BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62810.1 Length=1918 Score E Sequences producing significant alignments: (Bits) Value Ahg496464 jgi|Araly1|496464|fgenesh2_kg.8__2280__AT5G62810.1 2848 0.0 > Ahg496464 jgi|Araly1|496464|fgenesh2_kg.8__2280__AT5G62810.1 Length=1896 Score = 2848 bits (1542), Expect = 0.0 Identities = 1762/1865 (94%), Gaps = 27/1865 (1%) Strand=Plus/Plus Query 70 ACCTCGATTTGAGCAAATCCTGATTTACTCTCATCCTCATCATCTCTCATCATCGAGATT 129 ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| Sbjct 43 ACCTCGATTTGAGCAAAACCTGATTTACTCTCATCCTCATCGTCTCTCATCTTCGAGATT 102 Query 130 CATAGTCTCTTTTGCCGCTTGGATTCTTCCAAGGTTAGTGAGCTGCTATGGCAACTCATC 189 ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 103 TATAGTCTCTTTCGCCGCTTGGATTCTTCCAAGGTTGGTGAGCTGCTATGGCAACTCATC 162 Query 190 AGCAAACGCAACCTCCTTCCGATTTTCCCGCTCTTGCCGATGAAAATTCCCAGATTCCAG 249 ||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 163 AGCAAACTCAACCTCCTTCCGATTTTCCCGCTCCTGCCGATGACAATTCCCAGATTCCAG 222 Query 250 AGGCTACTAAGCCTGCTAATGAGGTTCAGCAAGCTACC--A--T-A-G---C---T---C 294 ||||||| |||||||||||||||||||| ||||||||| | | | | | | | Sbjct 223 AGGCTACAAAGCCTGCTAATGAGGTTCAACAAGCTACCATAGCTCAGGAAACTGTTAAGC 282 Query 295 AGGATCCTCCAACATCTGTGTTTAAGAATTCTGAACCAATACGGGAGGATCAAATTCAGA 354 ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| Sbjct 283 AGGATCCTCCAACATCTGTGTTTAAGAATTCAGAACCAATTCGAGAGGATCAAATTCAGA 342 Query 355 ACGCTATCAAATTCCTTTCGCACCCGAGGGTTAGAGGCTCTCCTGTTATACATAGAAGAT 414 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 ACGCTATCAAATTTCTTTCGCACCCGAGGGTTAGAGGCTCTCCTGTTATACATAGAAGAT 402 Query 415 CTTTTCTTGAGAGGAAAGGTCTCACTAAAGAAGAGATTGACGAAGCTTTCCGCCGTGTTC 474 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 403 CTTTTCTTGAGAGGAAAGGACTCACTAAAGAAGAGATTGACGAAGCATTCCGCCGTGTTC 462 Query 475 CTGATCCACCACCAAGTTCGCAGACAACTGTTACAACAAGTCAAGATGGACAGCAAGCAG 534 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 463 CTGATCCACCGCCAAGTTCGCAGACAACTGTT---ACAAGTCAAGATGGACAGCAAGCAG 519 Query 535 TGTCAACTGTTCAGCCACAAGCTATGCAGCCTGTAGTAGCTGCTCCTGCTCCACTCATTG 594 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 520 TGTCAACTGTTCCGCCACAAGCTATGCAGCCTGTAGTAGCTGCTCCTGCTCCACTCGTTG 579 Query 595 TGACTCCACAGGCAGCTTTTCTCTCTCGGTTTCGCTGGTACCATGCTATTCTTGCTGTTG 654 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 580 TGACTCCGCAGGCAGCTTTTCTCTCTCGGTTTCGCTGGTACCATGCTATTCTTGCTGTAG 639 Query 655 GAGTACTTGCAGCCTCTGGTGCCGGTACAGCTGTTTTTATTAAGAGATCTCTCATACCCA 714 ||||||| ||||| ||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct 640 GAGTACTAGCAGCTTCTGGTGCCGGAACAGCTGTTTTTATAAAGAAATCTCTCATACCCA 699 Query 715 GATTTAAATCCTGGGTCCAAAGAATTATGTTGGAAGAAGAAACTGACCCTCTGAAGAAAG 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 700 GATTTAAATCCTGGGTCCAAAGAATTATGTTGGAAGAAGAAACTGACCCTCTGAAGAAAG 759 Query 775 CTGATGCTAAACCTAGCTTAGCTGAAGAAGCTGTAGCTGCAGCCAAAGCTGCTTCTGCGG 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 760 CTGATGCTAAACCTAGCTTAGCTGAAGAAGCTGTAGCTGCAGCCAAAGCTGCTTCTGCGG 819 Query 835 CTGCTTCTGATGTAGCCAGGGTTAGTCAGGAAATGATGATAACAAAGAATGAAGAGAGGA 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 820 CTGCTTCTGATGTAGCCAGGGTTAGTCAGGAAATGATGATAACAAAGAATGAAGAGAGGA 879 Query 895 AATATTTTGAGGACTTAACGCACCTGTTAGGTGTCCAAGTACAAGAAATGAAGTCCTTGA 954 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 880 AATATTTTGAGGACTTAACGCGCCTGTTAGGTGTCCAAGTACAAGAAATGAAGTCCTTGA 939 Query 955 