BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63290.1
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496512 jgi|Araly1|496512|fgenesh2_kg.8__2328__AT5G63290.1 2427 0.0
Ahg496511 jgi|Araly1|496511|fgenesh2_kg.8__2327__AT5G63280.1 65.8 1e-09
> Ahg496512 jgi|Araly1|496512|fgenesh2_kg.8__2328__AT5G63290.1
Length=1571
Score = 2427 bits (1314), Expect = 0.0
Identities = 1490/1575 (95%), Gaps = 12/1575 (1%)
Strand=Plus/Plus
Query 13 TTTTATTTGGTAATTATGCTGAAAACAACGATTTCTCCAATTTTCTCATCGTTTACAGGT 72
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 TTTTTTTTGG-AATTATGCTGAAAACAACGATTTCTCCAATTTTCTCATCGTTTACATGT 60
Query 73 AAACCCAAGTGCTCATCGAAGTTGTTTTTTCGAGCTTTTAGTAAGGTTGTTCTACAAGAT 132
||||||||| || |||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 61 AAACCCAAG-ACT--TCGAGGTTGATTTTTCGAGCTTTTAGTAAGGTTGTTCTTCAAGAT 117
Query 133 ACTCCACCAAGTGCTCGACGAAATGCGTCAACCAATCTTACTACGTTACACAAAGGTCCA 192
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 118 ACTCCACCAAGTGCTCGACGAAATGCGTCAACCAATCTGACTACGTTACACCAAGGTCCA 177
Query 193 CCAACCTCAGCCTACGTTCATCTTCCGTTTTGTCGCAAACGCTGTCATTATTGTGACTTT 252
|||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 178 CCAACCTCGGCTTACGTTCATCTTCCGTTTTGTCGCAAACGCTGCCATTATTGCGACTTC 237
Query 253 CCTATCTTAGCTCTAGGCATGTCTTCTTCTTC---AGCCAGACCGTCTAATGTCTACGAG 309
|| |||||||||||||||| |||||||||||| | |||| ||||||||||||||||||
Sbjct 238 CCAATCTTAGCTCTAGGCACGTCTTCTTCTTCTTTAACCAGTCCGTCTAATGTCTACGAG 297
Query 310 GAAGGAAAAGAAGATGACCCGA-GAATCACGAACTATGTGAATTTGCTTGTTAGAGAGAT 368
||||||||||||||||| || | | ||||| |||||||||||||||||||||||||||||
Sbjct 298 GAAGGAAAAGAAGATGATCC-ACGTATCACAAACTATGTGAATTTGCTTGTTAGAGAGAT 356
Query 369 AAAAGCGACAAGGACGGATTTTGATACGAACCCGAATCTAGAAACGGTGTTTTTCGGTGG 428
| |||||||||| ||||||| |||||||||||||||||| || |||||||||||||| ||
Sbjct 357 ACAAGCGACAAGAACGGATTATGATACGAACCCGAATCTCGAGACGGTGTTTTTCGGGGG 416
Query 429 TGGGACGCCTTCTCTTGTTCCTCCGAAGCTTGTTTCTTTGATTCTGGAAACATTGAGTTT 488
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 TGGGACGCCTTCTCTTGTTCCTCCAAAGCTTGTTTCTTTGATTCTGGAAACATTGAGTTT 476
Query 489 GAATTTCGGGCTGAGTCCAGATGCTGAGATATCAATGGAGATGGATCCAGGCACGTTTGA 548
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAATTTCGGGTTGAGTCCTGATGCTGAGATATCAATGGAGATGGATCCAGGCACGTTTGA 536
Query 549 TGGTCAGAAGCTGAAGGATTTGATGAAATTGGGAGTTAACAGAGTGTCTTTAGGAGTTCA 608
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 TGGTCAGAAACTGAAGGAATTGATGAAATTGGGAGTGAACAGAGTGTCTTTAGGAGTTCA 596
Query 609 AGCTTTTCAAGATGAGCTTTTGAAAGCTTGTGGAAGAGCTCATGGTGTCTCTCAAGTGTA 668
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 AGCATTTCAAGATGAGCTTTTGAAAGCTTGTGGAAGAGCTCATGGTGTTTCTCAAGTGTA 656
Query 669 TGAAGCAATAGAGTTTGTTAAAGAATGTGGAGTTGAGAATTGGAGTATGGATCTTATTTC 728
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 657 TGAAGCAATAGAGTTTGTTAAAGATTGTGGAGTTGAGAATTGGAGTATGGATCTTATATC 716
Query 729 TTCTCTGCCTCACCAGACTTTGGAGATGTGGGAAGAGAGTTTGAGATTAGCTATCGAATC 788
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTCTCTGCCTCACCAGACATTGGAGATGTGGGAAGAGAGTTTGAGATTAGCTATCGAATC 776
