BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63190.1 Length=2603 Score E Sequences producing significant alignments: (Bits) Value Ahg496503 jgi|Araly1|496503|fgenesh2_kg.8__2319__AT5G63190.2 3735 0.0 > Ahg496503 jgi|Araly1|496503|fgenesh2_kg.8__2319__AT5G63190.2 Length=2501 Score = 3735 bits (2022), Expect = 0.0 Identities = 2306/2440 (95%), Gaps = 32/2440 (1%) Strand=Plus/Plus Query 141 GTTTTTCTCCGGTGCTGGAGATCCGATTCCTTATCTTTTCTGTCTTGGCTCGAGATCCGA 200 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 79 GTTTTT-TCCGGTGCTGGAGATCCGATTCCTTATCTTTCCTGTCTTGGCTCGAGATCCGA 137 Query 201 GCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAATTTG-ATTCCTGCGATCAC 259 ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| Sbjct 138 GCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAA-TTGTATTCTTGCGATCAC 196 Query 260 ----A-GATGGCATCGGGTGAGGGAATTTTGACGGATGGACAGTGGAAAAAGCTTGAAAT 314 | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 197 AGGTATGATGGCATCGGGTGAGGGAATTTTGACTGATGGACAGTGGAAAAAGCTTGAAAT 256 Query 315 AGCAACTCATAATTCTGGAAGTTTGTCATCATCGCCTAAATCTCATACTCTCTTTGCTGA 374 ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 257 AGCAACTCAGAATTCTGGAAGTTTGTCATCATCGCCCAAATCTCATACTCTGTTTGCTGA 316 Query 375 TCTGAACATTAAGTCTCCCACTGGTGGCAAAGGACCAGTTGCTGGGATTCCTAATAGGCA 434 | ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| Sbjct 317 TTTGAACATTAAGTCTCCCACTGGTGGCAAAGGACCAGTAGCTGGGTTTCCAAATAGGCA 376 Query 435 TGTGCGACGTACTCACTCAGGGAAGCATATTCGTGTTAAGAAGGAGGGTGCTGGTGGCAA 494 ||| ||||| ||||| || ||||||||||| ||||| |||||||| ||||||||||| || Sbjct 377 TGTACGACGGACTCATTCTGGGAAGCATATCCGTGTAAAGAAGGATGGTGCTGGTGGAAA 436 Query 495 AGGAACTTGGGGAAAGCTTCTTGACACTGATGATGGTGACTCCTGTATTGATAAGAATGA 554 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 437 AGGAACTTGGGGAAAGCTTCTTGACACTGATGAGGGTGACTCCTGTATTGACAAGAATGA 496 Query 555 TCCCAATTACGATAGTGGAGAGGACGCATATGATGGACTTGTTGATTCACCGGTATCAGA 614 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 497 TCCCAATTACGATAGCGGAGAGGACGCATATGATGGACTTGTTGATTCACCTGTATCAGA 556 Query 615 CCCGTTGAATGATTACAAAAAGTCAGTAGTTTCCATCATTGACGAATACTTTAGCACCGG 674 ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||||| Sbjct 557 CCCGTTGGATGATTACAAAAAGGCTGTAGTTTCCATCATTGAGGAATACTTTAGCACCGG 616 Query 675 GGATGTGAAAGTGGCGGCATCTGACCTCAGGGAACTTGGTTCAAGCGAATATCATCCTTA 734 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 617 GGATGTGAAAGTGGCGGCATCTGACCTCAGGGAACTTGGTTCAAGTGAATATCATCCTTA 676 Query 735 CTTCACCAAGCGACTTGTTTCTATGGCCATGGACAGACACGATAAGGAGAAGGAAATGGC 794 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 677 CTTCACCAAGCGACTTGTTTCTATGGCTATGGACAGGCACGATAAGGAGAAGGAAATGGC 736 Query 795 TTCAGTGCTACTCTCTGCATTGTATGCTGATGTTATTTTACCTGATCAAATTAGGGATGG 854 ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 737 TTCGGTGCTACTCTCTGCATTGTATGCGGATGTCATTTTACCTGATCAAATTAGGGATGG 796 Query 855 ATTTATAAGACTTCTCAGATCTGTTGATGACCTTGCGGTGGACATCCTTGATGCTGTTAA 914 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 797 ATTTATTAGACTTCTCAGATCTGTTGATGACCTTGCTGTGGACATCCTTGATGCTGTTAA 856 Query 915 