BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62840.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332511 jgi|Araly1|332511|fgenesh1_pm.C_scaffold_8001854 1413 0.0
> Ahg332511 jgi|Araly1|332511|fgenesh1_pm.C_scaffold_8001854
Length=888
Score = 1413 bits (765), Expect = 0.0
Identities = 852/894 (95%), Gaps = 6/894 (1%)
Strand=Plus/Plus
Query 12 ATGTTATCATCATCACCGGCGGTCACCACCGCCTCACACTTACATCCTCCTCCGTCGCCG 71
|||||||||||||| ||||||||||||| | ||| | |||||||||||| || |||
Sbjct 1 ATGTTATCATCATCGCCGGCGGTCACCA----C-CAC-CGCACATCCTCCTCCATCACCG 54
Query 72 GAAACCTACCAAATTCCTCTGAATTTACTTTCCTCGCCGCATATTACCCGCCGAGACCTT 131
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 55 GAAACCTACCAAATTCCTCTGAATTTACTTTCCTCGCCGCGTATTACTCGCCGAGACCTT 114
Query 132 TTCAAAACTCTCTCCGTATGTATTGCCACACCATCACTCTCCGTCTCCATCGCCGCACCA 191
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 115 TTCAAGACTCTATCCGTATGTATTGCCACACCATCACTCTCAGTCTCCATCGCCGCACCA 174
Query 192 GCTAACGCACGCGGTCTCTTTCAAATGCCGCCTCTCCGGCTCTCTAATCGTTATTACCTT 251
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 175 ACCAACGCACGCGGCCTCTTTCAAATGCCGCCTCTCCGGCTATCTAATCGTTATTACCTT 234
Query 252 GTGAGAGCTGGGGAATCAGATTACGAAAGCTTAGGGATAATCAACACAAACCCGGTTGCC 311
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 235 GTGAGAGCTGGGGAATCAGATTATGAGAGCTTAGGGATAATCAACACAAACCCGGTTGCC 294
Query 312 AAAACATCGGTAGATAGCGGATTATCAGAGAAAGGTAAGAAGCAGACTCTGAGAGCTGCG 371
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 295 AAAACATCGGTAGATAGCGGATTATCAGAGAAAGGTAAGAAGCAGACGCTGAGAGCTGCG 354
Query 372 TTACAGTTAAAAGCAATGGGAGCTTGTGACCGAAACTGTTGGCTCTGGCCTTCCATAACA 431
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TTACAGCTAAAGGCAATGGGAGCTTGTGACCGAAACTGTTGGCTCTGGCCTTCCATAACA 414
Query 432 CAGAGAGCTTATCAGGCTGCTGAAATCATCGCCGCCATCAATGGAATTAGTCGCAGCTAT 491
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 415 CAGAGAGCTTATCAGGCTGCTGAAATCATCGCCGCCATCAATGGAATCAGTCGCAGCTAT 474
Query 492 ATAGTTCCGGAGTATAGCTTCCTTGATGCTCGTGGTTTAGGAGCTTACGAAGGCAAGAAG 551
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 475 ATAGTTCCGGAATATAGCTTCCTCGATGCTCGTGGTTTAGGAGCTTACGAAGGCAAGAAG 534
Query 552 CTTGAATCTATATCAGAAGTGTATGCATTAGACTCAATATCGATGAAGACAAAACCTCCT 611
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 535 CTAGAATCCATATCAGAAGTTTATGCATTAGACTCAATATCGATGAAGACAAAACCTCCT 594
Query 612 CCTATAAGCGACGGTACCCCCAACGAGAGTGTATCAGATGTATTTGTGCGTGTGACGCAA 671
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 595 CCTATAAGCGACGGTACCCCCAATGAGAGTGTAGCAGATGTATTTGTGCGTGTGACGCAG 654
Query 672 CTCATGTCTATTCTCGAGACTCAATACTCAGAAGACACAATCGTGATTGTTTCGCCTGAT 731
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 655 CTCATGTCTATTCTCGAGACTCAATACTCAGAGGACACAATCGTGATTGTTTCACCTGAT 714
Query 732 TCAGACAACTTATCGGTGTTACAAGCTGGTATCCAAGGACTCGACCTTCGAAGGCACTCG 791
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 715 TCAGACAACTTATCGGTGTTACAAGCTGGTATTCAAGGACTCGACCTTCGCAGGCACTCA 774
Query 792 GAGTTGTATTTTGGACCAGGAGAAGTAAGATTGTTGGATGCAAACAGCATTCCAGTGTAT 851
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 775 GAGTTGTATTTTGGACCAGGAGAAGTAAGATTGTTAGATGCAAACAGCATTCCTGTGTAT 834
Query 852 AAGCAACCTGCTTCTGCCGTATATAAGTGTAAGAAACCACCAAACTGTGACTAA 905
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 835 AAGCAACCTGCTTCTGCCGTATATAAGTGTAAGAACCCACCAAACTGTGACTAA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5