BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63180.1
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496502 jgi|Araly1|496502|fgenesh2_kg.8__2318__AT5G63180.1 2226 0.0
> Ahg496502 jgi|Araly1|496502|fgenesh2_kg.8__2318__AT5G63180.1
Length=1469
Score = 2226 bits (1205), Expect = 0.0
Identities = 1386/1472 (94%), Gaps = 18/1472 (1%)
Strand=Plus/Plus
Query 1 ACTCATATGTTTCGTCCCAATTCT-CTTTTAATACCTTCAAAT-TTATCAACAACAAAAA 58
||||||||||||| ||| |||||| || || ||||||| |||| ||||||| ||||||||
Sbjct 1 ACTCATATGTTTCTTCCTAATTCTCCTATT-ATACCTT-AAATATTATCAAAAACAAAAA 58
Query 59 GCCAAAGAAACACAATGCTAAATTCTTCATATCTATCCTTCGCACTTATCTTTTTCTGCT 118
||| || | ||||||||||||||||| | |||||||||||| |||| |||||||||||||
Sbjct 59 GCCCAATAGACACAATGCTAAATTCTCCGTATCTATCCTTCACACTAATCTTTTTCTGCT 118
Query 119 GCATTTTGTTCTCCGCTCTCGCTTCGTCTTTGCCCGTTTCCGACCCTGAGCTTGTTGTCG 178
||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 119 GCATTTTATTCTCCGCTCTCACTTCGTCTTTGCCCGTTTCCGATCCTGAGCTCGTTGTCG 178
Query 179 AGGAAGTACACAGAAAAATAAACGAGTCCATATCAAGAAGGAAGCTAGGGTTCTTCTCGT 238
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 179 AGGAAGTACACAGGAAAATAAACGAGTCTATATCAAGAAGGAAGCTAGGTTTCTTCTCGT 238
Query 239 GCGGGAGTGGTAATCCAATCGATGATTGTTGGCGATGCGACAAGGATTGGGAGAAAAACC 298
|||||| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 239 GCGGGACTGGTAATCCAATAGATGATTGTTGGCGATGCGAGAAGGATTGGGAGAACAACC 298
Query 299 GAAAACGGTTAGCAGACTGTGGTATCGGTTTTGGCAAGAACGCTATTGGCGGTCGTGATG 358
|||||||| |||| || || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 299 GAAAACGGCTAGCCGATTGCGGTATCGGTTTTGGCAAAAACGCTATTGGTGGTCGTGATG 358
Query 359 GTGAAATCTATGTGGTCACGGATCCAGGAAACGATGATCCAGTAAACCCTAGACCGGGAA 418
|||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||| ||||
Sbjct 359 GTGAAATCTACGTGGTCACGGATCCAGGAAACGACGATCCAGTAAATCCTAAACCCGGAA 418
Query 419 CACTAAGATACGCAGTCATTCAAGATGAACCGCTATGGATCATTTTTAAGCGAGACATGA 478
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CACTAAGATACGCGGTAATTCAAGATGAACCGCTATGGATCATTTTTAAGCGAGACATGA 478
Query 479 CGATCCAACTAAAAGAAGAACTCATCATGAATTCTTTCAAAACCCTAGACGGACGAGGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGATCCAACTAAAAGAAGAACTCATCATGAATTCTTTCAAAACCCTAGACGGACGAGGAG 538
Query 539 CCTCCGTACACATCTCCGGTGGGCCATGTATAACCATACAATATGTAACCAACATCATCA 598
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CATCCGTACATATCTCCGGTGGGCCATGTATAACCATACAATATGTAACCAACATCATCA 598
Query 599 TCCATGGTTTACACATACATGACTGCAAGCAAGGTGGGAATACTTACGTACGTGACTCAC 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 TCCATGGTTTACACATACATGACTGCAAGCAAGGTGGAAATACTTACGTACGTGACTCAC 658
Query 659 CAGAGCATTACGGATATAGAACGGTATCCGACGGTGACGGTGTGTCAATATTCGGTGGAA 718