Query 789 ACAGCCCAATCATGTTTCTGTATATGATCTGCAAGTCGAACAAGGCACAAAGTTTGGAAA 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACAGCCCAATCATGTTTCTGTATATGATCTGCAAGTCGAACAAGGCACAAAGTTTGGAAA 836
Query 849 TTTGTACACTCCAGGACAGTCCCCTCTTCCTTCAGAAACACAGTCTGCAGAGTTTTATAA 908
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 CTTGTACACTCCAGGACAATCCCCTCTTCCTTCAGAAACACAATCTGCAGAGTTTTATAA 896
Query 909 AACAGCATCATCGATGCTCCGTGGTGCAGGTTATGAACATTATGAAGTCAGCAGTTACTC 968
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 897 AACAGCATCATCAATGCTCCGTGGAGCAGGTTATGAGCATTATGAAGTCAGCAGTTACTC 956
Query 969 GAGAGACGGTTTCAAGTGCAAACACAACTTGATATACTGGAAGAACAAGCCATTCTATGC 1028
|| ||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 957 GAAAGATGGGTTCAAGTGCAAACACAACTTGATATACTGGAAGAACAAGCCATTTTATGC 1016
Query 1029 TTTCGGTTTAGGTTCAGCGAGTTATGTTGGAGGGTTGAGGTTTTCAAGGCCAAGGAGGCT 1088
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 TTTCGGTTTAGGTTCGGCGAGTTATGTTGGAGGGTTGAGGTTTTCAAGGCCAAGAAGGCT 1076
Query 1089 AAAGGAATACACAAACTATGTCGCTGACTTGGAGAATGGCGCAGCAAACTGGTGTGGAAA 1148
||||||||||||||||| ||||| ||||||||||||||| || |||| |||||||||||
Sbjct 1077 TAAGGAATACACAAACTACGTCGCCGACTTGGAGAATGGCACATCAAATTGGTGTGGAAA 1136
Query 1149 TGGTGATGTTGATCTTAAGGATGTTGCAACAGACATCTTAATGCTATCTTTCAGAACATC 1208
||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 1137 CGGTGATGTTGATCTTAAGGATGTCGCAACAGACATCCTAATGTTATCTTTCAGAACATC 1196
Query 1209 TAAAGGGCTTGAACTTAAGGAGTTTGGAGAAGCTTTTGGCAGTGAGGTAGTGAAATCAAT 1268
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1197 AAAAGGGCTTGAGCTTAAGGAGTTTGGAGAAGCTTTTGGCAGCGAGGTAGTGAAATCGAT 1256
Query 1269 CTGTAAAGTTTATGAGCCTTATGTGGAGAGTGGGCACATTGTTTGTTTGGATGATATGAG 1328
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CTGTAAAGTATATGAGCCTTATGTGGAGAGTGGGCACATTGTTTGTTTGGATGATATGAG 1316
Query 1329 AAGCGAAGTGATGATTGATGAATTCAAAACCTTAGTTGCAAATGATGAAGTGAAGATTGA 1388
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AAGCGAAGTGATGAGTGATGAATTCAAAACCTTAGTTGCAAATGATGAAGTGAAGATTGA 1376
Query 1389 GGATCATGTGAGGTACCTTAGACTGAAAGATCCAGATGGTTTTCTCCTCTCTAATGAGTT 1448
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1377 GGATCATGTGAGGTACCTTAGACTGAAAGATCCAGATGGTTTCCTCCTCTCTAATGAGCT 1436
Query 1449 GATATCTCTATCGTTTGGCGTGGTAGCTCCTTAAACCTTAAAGCTACTAACAAGAAAGAT 1508
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1437 GATATCTCTAGCGTTTGGCGTGGTAGCTCCTTAAACCTTAAAGCTACTAACAAAAAAGGT 1496
Query 1509 TGTTTT-ATAC-TC-TTACTGTTATAGATTGTGTTTCAACCTTGATGTTATCATTGATAT 1565
|||||| |||| || |||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 1497 TGTTTTTATACATCCTTACTGTTATAGATTGTGTTTCAAACTGGATATTATCATTGATAT 1556
Query 1566 GTATGAAGATTCGAT 1580
|||||||||||||||
Sbjct 1557 GTATGAAGATTCGAT 1571
> Ahg496511 jgi|Araly1|496511|fgenesh2_kg.8__2327__AT5G63280.1
Length=1149
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 1549 GATGTTATCATTGATATGTATGAAGATTCGATAAAATT 1586
||| ||||||||||||||||||||||||||||||||||
Sbjct 1147 GATATTATCATTGATATGTATGAAGATTCGATAAAATT 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59420782200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5