BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62720.1 Length=1023 Score E Sequences producing significant alignments: (Bits) Value Ahg496454 jgi|Araly1|496454|fgenesh2_kg.8__2270__AT5G62720.1 1415 0.0 > Ahg496454 jgi|Araly1|496454|fgenesh2_kg.8__2270__AT5G62720.1 Length=926 Score = 1415 bits (766), Expect = 0.0 Identities = 849/890 (95%), Gaps = 2/890 (0%) Strand=Plus/Plus Query 1 GTCTGTCTCCTATTGGCTAAGAAAACAGAGAGAATCGGTATTTTTAGCCTTTGCTAAGAT 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCTCTCTCCTATTGGCTAAGAAAACAGAGAGAATCGGTATTTTTAGCCTTTGCTAAGAT 60 Query 61 ATTTTGATCAAAAATCCCACTTTTGAGCGGTCTTATCTTTATTCTCCACCTCAAAGGACC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATTTTGATCAAAAATCCCACTTTTGAGCGGTCTTATCTTTATTCTCCACCTCAAAGGACC 120 Query 121 ATTTCTCATGGCTTCTGTTCCGGTGAGACCTCTACCTCTTCTTCGCCGGAACATCACCTC 180 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 121 ATTTCTCATGGCTTCTGTTCCGGTGAAACCACTACCTCTTCTTCGCCGGAACATCACCTC 180 Query 181 GACGACGGCTTCGAAATCATCTCCAATGCTCGCCAACGTTTCGAGCCGGCATTCTCTCGG 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 GACGACGGCTTCGAAATCATCTCCAATGCTCGCCAACGTTTCGAGCCGGCATTTTCTCGG 240 Query 241 GATCTCTACGTATGATGAATTTTTGAAGCAAATAAAAACTCCGGCAACTGTGAA-CCACC 299 ||||| ||||||| | |||| |||| |||||| | |||||| || || | || ||||| Sbjct 241 GATCTTTACGTATAAAGAATCCTTGAGGCAAATGAGAACTCCAGCGTCTTT-AAGCCACC 299 Query 300 GGCGGCGAGTAAGTACGGTGGTGGCGTCGGCGGGAAACTTGACGGCGCCGTCGTGGGATT 359 | ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| | Sbjct 300 GCCGGAGAGTAAGTACGGTGGTGTCATCGGCGGGAAACTTGACGGCGCCGTCGTGGGACT 359 Query 360 CGTGGAAGCCTGATAAGACGGCGGCGGCTACGGCTCTTTTGCTGAGTGACGTCATATGGC 419 |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 360 CGTGGAAGCCAGATAAGACGGCGGCGGCTACGGCTCTGTTGCTGAGTGACGTCATTTGGC 419 Query 420 CTGCTGCTGGAGCGTTTGCGGCAATGGCATTATTGGGAAGAATGGATCAAATGCTATCTC 479 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 420 CTGCAGCTGGAGCGTTTGCGGCAATGGCAATATTGGGAAGAATGGATCAAATGCTATCTC 479 Query 480 CGAAAGGCATTTCAATGTCAGTTGCACCACTTGGCGCAGTCTCCGCCATTCTTTTCATCA 539 | ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 480 CAAAAGGGATTTCAATGTCAGTTGCACCACTTGGTGCTGTCTCCGCCATTCTTTTCATCA 539 Query 540 CCCCTTCTGCTCCTGCTGCTCGGAAATACAATATATTTTTGGCTCAAATAGGTTGTGCTG 599 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 540 CTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTTTTGGCTCAAATAGGTTGTGCTG 599 Query 600 CGATTGGGGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAGTGTCGCCC 659 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CGATTGGAGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAGTGTCGCCC 659 Query 660 TCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGCGGCGAGCT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGCGGCGAGCT 719 Query 720 TACCACTAATGTTCATAGATGGAGCAAAGTTCCATCACTTGAATTTCTGGTACGCATTGT 779 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 720 TACCATTAATGTTCATAGATGGAGCAAAGTTCCATCACTTGAATTTCTGGTATGCATTGT 779 Query 780 TCCCAGGTGCAGCTGCTTGTGTCATCCTCTGCCTTCTCCAATCGATCGTATGTTACTTGA 839 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 780 TCCCAGGTGCAGCTGCTTGTGTCATCCTATGCCTTCTCCAATCGATCGTATGTTACTTGA 839 Query 840 AGGAAAACATGAAATTTTGATGAATCACCAAGCGACATGTACGATCGAAT 889 ||||||||||||||||||||||||||| ||||| ||| |||||||||||| Sbjct 840 AGGAAAACATGAAATTTTGATGAATCATCAAGCAACACGTACGATCGAAT 889 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38046671166 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5