| ||||||||||| | || |
Sbjct 245 CGCACGCACAGAGAACGCTCCATGGTCTACAGGCACCAGATACTAAGATGTTCACAGATC 304
Query 2859 GAACCCATTTCAACGAGCTTTCCCAAATGGCCGAAGAAGCTAAGAGAAGAGCCGAGATCG 2918
|||||||| || || ||| ||||||||| |||||||| ||||| ||||| || ||||
Sbjct 305 GAACCCATGTCTGTGAACTTAACCAAATGGCTGAAGAAGCCAAGAGGAGAGCTGAAATCG 364
Query 2919 CCAGGTTGCGGGAGCTTCACACACTTAAGGGTCATGTTGAATCTGTTGTCAGACTAAAAG 2978
| ||||||||||| |||||||| || ||||| ||||||||||| || || ||||| ||||
Sbjct 365 CTAGGTTGCGGGAACTTCACACGCTCAAGGGCCATGTTGAATCAGTGGTGAGACTCAAAG 424
Query 2979 GTCTCGACATTGAAACCATTCAACAAGCTTACACCGTCTGA 3019
| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 425 GACTCGACATAGAAACCATTCAACAAGCTTACACTGTCTGA 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123458766812
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5