BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62910.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496476 jgi|Araly1|496476|fgenesh2_kg.8__2292__AT5G62910.1 1794 0.0
Ahg897649 jgi|Araly1|897649|Al_scaffold_0005_1615 148 9e-35
Ahg948849 jgi|Araly1|948849|scaffold_800736.1 75.0 2e-12
> Ahg496476 jgi|Araly1|496476|fgenesh2_kg.8__2292__AT5G62910.1
Length=1296
Score = 1794 bits (971), Expect = 0.0
Identities = 1217/1328 (92%), Gaps = 48/1328 (4%)
Strand=Plus/Plus
Query 194 aaaaaTCTTCACGTTTCTtctctctctctctctctctctctcGAGCCACCAAATCTGAAT 253
||||||||||||||||| | ||| | |||||||| |||| |||||||||||||||||
Sbjct 1 AAAAATCTTCACGTTTC-T-TCT-T-TCTCTCTC-GAGTCTCAAGCCACCAAATCTGAAT 55
Query 254 TAGGGTTTTTGAGAATATTCATCTTTTGATTTCAAATTCT--TCACCCACTGTGTAATTT 311
|||||||||||||||| |||||||||||||||||| || | ||||||||||||||| ||
Sbjct 56 TAGGGTTTTTGAGAATCTTCATCTTTTGATTTCAATTTTTAATCACCCACTGTGTAA-TT 114
Query 312 CACTCGTCAGGATTCATCTGCGGAATCATGATTACAGATTCGATCACCAACGCTTCTGCT 371
|||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||
Sbjct 115 CACTCGTCAGGATTCATCTGTGAAATCATGATTTCAGATTCGATCACCAACGCTTCTGCT 174
Query 372 ACTTCAGCTCCGAGAGATTCCGGAAAGAAGAAGAGGAACAATAAGTCGGCTAAGATGAAG 431
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 175 ACTTCAGCTCCAAGAGATTCCGGGAAGAAGAAGAGGAACAATAAGTCGGCTAAGATGAAG 234
Query 432 CAGAACAAGCTTGGTCTCCGTCGTGAGCAATGGCTTTCTCAAGTTGCGGTGAGCAATAAG 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CAGAACAAGCTTGGTCTCCGTCGTGAGCAATGGCTTTCTCAAGTTGCGGTGAGCAATAAG 294
Query 492 GAAGTTAAAGAGGAGAGGAGTGTTAATCGTAGTCAAAAGCCTCATCATGAGAGTTCAGAT 551
|||| |||||||||||||||||||||||| ||| ||||| || | || ||
Sbjct 295 GAAGGTAAAGAGGAGAGGAGTGTTAATCGAAGTGAAAAG-----TC-T--GA--TC---- 340
Query 552 AAGGTGCGTAGAGAAGAGGATAACAATGGTGGGAATAATCTTCTTCATCATGAGAGTTTT 611
||||| |||||||||||| ||| || ||||||||||| |||||||||||||||||||
Sbjct 341 -AGGTGTGTAGAGAAGAGGGTAATAACGGTGGGAATAA---TCTTCATCATGAGAGTTTT 396
Query 612 ATGGAGTCACCTTCAAATAGCTCTGTTGGTGGTACATATTCGAGCACTAACTTCAGTGGG 671
|||||||| ||||| ||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 397 ATGGAGTCGCCTTCGAATAGCTCTGTTGGTGGTACAGATTCAAGCACTAATTTCAGTGGG 456
Query 672 AGAAGTAGCAGGAGTAGTAGTAGCAGCAGTGGCTTTTGCTCTGGTAATATAACAGAAGAG 731
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 457 AGAAGTAGCAGGAGTAGTGGTAGCAGCAGTGGCTTTTGCTCTGGTAATGTAACAGAAGAG 516
Query 732 G--AA---A-ATG-T-A-GACGATGATGATGATGGGTGTGTGGATGATTGGGAAGCTGTT 782
| || | ||| | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 517 GAAAATGTAGATGATGATGATGATGATGATGATGGGTGTGTGGATGATTGGGAAGCTGTT 576
Query 783 GCTGATGCGTTAGCGGCTGAGGAAGAGATTGAGAAAAAGAGTCGTCCTCTTGAGTCTGTG 842
|||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 577 GCTGATGCGTTAGCGGCTGAGGAAGAGATTGAGAAAGAGAGTCGTCTTCATGAGTCTGTC 636
Query 843 AAAGAGCAAGTGAGTGTTGGACAATCAGCTTCTAATGTGTGTGATTCGTCGATTAGTGAT 902
|||||||||| ||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 637 AAAGAGCAAGAGAGTGTTGGACAATCAGCTTCTAATGTGTGTGATTCG---ATAAGGGAT 693
Query 903 GCATCAGATGTTGTGGGTGTTGAAGATCCAAAGCAGGAATGCTTGAGAGTGTCATCAAGG 962
||||||||||||||| ||||| |||||||| ||||||| |||||||||||| | ||||||