|||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct 659 CAGAGCATTACGGATATAGAACGGTATCGGACGGTGACGGTGTGTCCATCTTCGGTGGGA 718
Query 719 GCCACGTGTGGGTTGATCATTGCTCGCTATCGAATTGCAACGACGGGTTAATTGATGCAA 778
| |||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| |
Sbjct 719 GTCACGTGTGGGTTGATCATTGCTCGCTCTCGAATTGCAACGATGGGTTGATCGATGCGA 778
Query 779 TTCGTGGATCAACGGCTATAACGATCTCGAACAATTATTTGACGCATCATAATAAGGTTA 838
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 TTCGTGGATCAACGGCTATAACGATCTCTAACAATTATTTGACGCATCATAATAAGGTTA 838
Query 839 TGTTATTGGGACACAGTGATACGTACGAACAAGACAAGAACATGCAAGTCACTATCGCTT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGTTATTGGGACACAGTGATACGTACGAACAAGACAAGAACATGCAAGTCACTATCGCTT 898
Query 899 TTAACCATTTTGGAGAAGGCCTCGTCCAAAGAATGCCAAGGTGTAGACATGGATATTTCC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTAACCATTTTGGAGAAGGCCTCGTCCAAAGAATGCCAAGGTGTAGACATGGATATTTCC 958
Query 959 ATGTGGTGAACAATGACTATACACATTGGGAAATGTATGCAATTGGAGGAAGTGCTAATC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGTGGTGAACAATGACTATACACATTGGGAAATGTATGCAATTGGAGGAAGTGCTAATC 1018
Query 1019 CTACCATCAACTCTCAAGGCAACCGTTTTCTTGCTCCTGATGACTCATCTAGCAAAGAGG 1078
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 CTACAATCAACTCTCAAGGCAACCGTTTTCTTGCCCCTGATGACTCATCTAGCAAAGAGG 1078
Query 1079 TAACAAAGCACGAGGATGCGCCGGAAGACGAATGGAGAAATTGGAATTGGAGATCTGAAG 1138
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 1079 TAACAAAGCACGAGGATGCGCCCGAAAACGAATGGAGAAATTGGAATTGGAGATCCGAAG 1138
Query 1139 GAGATCTACTGCTTAATGGTGCATTCTTCACCTATTCTGGTGCTGGACCAGCTAAATCAT 1198
|||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1139 GAGATCTAATGCTTAATGGTGCATTCTTCACCTATTCTGGCGCTGGACCAACTAAATCAT 1198
Query 1199 CAAGCTATTCAAAAGCTTCGAGTCTAGCCGCGAGACCGTCCTCTCATGTTGGTGAGATAA 1258
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAAGCTATTCAAAAGCTTCGAGCCTAGCCGCGAGACCGTCCTCTCATGTTGGTGAGATAA 1258
Query 1259 CTATAGCCTCGGGTGCACTCAGCTGCAAAAGGGGTTCTCATTGTTGA---T-CATAGCCC 1314
||||||| ||||||||||||||||||||||||||||| ||||||||| | |||| |||
Sbjct 1259 CTATAGCTTCGGGTGCACTCAGCTGCAAAAGGGGTTCCCATTGTTGACCATGCATACCCC 1318
Query 1315 ATCAACGTGTATGTGTGCGCATGTGTGTATATAC--A--TATAATATAATGAAACTAGCA 1370
| |||||||||||||| ||||||||||||||||| | |||||||||||||||| ||||
Sbjct 1319 ACCAACGTGTATGTGT-CGCATGTGTGTATATACGTACGTATAATATAATGAAACCAGCA 1377
Query 1371 CTTGAAAGCTAAT---GTAATAATCTTGATGGGAAAGTGAAGAAGAGTTTATTACA--TT 1425
||||||||||||| |||||||||||| ||| |||||||||||| |||||||||| ||
Sbjct 1378 CTTGAAAGCTAATTATGTAATAATCTTGGTGGCAAAGTGAAGAAGTGTTTATTACACATT 1437
Query 1426 TTATCTTGTCGTTGTGTCGGCAGAGTTATTTC 1457
|||||| | |||||||||||||||||||||||
Sbjct 1438 TTATCTGGCCGTTGTGTCGGCAGAGTTATTTC 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54507140595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5