BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G63130.1

Length=1082
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918094 jgi|Araly1|918094|Al_scaffold_0008_2845                    800    0.0  
  Ahg937580 jgi|Araly1|937580|scaffold_501771.1                        261    8e-69


> Ahg918094 jgi|Araly1|918094|Al_scaffold_0008_2845
Length=576

 Score =  800 bits (433),  Expect = 0.0
 Identities = 534/582 (92%), Gaps = 9/582 (2%)
 Strand=Plus/Plus

Query  89   ATGGTAGCCGTTGATTATACCGAGAAGAACAGTGGAAGCAGTCTCAAGTTTCTATGCAGT  148
            ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGGCCGTTGATTATACGGAGAAGAATAGTGGAAGCAGTCTCAAGTTTCTATGCAGT  60

Query  149  TACGGTGGCAGAATCCTCCCTCGCTCCACCGACGGCAAGCTCCGTTACGTCGGAGGTCAC  208
            |||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  61   TACGGTGGTAGAATCTTCCCTCGTTCCACCGATGGCAAGCTCCGTTACGTCGGAGGTCAC  120

Query  209  ACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTTTCTCAGAGCTGATGAAGAAACTCTAT  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTTTCTCAGAGCTGATGAAGAAACTCTAT  180

Query  269  GAATTCTGTGGATACTCCGTTGATTTACGATGTCAATTACCAAACGGAGATCTCGAGACT  328
            |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct  181  GAATTCTGTGGATACTCCGTTGAACTACGATGTCAATTACCAAACGGAGATCTCGAGACT  240

Query  329  CTAATCTCCGTCAAATCAGAAGAAGAACTAGCGGAGATCGTTGAAGAGTACGATCGCATC  388
            ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| 
Sbjct  241  CTAATCTCCGTCAAATCAGAAGAAGAACTAGCGAACATCGTCGAAGAGTACGATCGCATA  300

Query  389  TGCGGAGCCAAGATCCGTGCCGTTCTATCACCTCCGAGATCTTCGCATAAGACCGAATCT  448
            | |||||| |||||| | ||||||||||| |||||||||||||||||||||| ||| || 
Sbjct  301  TCCGGAGCTAAGATCAGAGCCGTTCTATCGCCTCCGAGATCTTCGCATAAGAACGATTCG  360

Query  449  TCGCCGTCTTCAAGCGGTGATCGATCTCCAAAATCGCCGTTCTCCGTCACGCCTTCACCG  508
            ||||||||||||||||| ||||||||||| ||||| || |||||| ||||||||||||||
Sbjct  361  TCGCCGTCTTCAAGCGGCGATCGATCTCCGAAATCTCCATTCTCCATCACGCCTTCACCG  420

Query  509  CCAAATTCTCCGTCGCCGGCGTATGGAAGATATCTACAATCTCGGTATTGTTTACCTTCC  568
            || |||||||||||||||||||| ||| |||||||||||||||||||||||   ||  | 
Sbjct  421  CCGAATTCTCCGTCGCCGGCGTACGGACGATATCTACAATCTCGGTATTGT---CCAGC-  476

Query  569  ACGGATCTTCCTCCGAGAAGATACATTCAGAGAGCGGAAGAATCGCATTGCTGCTATGCG  628
              |||||||  ||| |||||||||| ||| ||| |||||||||| |||||||||||||||
Sbjct  477  --GGATCTTGTTCCTAGAAGATACAATCATAGATCGGAAGAATCTCATTGCTGCTATGCG  534

Query  629  TGTCGTGTACACAA-A--GACTCTAGGCTCGTTTGGCATTGA  667
            |||||||||||||| |  |||||||||||||| |||||||||
Sbjct  535  TGTCGTGTACACAACAAAGACTCTAGGCTCGTATGGCATTGA  576


> Ahg937580 jgi|Araly1|937580|scaffold_501771.1
Length=582

 Score =  261 bits (141),  Expect = 8e-69
 Identities = 239/287 (83%), Gaps = 3/287 (1%)
 Strand=Plus/Plus

Query  123  GAAGCAGTCTCAAGTTTCTATGCAGTTACGGTGGCAGAATCCTCCCTCGCTCCACCGACG  182
            ||| |||||||||||| || ||||||||||||||||||||||||||||| || | ||| |
Sbjct  54   GAA-CAGTCTCAAGTTCCTCTGCAGTTACGGTGGCAGAATCCTCCCTCGTTCTATCGATG  112

Query  183  GCAAGCTCCGTTACGTCGGAGGTCACACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTT  242
            | || |||||||||||||| |||  ||||||||| ||||||||| |||  || |||||||
Sbjct  113  GAAATCTCCGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCAATCTCTT  172

Query  243  TCTCAGAGCTGATGAAGAAACTCTATGAATTCTGTGGATACTCCGTTGATTT-ACGATGT  301
            || ||||  |||||| |||| |  | ||||| ||||| || |||||||| || | | |||
Sbjct  173  TCACAGAATTGATGATGAAATTGGAGGAATTTTGTGGCTATTCCGTTGAATTGAAG-TGT  231

Query  302  CAATTACCAAACGGAGATCTCGAGACTCTAATCTCCGTCAAATCAGAAGAAGAACTAGCG  361
            |||||||||||||||||||| ||||| ||||| |||||||| ||||| || || ||||||
Sbjct  232  CAATTACCAAACGGAGATCTGGAGACACTAATTTCCGTCAAGTCAGATGAGGATCTAGCG  291

Query  362  GAGATCGTTGAAGAGTACGATCGCATCTGCGGAGCCAAGATCCGTGC  408
             | || |||||||| ||||||||  | | ||||| ||||||||||||
Sbjct  292  AATATGGTTGAAGAATACGATCGTGTTTACGGAGGCAAGATCCGTGC  338



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40295923269


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5