TGTCCTTGCATTGTTTATTGCACGGGCCATCGTTGACGAAATTCTCCCTCCGGTTTTTCT 974 |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || Sbjct 857 TGTCCTTGCATTGTTTATTGCACGGGCCATCGTTGACGAAATTCTCCCCCCGATTTTCCT 916 Query 975 GGTTAGATCTAAGAAGATTCTTCCAGAATCTTGCAAAGGGTTTCAGGTTATTGTAACTGC 1034 || ||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| Sbjct 917 GGCTAGATCTAAGAAGATACTTCCAGAATCTTCCAAAGGGTTTCAGGTAATTGTAACTGC 976 Query 1035 AGAAAAGAGCTATCTCTCAGCTCCTCACCATGCAGAACTAGTGGAGAAGAAATGGGGAGG 1094 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 977 AGAAAAGAGCTATCTCTCAGCTCCTCACCATGCAGAATTAGTGGAGAAGAAATGGGGAGG 1036 Query 1095 TAGTACTCACACTACAGTAGAAGAAACGAAGAAAAAGATATCTGAAATCTTGAAGGAATA 1154 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1037 TAGCACTCACACTACAGTAGAAGAAACAAAGAAAAAGATATCTGAAATCTTGAAGGAATA 1096 Query 1155 CGTGGAAAACGGAGACACTTACGAAGCTTGTAGATGCATCAGGGAATTAGGTGTCTCGTT 1214 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1097 TGTGGAAAACGGAGACACTTACGAAGCTTGTAGATGCATCAGGGAATTAGGTGTCTCGTT 1156 Query 1215 TTTCCATCATGAGGTTGTGAAGAGGGCTTTGGTTCTGGCGATGGATTCTCCAACCGCTGA 1274 ||||||||| ||||| ||||||||||||||||||||||| ||||| |||| |||| |||| Sbjct 1157 TTTCCATCACGAGGTCGTGAAGAGGGCTTTGGTTCTGGCTATGGAATCTCAAACCTCTGA 1216 Query 1275 GTCACTTGTACTAAAGCTGTTGAAGGAAACTGCTGAAGAAGGACTGATCAGTTCGAGTCA 1334 | ||||| |||||||| ||||||| ||| ||||||||||||| ||||||||||| ||||| Sbjct 1217 GCCACTTATACTAAAGTTGTTGAACGAAGCTGCTGAAGAAGGTCTGATCAGTTCAAGTCA 1276 Query 1335 AATGGTGAAGGGATTCTTCCGAGTAGCAGAGAGTCTCGATGACCTTGCTCTAGATATCCC 1394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1277 AATGGTGAAGGGATTCTTCCGAGTAGCAGAGAGTCTCGATGACCTTGCTCTAGATATCCC 1336 Query 1395 ATCTGCCAAAAAGCTGTTTGATTCGATAGTTCCAAAGGCTATTTCTGGAGGCTGGCTCGA 1454 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1337 ATCGGCCAAAAAGCTGTTTGATTCGATAGTTCCAAAGGCTATCTCTGGAGGCTGGCTCGA 1396 Query 1455 TGATTCATTTAAGATAACCTCTGATCAAGATGGAGAAAAATCGAGTCAAGACGGAAAGCT 1514 ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1397 TGATTCATTTAAGGTTACCTCTGATCAAGATGGAGGGAAATCGAGTCAAGACGGAAAGCT 1456 Query 1515 AAGACAGTACAAGAAGGATACAGTGAACATAATTCAGGAATATTTCTTATCAGATGACAT 1574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1457 AAGACAGTACAAGAAGGATACAGTGAACATAATTCAGGAATATTTCTTATCAGATGACAT 1516 Query 1575 TCCTGAGCTAATCCGCAGTCTTCAAGATTTAGGGGCACCTGAATATAACCCGGTGTTTCT 1634 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1517 TCCTGAGCTAATCCGCAGTCTTCAAGATTTAGGGACACCTGAATATAACCCGGTATTTCT 1576 Query 1635 GAAGAGGCTCATAACTCTTGCTCTAGACAGGAAAAACAGAGAAAAGGAAATGGCTTCGGT 1694 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1577 GAAGAGGCTCATAACTCTTGCTCTAGATAGGAAAAACAGAGAAAAGGAAATGGCTTCGGT 1636 Query 1695 TCTTCTTTCTGCTCTTCACATGGAGCTATTCTCAACTGAAGATTTCATAAACGGTTTCAT 1754 ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||| Sbjct 1637 TCTTCTTTCTGCTCTACACATGGAGTTATTCTCAACCGAAGATTTCATAAACGGCTTCAT 1696 Query 1755 TATGCTCCTGGAATCGGCAGAAGACACAGCTTTAGATATCATGGACGCATCAAACGAACT 1814 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1697 TATGCTCCTGGAATCCGCAGAAGACACAGCTTTAGACATCATGGACGCATCAAACGAACT 1756 Query 1815 