BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63130.1
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918094 jgi|Araly1|918094|Al_scaffold_0008_2845 800 0.0
Ahg937580 jgi|Araly1|937580|scaffold_501771.1 261 8e-69
> Ahg918094 jgi|Araly1|918094|Al_scaffold_0008_2845
Length=576
Score = 800 bits (433), Expect = 0.0
Identities = 534/582 (92%), Gaps = 9/582 (2%)
Strand=Plus/Plus
Query 89 ATGGTAGCCGTTGATTATACCGAGAAGAACAGTGGAAGCAGTCTCAAGTTTCTATGCAGT 148
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGCCGTTGATTATACGGAGAAGAATAGTGGAAGCAGTCTCAAGTTTCTATGCAGT 60
Query 149 TACGGTGGCAGAATCCTCCCTCGCTCCACCGACGGCAAGCTCCGTTACGTCGGAGGTCAC 208
|||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 61 TACGGTGGTAGAATCTTCCCTCGTTCCACCGATGGCAAGCTCCGTTACGTCGGAGGTCAC 120
Query 209 ACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTTTCTCAGAGCTGATGAAGAAACTCTAT 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTTTCTCAGAGCTGATGAAGAAACTCTAT 180
Query 269 GAATTCTGTGGATACTCCGTTGATTTACGATGTCAATTACCAAACGGAGATCTCGAGACT 328
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GAATTCTGTGGATACTCCGTTGAACTACGATGTCAATTACCAAACGGAGATCTCGAGACT 240
Query 329 CTAATCTCCGTCAAATCAGAAGAAGAACTAGCGGAGATCGTTGAAGAGTACGATCGCATC 388
||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 241 CTAATCTCCGTCAAATCAGAAGAAGAACTAGCGAACATCGTCGAAGAGTACGATCGCATA 300
Query 389 TGCGGAGCCAAGATCCGTGCCGTTCTATCACCTCCGAGATCTTCGCATAAGACCGAATCT 448
| |||||| |||||| | ||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 301 TCCGGAGCTAAGATCAGAGCCGTTCTATCGCCTCCGAGATCTTCGCATAAGAACGATTCG 360
Query 449 TCGCCGTCTTCAAGCGGTGATCGATCTCCAAAATCGCCGTTCTCCGTCACGCCTTCACCG 508
||||||||||||||||| ||||||||||| ||||| || |||||| ||||||||||||||
Sbjct 361 TCGCCGTCTTCAAGCGGCGATCGATCTCCGAAATCTCCATTCTCCATCACGCCTTCACCG 420
Query 509 CCAAATTCTCCGTCGCCGGCGTATGGAAGATATCTACAATCTCGGTATTGTTTACCTTCC 568
|| |||||||||||||||||||| ||| ||||||||||||||||||||||| || |
Sbjct 421 CCGAATTCTCCGTCGCCGGCGTACGGACGATATCTACAATCTCGGTATTGT---CCAGC- 476
Query 569 ACGGATCTTCCTCCGAGAAGATACATTCAGAGAGCGGAAGAATCGCATTGCTGCTATGCG 628
||||||| ||| |||||||||| ||| ||| |||||||||| |||||||||||||||
Sbjct 477 --GGATCTTGTTCCTAGAAGATACAATCATAGATCGGAAGAATCTCATTGCTGCTATGCG 534
Query 629 TGTCGTGTACACAA-A--GACTCTAGGCTCGTTTGGCATTGA 667
|||||||||||||| | |||||||||||||| |||||||||
Sbjct 535 TGTCGTGTACACAACAAAGACTCTAGGCTCGTATGGCATTGA 576
> Ahg937580 jgi|Araly1|937580|scaffold_501771.1
Length=582
Score = 261 bits (141), Expect = 8e-69
Identities = 239/287 (83%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 123 GAAGCAGTCTCAAGTTTCTATGCAGTTACGGTGGCAGAATCCTCCCTCGCTCCACCGACG 182
||| |||||||||||| || ||||||||||||||||||||||||||||| || | ||| |
Sbjct 54 GAA-CAGTCTCAAGTTCCTCTGCAGTTACGGTGGCAGAATCCTCCCTCGTTCTATCGATG 112
Query 183 GCAAGCTCCGTTACGTCGGAGGTCACACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTT 242
| || |||||||||||||| ||| ||||||||| ||||||||| ||| || |||||||
Sbjct 113 GAAATCTCCGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCAATCTCTT 172
Query 243 TCTCAGAGCTGATGAAGAAACTCTATGAATTCTGTGGATACTCCGTTGATTT-ACGATGT 301
|| |||| |||||| |||| | | ||||| ||||| || |||||||| || | | |||
Sbjct 173 TCACAGAATTGATGATGAAATTGGAGGAATTTTGTGGCTATTCCGTTGAATTGAAG-TGT 231
Query 302 CAATTACCAAACGGAGATCTCGAGACTCTAATCTCCGTCAAATCAGAAGAAGAACTAGCG 361
|||||||||||||||||||| ||||| ||||| |||||||| ||||| || || ||||||
Sbjct 232 CAATTACCAAACGGAGATCTGGAGACACTAATTTCCGTCAAGTCAGATGAGGATCTAGCG 291
Query 362 GAGATCGTTGAAGAGTACGATCGCATCTGCGGAGCCAAGATCCGTGC 408
| || |||||||| |||||||| | | ||||| ||||||||||||
Sbjct 292 AATATGGTTGAAGAATACGATCGTGTTTACGGAGGCAAGATCCGTGC 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40295923269
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5