BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63110.1 Length=1746 Score E Sequences producing significant alignments: (Bits) Value Ahg496493 jgi|Araly1|496493|fgenesh2_kg.8__2309__AT5G63110.1 2782 0.0 Ahg897670 jgi|Araly1|897670|Al_scaffold_0005_1636 307 2e-82 > Ahg496493 jgi|Araly1|496493|fgenesh2_kg.8__2309__AT5G63110.1 Length=1725 Score = 2782 bits (1506), Expect = 0.0 Identities = 1660/1734 (96%), Gaps = 11/1734 (1%) Strand=Plus/Plus Query 15 TAGTAATGACTTTCTCAGGCATTGTTGACACAAATTTTGCTCTGAGT-AAAACTTGGGAA 73 |||||||||||||||||||||| || |||||||||||||||| |||| |||||||||| | Sbjct 1 TAGTAATGACTTTCTCAGGCATAGTAGACACAAATTTTGCTCGGAGTAAAAACTTGGGGA 60 Query 74 TagagagagactctgagtgagagagagattctgagtgagagacggagatggagGCAGACG 133 ||||||||||| || | ||| |||| || |||||||| ||||||||||||||| Sbjct 61 TAGAGAGAGACAGAGACTCTGAGTGAGA----GA--GAGAGACGAAGATGGAGGCAGACG 114 Query 134 AAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCT 193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 AAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCT 174 Query 194 ACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGCCACCCGATGAAGCCTCACCGGA 253 ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| Sbjct 175 ACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGACATCCGATGAAACCTCACCGGA 234 Query 254 TCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTC 313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 TCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTC 294 Query 314 GCCCTAGCCTCGCTGACGCCTCCGATATCGGCCGATTCCATTCGCCGGAGTATGTTGACT 373 |||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| | Sbjct 295 GCCCTAACCTCGCTGACGCCTCCGATATCGGCCGGTTTCATTCGCCGGAGTATGTTGATT 354 Query 374 TCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCGCTGCACGAAACCTAAGGC 433 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 355 TCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCTCTTCACGAAACCTAAGGC 414 Query 434 GATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTT 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 GATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTT 474 Query 494 CCGCCGGAGGTTCTATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTA 553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 CCGCCGGAGGTTCTATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTA 534 Query 554 TCAATTGGGGCGGTGGGCTTCACCATGCTAAGAAAAGCGAGGCTTCTGGGTTTTGCTATG 613 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 535 TCAATTGGGGCGGTGGCCTTCACCATGCTAAGAAAAGCGAGGCCTCTGGGTTTTGCTATG 594 Query 614 TAAACGACATCGTGCTAGGGATTCTGGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACA 673 |||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 595 TAAATGATATCGTTTTAGGGATTCTCGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACA 654 Query 674 TAGATATTGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAG 733 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 TAGATATCGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAG 714 Query 734 TTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCAGGAACTGGTCACATAAGAG 793 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 715 TTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCCGGAACTGGTCACATAAGAG 774 Query 794 ATGTTGGCGCTGAAAAAGGGAAATACTATGCTCTAAATGTTCCACTAAACGATGGTATGG 853 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 775 ATGTTGGCGCAGAAAAAGGGAAATACTATGCTCTAAATGTTCCGCTAAACGATGGTATGG 834 Query 854 ACGATGAAAGTTTCCGCAGCTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATC 913 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 ACGATGAACGTTTCCGCAGCTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATC 894 Query 914 AGCCAGAGGCAGTTGTTCTTCAGTGTGGTGCTGACTCCTTAAGTGGTGATCGGTTGGGTT 973 |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| Sbjct 895 AGCCAGAGGCAGTTGTTCTTCAATGTGGGGCTGACTCGTTAAGTGGTGATCGGTTGGGTT 954 Query 974 GCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACG 1033 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 955 GCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACG 1014 Query 1034 TTCCTCTCATGGTGTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCCCGTTGCTGGT 1093 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1015 TTCCTCTCATGGTCTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCTCGTTGCTGGT 1074 Query 1094 GTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCGGACAACAAACTCCCTTACAATGAGT 1153 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1075 GTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCAGACAACAAACTCCCTTACAATGAGT 1134 Query 1154 ATTTTGAGTATTTCGGCCCAGATTATACGCTTCATGTCGACCCAAGTCCTATGGAGAATT 1213 