TGCTCTGTTTTTAGCTAGAGCTGTGATTGACGACGTCTTAGCTCCACTTAACCTTGAAGA 1874 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1757 TGCTCTGTTTTTAGCTAGAGCTGTGATTGACGACGTTTTAGCTCCACTTAACCTTGAAGA 1816 Query 1875 TATCTCAACCAAGCTGCCTCCAAAATCAACCGGAACCGAAACAGTCCGCTCAGCCAGGTC 1934 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1817 GATCTCAACAAAGCTACCTCCAAAATCAACCGGAACCGAAACAGTCCGCTCAGCCAGGTC 1876 Query 1935 TCTTATCTCCGCCAGACACGCAGGAGAGAGACTCCTAAGAAGCTGGGGAGGTGGAACCGG 1994 ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 1877 TCTTATCTCTGCCAGACACGCAGGAGAGAGACTCCTGAGAAGCTGGGGCGGTGGAACAGG 1936 Query 1995 CTGGATAGTGGAAGATGCAAAGGACAAAATCTCGAAACTCCTAGAAGAATACGAAACAGG 2054 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1937 CTGGATAGTGGAAGATGCAAAGGACAAAATCTCGAAACTTTTAGAAGAATACGAAACAGG 1996 Query 2055 AGGAGTAACATCAGAAGCTTGTCAATGTATCCGCGATCTAGGGATGCCTTTTTTCAACCA 2114 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1997 AGGAGTAACATCAGAAGCTTGTCAATGTATCCGCGATCTAGGGATGCCGTTTTTCAACCA 2056 Query 2115 CGAAGTAGTGAAGAAAGCTTTGGTGATGGCAATGGAGAAGCAGAATGATCGGTTACTGAA 2174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2057 CGAAGTAGTGAAGAAAGCTTTGGTGATGGCAATGGAGAAGCAGAATGATCGGTTACTGAA 2116 Query 2175 TCTGCTTGAGGAGTGTTTTGGTGAAGGATTGATTACAACTAACCAAATGACGAAAGGGTT 2234 ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 2117 TCTACTTGAGGAGTGTTTTGGTGAAGGGTTGATTACGACTAACCAAATGACGAAAGGGTT 2176 Query 2235 TGGTCGTGTTAACGACAGCCTCGATGACTTGTCGCTTGATATACCGAACGCGAAAGAGAA 2294 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2177 TGGTCGCGTTAAAGACAGCCTCGATGACTTGTCGCTTGATATACCGAACGCGAAAGAGAA 2236 Query 2295 GTTTGAGCTGTATGCTAGTCATGCCATGGACAATGGTTGGATCCTTCCCGAGTTTGGGAT 2354 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2237 GTTTGAGTTGTATGCTAGTCATGCCATGGACAATGGTTGGATCCTTCCTGAGTTTGGGAT 2296 Query 2355 TTCTGCAACTCAGTGATTAGTGGTTCTCTTATCAGTTTCTTGTGTTTGTG----CTTACG 2410 |||||| |||||||||| | || |||||||||||||||||| |||||||| |||||| Sbjct 2297 TTCTGCGACTCAGTGATGACTGATTCTCTTATCAGTTTCTTATGTTTGTGTAAGCTTACG 2356 Query 2411 ATACTTTCCTCACTATCTACATATATGTATGGATTCAGTTAGTAGATAAACATGAGATGT 2470 || |||||||||| |||| ||||| || || | | | |||||||||||||||| Sbjct 2357 ATGGTTTCCTCACTTTCTA--TATAT--AT--AT--A-T--G--GATAAACATGAGATGT 2403 Query 2471 TTATA-TGTTCATGTGTTTCTG-TCTGGTTG-TT-GTGTTTTGTCTTTGTACTGATATCT 2526 ||||| | |||||||||||| | ||| ||| || ||||||||||||||||||||||||| Sbjct 2404 TTATAAT-TTCATGTGTTTC-GCTCTTGTTTATTTGTGTTTTGTCTTTGTACTGATATCT 2461 Query 2527 TTTAGTGTGTTCTAATTT-CTGATGGATTTTTGTTACATT 2565 |||||||||||||||||| |||||||||||| |||||||| Sbjct 2462 TTTAGTGTGTTCTAATTTTCTGATGGATTTTCGTTACATT 2501 Score = 137 bits (74), Expect = 3e-31 Identities = 79/81 (98%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 20 TTTATTGGCGATCCTCATCCATTTCCTCTCTCGTCGTTGTCTGGGAATCGGTGACTTTT- 78 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTT-TTGGCGATCCTCATCCATTTCCTCTCTCGTCGTTGTCTGGGAATCGGTGACTTTTT 59 Query 79 GAATCTTTGCGACTCTCTTGT 99 ||||||||||||||||||||| Sbjct 60 GAATCTTTGCGACTCTCTTGT 80 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98158561365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5