BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63310.1
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496515 jgi|Araly1|496515|fgenesh2_kg.8__2331__AT5G63310.1 1099 0.0
> Ahg496515 jgi|Araly1|496515|fgenesh2_kg.8__2331__AT5G63310.1
Length=783
Score = 1099 bits (595), Expect = 0.0
Identities = 690/735 (94%), Gaps = 9/735 (1%)
Strand=Plus/Plus
Query 1 GAAGCTAAGACAAAGCGCAGAAAATGGTGGGAGCGACTGTAGTTAGTAAATGGACTCCCC 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1 GAAGCTAAGACAAAGCGCAGAAAATGGTGGGAGCGACTGTGGTTAGTAAATGGACT---C 57
Query 61 TATGTGTGGCTTCGCCGCCGG-AGAGAAACTCGGCAAGTCTCAATCCACACTGTTCTCCA 119
| ||||| |||||||| ||| | ||||||||| ||||||||||||||||||| |||||
Sbjct 58 TCTGTGTTACTTCGCCGTCGGTA-AGAAACTCGACAAGTCTCAATCCACACTGCTCTCCG 116
Query 120 GCCAGGGTTAATTTTA-GAACAGCGTTGGCCGCATTTCGTCCTCAGTTCCGTCTTTTCTC 178
||||| ||||| || | |||| |||||||||||||||||||||||||||||| |||||
Sbjct 117 GCCAGTGTTAA-CCTACGCACAGAGTTGGCCGCATTTCGTCCTCAGTTCCGTCTCTTCTC 175
Query 179 TCGC-AATTCCGCGTCTCGCCGCCGTCTTCGCGCTTCCAGCTCCGCCGAATCGGGAATCT 237
| | || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GCCCGAA-TCATCGTCTCGCCGCCGTCTTCGCGCTTCCAGCTCCGCCGAATCGGGAATCT 234
Query 238 TCCTTCCTCACCTTGTAGCTTCTATGGAGGACGTTGAGGAGACTTACATTATGGTGAAAC 297
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 235 TCCTCCCTCACCTTGTAGCTTCTATGGAGGAAGTTGAGGATACTTACATTATGGTGAAAC 294
Query 298 CTGATGGCATACAACGAGGCCTTGTAGGAGAAATCATTTCTCGCTTTGAGAAAAAGGGGT 357
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 295 CTGATGGCATACAACGAGGCCTTGTAGGAGAAATCATCTCTCGCTTTGAGAAGAAGGGAT 354
Query 358 TTAAACTTATTGGGCTCAAGATGTTTCAGTGCCCAAAAGAATTGGCTGAGGAGCATTATA 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 355 TTAAACTTATTGGGCTCAAGATGTTTCAGTGCCCAAAAGAATTGGCTGAGGAGCATTACA 414
Query 418 AGGATCTTAGTGCTAAATCATTCTTTCCTAACCTGATTGAGTACATCACTTCAGGTCCAG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 415 AGGATCTTAGTGCTAAATCATTCTTTCCTAACCTGATTGAGTACATCACTTCAGGCCCAG 474
Query 478 TTGTGTGTATGGCTTGGGAAGGTGTTGGTGTTGTTGCTTCAGCCAGGAAGCTAATAGGGA 537
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 475 TTGTGTGTATGGCTTGGGAAGGTGTTGGCGTTGTTGCTTCAGCCAGGAAGCTAATAGGGA 534
Query 538 AAACAGATCCGCTTCAAGCTGAACCTGGTACTATAAGAGGAGATCTTGCTGTGCAAACCG 597
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AAACAGATCCTCTTCAAGCTGAACCTGGTACTATAAGAGGAGATCTTGCTGTGCAAACCG 594
Query 598 GAAGGAACATTGTGCATGGTAGTGACAGCCCTGAAAACGGCAAGCGTGAGATTGGTCTGT 657
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 595 GAAGGAACATTGTGCACGGTAGTGATAGTCCTGAAAACGGCAAGCGTGAGATTGGTCTGT 654
Query 658 GGTTCAAAGAGGGCGAGCTATGCAAGTGGGATTCGGCTCTAGCTACATGGCTAAGGGAGT 717
|||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 655 GGTTCAAAGAAGGCGAGCTATGCGAGTGGGATTCGGCTCTGGCTACATGGCTAAGGGAGT 714
Query 718 GATCCTTGAGAAGAC 732
|||| ||||| ||||
Sbjct 715 GATCATTGAGGAGAC 729
Score = 95.3 bits (51), Expect = 7e-19
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 756 TACTTGTTTTCTTGTTACCGATGATGAGCTTTGGTGTTTTGTTCCTGATTTTGG 809
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 730 TACTTGTTTTCTTGTTACTGATGATGAGCTTTGGTGTTTTGTTCCTGATTTTGG 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5