GCAATAATATCCGTAAGCTTGAAGGGCAATCCAACAACATCCCAAAGATTTATTCAGCTG 1014 ||||||||||||||| ||| ||||| ||| |||||||||| |||||||||||||| |||| Sbjct 940 GCAATAATATCCGTAGGCTCGAAGGACAACCCAACAACATTCCAAAGATTTATTCCGCTG 999 Query 1015 ATCAAGAGGTTTATAATGGTTCGGTCACTACAGCAAGGAAACCCTATACAAATGGCAGCA 1074 |||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| Sbjct 1000 ATCAAGAGGTTTATAATGGTTCAGTCACTGCAGCAAGGAAACTCTATACAAATGGCAGCA 1059 Query 1075 ATGTTGATTATGACACACGTTCAGCACGATCTGCATCTCCTCCTGCGGCACCAGCTGATT 1134 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1060 ACGTTGATTATGACACACGTTCAGCACGATCTGCATCTCCTCCTGCGCCACCAGCTGATT 1119 Query 1135 CGTCGGCGCCCCCTCATCCAAAGTCATACATGGATATAATGTCTATGATCCAGAGAGGAG 1194 | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1120 CCTCTGTGCCCCCTCATCCAAAGTCATACATGGATATAATGTCTATGATCCAGAGAGGAG 1179 Query 1195 AGAAGCCTTCAAACATTCGGGAGATTAACGACATGCCGCCCAATCCAAACCAACCACTAT 1254 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1180 AGAAGCCTTCAAACATTCGGGAGATTAACGACATGCCGCCTAATCCGAACCAACCACTAT 1239 Query 1255 CAGATCCACGCATTGCTCCCAAATCAAAGCCATGGGACTATGGTCAAGCGCCGCAAGACG 1314 ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 1240 CAGATCCACGCATCGCTCCCAAATCTAAGCCATGGGACTATGGTCAAGCGCCACAAGACG 1299 Query 1315 AGAGTTCCAATGGTCAATGGTGGCAACAGAAAAACCCTAGATCCACGGATTTCGGATACG 1374 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || | Sbjct 1300 AGAGTTCTAATGGTCATTGGTGGCAACAGAAAAACCCTAGATCCACGGATTTCGGCTATG 1359 Query 1375 AGACAACAACAGCGGCGCGTTTCACTGCTAACCAAAATGAAACAAGTACAATGGAACCAG 1434 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 1360 AGACAACAACAGCGGCGCGTTTCACTGGTAACCAAAATGAAACAAGTACAGTGGAACCAG 1419 Query 1435 CAGCTTTCCAGAGGCAACGATCATGGGTACCTCCACAACCACCTCCAGTTGCCATGGCAG 1494 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1420 CAGCTTTCCAGAGGCAACGGTCATGGGTACCTCCACAACCACCTCCAGTTGCCATGGCAG 1479 Query 1495 AAGCAGTC-GAGGCCATTCGCCGTCCTAAGCCACAAGCTAAGATAGACCAAGAAGCAGCT 1553 |||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1480 AAGCAG-CAGAGGCCATTCGCCGTCCTAAGCCACGAGCTAAGATAGACCAAGAAGCAGCT 1538 Query 1554 GCTAGTGATGGCCAGTCAGGTGTGAGCGATGAGTTACAGAAGATCACTAAATTCTCCGAA 1613 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1539 GCTAGTGATGATCAGTCAGGTGTGAGCGATGAGTTACAGAAGATCACTAAGTTCTCTGAA 1598 Query 1614 TCTGGTGGTGATGGGTCAGGAGGAATTAAGATCGCAGAGATACAAGAAGAAACAGAACAG 1673 |||||||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct 1599 TCTGGTGGTGATGGATCAGGAGGAATTCAGATCACAGAGATAGAAGAAGAAACAGAACAG 1658 Query 1674 CAACATATCAGCCAGGAAGGGAACTAAAAACAATAATAATTAGGGGTTATTGATACTTTA 1733 |||||||||||||| ||||||| ||| |||||||||| | ||||||| ||||||||||| Sbjct 1659 CAACATATCAGCCAAGAAGGGA-CTACAAACAATAAT--T-AGGGGTTCTTGATACTTTA 1714 Query 1734 TGAGGTTTGCCTGTAAGAAAACATGCATTTAGGTCTTGGGATTTATCACCACCTACCTTC 1793 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1715 TGAGGTTTGCTTGTAAGAAAACATGCATTTAGGTCTTGGGATATATCACCACCTACCTTC 1774 Query 1794 ATTTAATAAAATATGTCTTGCTACACAAGTAAACTCAGTCATTTGATGATTACTTGTCTT 1853 ||| ||||| |||| ||||||| |||||||||| ||||||||||||| | |||||||| Sbjct 1775 ATTAAATAATATATATCTTGCTGCACAAGTAAATTCAGTCATTTGAT--TG-CTTGTCTT 1831 Query 1854 ATTTTAATATTTTGAAACTTGTATCACACATTACCATTCTAAGCTATAAGAGAGACTGTA 1913 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1832 ATTTTAATATATCGAAACTTGTATCACACATTACCATTCTAAGCTATAAGAGAGACTGTA 1891 Query 1914 CATAG 1918 ||||| Sbjct 1892 CATAG 1896 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72066743540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5