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 1135 ATTTTGAGTATTTCGGCCCAGATTATACGCTTCATGTCGACCCAGGTCCAATGGAGAATT 1194 Query 1214 TAAACACGCCCAAAGATATGGAGAGGATAAGGAACACGTTGCTGGAACAACTTTCGGGAC 1273 |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1195 TAAACACGCCAAAAGATATGGAGAAGATAAGGAACACATTGCTGGAACAACTTTCGGGAC 1254 Query 1274 TAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACG 1333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 TAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACG 1314 Query 1334 AGCCGGAAGATGACATGGAGACAA-GACCAAAACCTCGCATCTGGAGTGGAACTGCGACT 1392 |||||||||| ||||||||| ||| ||||||| |||||||| ||||||||||||| |||| Sbjct 1315 AGCCGGAAGAAGACATGGAG-CAAAGACCAAAGCCTCGCATTTGGAGTGGAACTGTGACT 1373 Query 1393 TATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCATGTCGTGGTGGC 1452 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1374 TATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCAGGTCGTGGTGGC 1433 Query 1453 GCAACTACGGACAGGGACTCTACCGGTGAAGATGAAATGGATGACGATAACCCAGAGCCA 1512 |||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1434 GCAATTATGGACAGGGACTCTACAGGTGAAGATGAAATGGAAGACGATAACCCAGAGCCA 1493 Query 1513 GACGTGAATCCTCCATCGTCTTAAACCAGCTTGATGGTTTGGTGTCTCTTTTGCCATATG 1572 ||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1494 GACGTGAATCCCCCATCGTCTTAAACCAGCTTGATGGTT-GGTGGGTCTTTTGCCATATG 1552 Query 1573 ATAATGTCGGCAGATTTAAGAAACAAGTTAGGGGAATGAATGATTCTTTGATGTTTTTTC 1632 |||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| Sbjct 1553 GTAATGTCGGCAGATTTAAGACACAAGTTAGGGGAATGA-TGATTCTTTCATGTTTTTTC 1611 Query 1633 AGCAACCTTTTGAGTTCTGTGAAAACGCTGCATTGATTAGAACAGTGACAACTGACTAGT 1692 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1612 AGCAACCTTTTGAGTTCTGTGAAAACGCTGCATTGATTAGAACGGTGACAACTGACAAGT 1671 Query 1693 ATTTTGGCCCAAGTTAGAAAATCAGAATATGTGAAAAATGCAAAGAAACTTTTT 1746 |||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1672 ATTTTGGCTCAAGTTAGAAAATCAGAAGATGTGAAAAATGCAAAGAAACTTTTT 1725 > Ahg897670 jgi|Araly1|897670|Al_scaffold_0005_1636 Length=1212 Score = 307 bits (166), Expect = 2e-82 Identities = 511/671 (76%), Gaps = 50/671 (7%) Strand=Plus/Plus Query 461 TCTTCGACGGACTTTTTGATTTTTGCCGTGCTTCCGCCGGAGGTTCTATT-GGTGCTGCC 519 ||||| |||| || || |||| |||||| || || || || |||||| || | || ||| Sbjct 326 TCTTCAACGGCCTCTTCGATTATTGCCGCGCCTCTGCTGGTGGTTCT-TTAAGCGCCGCC 384 Query 520 GTCAAATTAAACAGACAGGACGCTGATATCGCTATCAATTGGGGCGGTGGGCTTCACCAT 579 |||||||| ||| | | ||| || ||||| ||||||||||||| ||||||| | |||| | Sbjct 385 GTCAAATTGAACCGTCGGGAAGCCGATATTGCTATCAATTGGGCCGGTGGGATGCACCGT 444 Query 580 GCTAAG-AAAAGCGAGGCTTCTGGGTTTTGCTAT-GTAAACGACATCGTGCTAGGGATT- 636 || ||| | || |||||||| ||| ||| | || || ||| | ||||| | |||| Sbjct 445 GCCAAGCGTGATCG-TGCTTCTGGCTTTAGCT-TCGTCAATGACGTTGTGCTTGCGATTG 502 Query 637 CTGGAGTTGCTCAAGATGTTT-AAGCGGGTTCTCTACATAGATATT-GATGTCCACCATG 694 | |||||||||||| | ||| ||||| |||||||||||||||||| | | ||| |||| Sbjct 503 C-CGAGTTGCTCAAGGT-TTTCAAGCGAGTTCTCTACATAGATATTGGCT-TCCGTCATG 559 Query 695 GAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAGTTATGACTGTTTCTTTCCACA 754 | |||| |||||||||||| ||||||| || |||||||||||||||||||||||||||| Sbjct 560 GGGATGCAGTGGAAGAAGCATTTTACAATACGGATAGAGTTATGACTGTTTCTTTCCACA 619 Query 755 AATTTGGGGACTTTTTCCCAGGAACTGGTCACATAAGAGATGTTGGCGCTGAAAAAGGGA 814 || | |||| | | || || || | |||| | | | ||| |||| Sbjct 620 CATATACGGACA----CAC-----CTT-TCCCA-A-GAGACGGAGACA--GAA---GGGA 662 Query 815 AATACTATGCTCTAAATGTTCCACTAAACGA-TGGTATGGACGATGAAAGT-TTCCGCAG 872 | ||| ||||||| | ||| |||| || ||| | | ||| ||||| ||| ||| Sbjct 663 GTTG-TATTCTCTAAAAGCACCATTAAA-GAATGGGCTCAAAGATAAAAGTCTTC-GCAA 719 Query 873 CTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATCAGCCAGAGGCAGTTGTTCT 932 |||||| |||||| ||||| | |||| ||| |||| ||||||||||| | |||||||| Sbjct 720 CTTGTTCAGACCTGTTATCAACAAGGCAATGCAAGTTTATCAGCCAGAAGTTGTTGTTCT 779 Query 933 TCAGTGTGGTGCTGACTCCTTAAG-TGGTGATCGGTTGGGTTGC-TTCAACTT-ATCAGT 989 ||||||||||||||| || ||| | ||||||| || | | |||||||| | ||| Sbjct 780 TCAGTGTGGTGCTGATTCATTA-GCTGGTGAT---TT---TA-CATTCAACTTGAA-AGT 830 Query 990 CAAGGGTCACGCTGATTGCCTTCG-GTTCTTAAGATCTTACAACGTTCCTCTCATGGTGT 1048 ||||||||||| || ||| || || || | ||||||||| || |||||||||||||| | Sbjct 831 CAAGGGTCACGGTGCTTGTCT-CGAGTACATAAGATCTTTTAATGTTCCTCTCATGGTCT 889 Query 1049 TGGGTGGTGGAGGGTATACTATTCGAAATGTTGCCCGTTGCTGGTGTTATGAGACTGC-A 1107 |||||||||| || | |||| ||||| ||||||| ||||||||||| |||||||| || | Sbjct 890 TGGGTGGTGGTGGTTCTACTTTTCGACATGTTGCTCGTTGCTGGTGCTATGAGACAGCGA 949 Query 1108 GTTGCTGTTGG 1118 |||||||||| Sbjct 950 -TTGCTGTTGG 959 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65515221400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5