Sbjct 694 GCATCAGATGTTGTGTGTGTTAAAGATCCAGAGCAGGATTGCTTGAGAGTGGCTTCAAGG 753
Query 963 AAGCA-GACTAGTAATAGAGCTTGGAGGCTAGATGATGACCTTCGCCCACAGGGGTTACC 1021
||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 754 AAGCAAGAG-AGTAATAGAGCTTGGAGGCCAGATGATGACCTTCGCCCTCAGGGGTTACC 812
Query 1022 TAATTTGGCGAAGCAGCTTAGTTTTCCGGAGTTAGACAAGCGTTTTAGCTCTGTGGCGAT 1081
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 813 TAATTTGGCGAAGCAGCTTAGTTTTCCTGAGTTAGACAAGCGTTTTAGCTCTGTGGCGAT 872
Query 1082 TCCGTCTTCATGTCCCATATGCTACGAAGACTTGGACTTGACGGATTCGAATTTCCTCCC 1141
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 873 TCCGTCTTCATGTCCCATATGCTACGAAGACTTGGACTTGACGGATTCAAATTTTCTGCC 932
Query 1142 CTGTCCTTGTGGATTTCGGCTCTGTCTGTTCTGCCACAAGACCATTTGCGATGGAGATGG 1201
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 933 TTGTCCTTGCGGATTCCGGCTCTGTCTGTTCTGCCACAAGACAATTTGCGATGGAGATGG 992
Query 1202 GCGTTGTCCAGGCTGCAGGAAACCCTATGAACGGAATATGGTCAAGGCTGAGACTAGTAT 1261
|||||||||||| ||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 993 GCGTTGTCCAGGGTGCAGGAAACCTTATGAACGGAATGCGATCAAGGCTGAGACTAGTAT 1052
Query 1262 TCAAGGTGGTGGTCTAACAATTCGGTTGGCTCGTTCGTCTAGCATGTTTTGCAAGTTTTA 1321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1053 TCAAGGTGGTGGTCTAACAATTCGGTTGGCTCGTTCTTCTAGCATGTTTTGCAAGTTTTA 1112
Query 1322 AAAGGAGAGGTGCGGTTTTCTCAA--CCATGTTGTCTTTTGGAACTCGAGAACTTAAGC- 1378
||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 1113 AAAGGAGAGCTGCGGTTTTCGCAAAACCATGTTGTCTTTTGGAACTCGAGAACTTGTGCG 1172
Query 1379 TCTGTTTTCTATGTCATCTATGGTTCTAAGTCTGAAACACTGTGGTGATGATGTAGAATG 1438
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1173 T-TGTTTTCTATGTCATCGATGGTTCTAAGTCTGAAACACTGTGGTGATGATGTAGAGTG 1231
Query 1439 TGATGTGTGAATACATAAAAGGTGGTACAGAAAATGATTCAAATACATTTAGATAGTTTC 1498
||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1232 TGATGTGTGAATACATAAA-GGTGGTACAGAAAAT--T-CAAATACATTTAGATAGTTTC 1287
Query 1499 AATAATGA 1506
||||||||
Sbjct 1288 AATAATGA 1295
> Ahg897649 jgi|Araly1|897649|Al_scaffold_0005_1615
Length=1074
Score = 148 bits (80), Expect = 9e-35
Identities = 135/160 (84%), Gaps = 10/160 (6%)
Strand=Plus/Plus
Query 339 ATGATTACAGATTCGATCACCAACGCTTCTGCTACTTCAGCT-----C-CGAGAGATTCC 392
|||||| | ||||||||||||||||||||||||||||||||| | |||| |||| |
Sbjct 1 ATGATTTCTGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCAAGCGCGAGGGATTTC 60
Query 393 GGAAAGAAGAAGAGGAAC-AATAAGTCGGCTAAGA-TGAAGCAGAACAAGCTTGGTCTCC 450
||||| ||||| ||| || || | ||||||||| | |||| |||| |||||| ||||| |
Sbjct 61 GGAAAAAAGAAAAGG-ACGAACAGGTCGGCTAA-ATTGAAACAGAGCAAGCTAGGTCTTC 118
Query 451 GTCGTGAGCAATGGCTTTCTCAAGTTGCGGTGAGCAATAA 490
||||||||||||||||||||||||||||| ||| |||||
Sbjct 119 GTCGTGAGCAATGGCTTTCTCAAGTTGCGCTGATTAATAA 158
> Ahg948849 jgi|Araly1|948849|scaffold_800736.1
Length=305
Score = 75.0 bits (40), Expect = 2e-12
Identities = 40/40 (100%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 422 TAAGATGAAGCAGAACAAGCTTGGTCTCCGTCGTGAGCAA 461
||||||||||||||||||||||||||||||||||||||||
Sbjct 17 TAAGATGAAGCAGAACAAGCTTGGTCTCCGTCGTGAGCAA 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5