BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63040.1 Length=1441 Score E Sequences producing significant alignments: (Bits) Value Ahg343424 jgi|Araly1|343424|fgenesh1_pg.C_scaffold_3003187 1371 0.0 > Ahg343424 jgi|Araly1|343424|fgenesh1_pg.C_scaffold_3003187 Length=1224 Score = 1371 bits (742), Expect = 0.0 Identities = 879/945 (93%), Gaps = 10/945 (1%) Strand=Plus/Plus Query 449 TCTCTTCACATTTCC-TCAAGAGGCCAAAAACCAAGCGAAGTCTCCCGAAAGAGAACTTA 507 ||||||||||||||| || |||| |||||| ||||| ||||||| || ||||||| ||| Sbjct 283 TCTCTTCACATTTCCTTC-AGAGACCAAAATCCAAGAGAAGTCTTCCAAAAGAGAGTTTA 341 Query 508 TTTGCCTCTTGCTACTTCAGAAGAAAAGTTCCACTACACTGAAGATACAAC-AAATGATC 566 ||||||| |||| |||||||||||| ||||||| |||||||| | || || | ||| Sbjct 342 TTTGCCTTTTGCGACTTCAGAAGAACAGTTCCAGTACACTGACCAAAC-ACTCGACAATC 400 Query 567 CAGACACAGTAAGTCCCCAAATTGGCACCGAAGCTACACCTAGAGATGATGA-TTCAACT 625 |||| ||| ||||||||||||| || |||||||||||||| |||||| | | ||||||| Sbjct 401 CAGAAACAACAAGTCCCCAAATTCGCCCCGAAGCTACACCTCGAGATGGT-AGTTCAACT 459 Query 626 ATCCAATACAATAGAAATGACGGGAAACCGGGTTTCATTTCGTTTTACAATCCTCGGAAT 685 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 460 ATCCAATACAATGGAAATGACGGAAAACCGGGTTTCATTTCGTTTTACAATCCTCGGAAT 519 Query 686 AAAACTGAGGATATCATTATCCCCCCTGAAACTCAAAGTCCATGGGGACGCCTGCTCTGG 745 ||||| |||||||||||| |||| |||||| | |||||| |||||||||||||||||||| Sbjct 520 AAAACAGAGGATATCATTGTCCCTCCTGAATCACAAAGTACATGGGGACGCCTGCTCTGG 579 Query 746 CTCATTGGTCCTGCAGTCTTAGTCTCCTCTTTCATTTTACCTCCAGTTTACTTACGAAGA 805 |||||||||||||| |||||||| |||||||||||||| |||||| |||||||||||||| Sbjct 580 CTCATTGGTCCTGCTGTCTTAGTTTCCTCTTTCATTTTGCCTCCAATTTACTTACGAAGA 639 Query 806 ATAGTCTCAGCAGTTTTTGAAGATTCTTTGCTCACAGACTTCCTCATCCTGTTCTTCACC 865 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 640 ATAGTCTCAGCAGTTTTTGAAGACTCTTTGCTCACAGACTTCCTCATCCTGTTCTTCACC 699 Query 866 GAGGCTCTCTTCTACTGCGGAGTCGCTGCATTTCTTCTGATAATAGACCGCTCAA-GAAA 924 ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| Sbjct 700 GAGGCTCTCTTCTACTGTGGAGTCGCCGCATTTCTTCTGATAATAGACCGCTCAAGGAAA 759 Query 925 AGGATCCGGAAAAGTTCCCCAGAACCGAATCAATCCTTCTCAGTTAGGACAAAGAATCTC 984 | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 760 A-CATCCGGAAAAGTTCCCCAGAACCGTATCAATCCTTCTCAGTTAGGACAAAGAATCTC 818 Query 985 CTCTGTAGCAACATTAGTGCTGAGTCTCATGATTCCAATGGTGACAATGGGATTCGTCTG 1044 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 819 CTCTGTAGCAACATTAGTGCTGAGTCTCATGATTCCAATGGTGACAATGGGATTCGTTTG 878 Query 1045 GCCATGGACTGGACCTGCAGCATCAGCTACTCTTGCACCATACCTCGTTGGTATCGTTGT 1104 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 879 GCCATGGACTGGACCTGCAGCATCAGCTACTCTTGCACCGTACCTCGTTGGTATCGTTGT 938 Query 1105 TCAGTTTGCATTCGAACAGTACGCAAGATA-TCGTAACTCTCCATCATCTCCTATCATCC 1163 |||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| Sbjct 939 TCAGTTTGCATTCGAACAGTACTCAAGATACT-GTAACTCTCCATCATCTCCTATCATCC 997 Query 1164 CCATCATCTTTCAGGTATACAGACTTCATCAGCTGAACCGAGCGGCGCAACTAGTAACAG 1223 |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| Sbjct 998 CCATCATCTTTCAGGTATACAGACTTCATCAGCTGAACAGAGCGGCACAATTAGTAACAG 1057 Query 1224 CATTGTCATTTACGGTTAAAGGAGCAGAGGCAACAGTTAATAATCTGGCAATCAAGAAAT 1283 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 CATTGTCGTTTACGGTTAAAGGAGCAGAGGCAACAGTTAATAATCTGGCAATCAAGAAAT 1117 Query 1284 CACTGGGCACACTTTTGAATGTGATACAGGTTTTGGGTGTGATTTCAATCTGGTCTATAT 1343 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1118 CACTGGGTACACTTTTGAATGTGATACAAGTTTTAGGTGTGATTTCAATCTGGTCTATAT 1177 Query 1344 CTAGCTTCCTCATGTGGTTATCATCACCTTCCCAAAACCAGTCTT 1388 | |||||||||||||||||||| || ||||||||||| ||||||| Sbjct 1178 CAAGCTTCCTCATGTGGTTATCGTCTCCTTCCCAAAATCAGTCTT 1222 Score = 137 bits (74), Expect = 2e-31 Identities = 82/86 (95%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 290 ATGGCTGCTAAACTTGTGTCCTCCTCGGCTTCTTCTTTGGTTCCATCCATTTTCTCGCCG 349 |||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||| Sbjct 1 ATGGCTGCAAAACTTGTGTCCTCCTCGGCTTCTACTTTGGTTCCGTCCATTTTCTCACCG 60 Query 350 TTTCAACCTCGGAGTTCCTTTCAGTT 375 |||||||||||||||||||||||||| Sbjct 61 TTTCAACCTCGGAGTTCCTTTCAGTT 86 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53897696675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5