BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63130.1 Length=1082 Score E Sequences producing significant alignments: (Bits) Value Ahg918094 jgi|Araly1|918094|Al_scaffold_0008_2845 800 0.0 Ahg937580 jgi|Araly1|937580|scaffold_501771.1 261 8e-69 > Ahg918094 jgi|Araly1|918094|Al_scaffold_0008_2845 Length=576 Score = 800 bits (433), Expect = 0.0 Identities = 534/582 (92%), Gaps = 9/582 (2%) Strand=Plus/Plus Query 89 ATGGTAGCCGTTGATTATACCGAGAAGAACAGTGGAAGCAGTCTCAAGTTTCTATGCAGT 148 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGTGGCCGTTGATTATACGGAGAAGAATAGTGGAAGCAGTCTCAAGTTTCTATGCAGT 60 Query 149 TACGGTGGCAGAATCCTCCCTCGCTCCACCGACGGCAAGCTCCGTTACGTCGGAGGTCAC 208 |||||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 61 TACGGTGGTAGAATCTTCCCTCGTTCCACCGATGGCAAGCTCCGTTACGTCGGAGGTCAC 120 Query 209 ACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTTTCTCAGAGCTGATGAAGAAACTCTAT 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTTTCTCAGAGCTGATGAAGAAACTCTAT 180 Query 269 GAATTCTGTGGATACTCCGTTGATTTACGATGTCAATTACCAAACGGAGATCTCGAGACT 328 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 181 GAATTCTGTGGATACTCCGTTGAACTACGATGTCAATTACCAAACGGAGATCTCGAGACT 240 Query 329 CTAATCTCCGTCAAATCAGAAGAAGAACTAGCGGAGATCGTTGAAGAGTACGATCGCATC 388 ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| Sbjct 241 CTAATCTCCGTCAAATCAGAAGAAGAACTAGCGAACATCGTCGAAGAGTACGATCGCATA 300 Query 389 TGCGGAGCCAAGATCCGTGCCGTTCTATCACCTCCGAGATCTTCGCATAAGACCGAATCT 448 | |||||| |||||| | ||||||||||| |||||||||||||||||||||| ||| || Sbjct 301 TCCGGAGCTAAGATCAGAGCCGTTCTATCGCCTCCGAGATCTTCGCATAAGAACGATTCG 360 Query 449 TCGCCGTCTTCAAGCGGTGATCGATCTCCAAAATCGCCGTTCTCCGTCACGCCTTCACCG 508 ||||||||||||||||| ||||||||||| ||||| || |||||| |||||||||||||| Sbjct 361 TCGCCGTCTTCAAGCGGCGATCGATCTCCGAAATCTCCATTCTCCATCACGCCTTCACCG 420 Query 509 CCAAATTCTCCGTCGCCGGCGTATGGAAGATATCTACAATCTCGGTATTGTTTACCTTCC 568 || |||||||||||||||||||| ||| ||||||||||||||||||||||| || | Sbjct 421 CCGAATTCTCCGTCGCCGGCGTACGGACGATATCTACAATCTCGGTATTGT---CCAGC- 476 Query 569 ACGGATCTTCCTCCGAGAAGATACATTCAGAGAGCGGAAGAATCGCATTGCTGCTATGCG 628 ||||||| ||| |||||||||| ||| ||| |||||||||| ||||||||||||||| Sbjct 477 --GGATCTTGTTCCTAGAAGATACAATCATAGATCGGAAGAATCTCATTGCTGCTATGCG 534 Query 629 TGTCGTGTACACAA-A--GACTCTAGGCTCGTTTGGCATTGA 667 |||||||||||||| | |||||||||||||| ||||||||| Sbjct 535 TGTCGTGTACACAACAAAGACTCTAGGCTCGTATGGCATTGA 576 > Ahg937580 jgi|Araly1|937580|scaffold_501771.1 Length=582 Score = 261 bits (141), Expect = 8e-69 Identities = 239/287 (83%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 123 GAAGCAGTCTCAAGTTTCTATGCAGTTACGGTGGCAGAATCCTCCCTCGCTCCACCGACG 182 ||| |||||||||||| || ||||||||||||||||||||||||||||| || | ||| | Sbjct 54 GAA-CAGTCTCAAGTTCCTCTGCAGTTACGGTGGCAGAATCCTCCCTCGTTCTATCGATG 112 Query 183 GCAAGCTCCGTTACGTCGGAGGTCACACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTT 242 | || |||||||||||||| ||| ||||||||| ||||||||| ||| || ||||||| Sbjct 113 GAAATCTCCGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCAATCTCTT 172 Query 243 TCTCAGAGCTGATGAAGAAACTCTATGAATTCTGTGGATACTCCGTTGATTT-ACGATGT 301 || |||| |||||| |||| | | ||||| ||||| || |||||||| || | | ||| Sbjct 173 TCACAGAATTGATGATGAAATTGGAGGAATTTTGTGGCTATTCCGTTGAATTGAAG-TGT 231 Query 302 CAATTACCAAACGGAGATCTCGAGACTCTAATCTCCGTCAAATCAGAAGAAGAACTAGCG 361 |||||||||||||||||||| ||||| ||||| |||||||| ||||| || || |||||| Sbjct 232 CAATTACCAAACGGAGATCTGGAGACACTAATTTCCGTCAAGTCAGATGAGGATCTAGCG 291 Query 362 GAGATCGTTGAAGAGTACGATCGCATCTGCGGAGCCAAGATCCGTGC 408 | || |||||||| |||||||| | | ||||| |||||||||||| Sbjct 292 AATATGGTTGAAGAATACGATCGTGTTTACGGAGGCAAGATCCGTGC 338 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40295923269 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5