BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63380.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951140 jgi|Araly1|951140|scaffold_803027.1 2739 0.0
> Ahg951140 jgi|Araly1|951140|scaffold_803027.1
Length=1732
Score = 2739 bits (1483), Expect = 0.0
Identities = 1643/1722 (95%), Gaps = 4/1722 (0%)
Strand=Plus/Plus
Query 29 TCTTCCAGAATGCTGACGAAAACCAACGACAGCCGTTTGATTGACCGGAGCTCCGGCTTC 88
||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 13 TCTTCAAGAATGCAGACGAAAAACAACGACAGCCGTTCGATTGACCGGAGCTCCGGCTTC 72
Query 89 GATCAACGGACAGGAATCTATCACAGTCTTCGTCCC-TCTCTTTCTCTACCTCCTATAGA 147
||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 73 GATCAACGGACAGGAATTTATCACAGTCTTCG-CCCTTCTCTTTCTCTACCTCCTATAGA 131
Query 148 TCAACCTCTCTCCGCCGCCGAATTCGCGCTTTCTCTCCTACTCAAATCCTCACCACCTGC 207
||||||||||||| ||||||||||||| |||||||| || | ||||||||||||||| ||
Sbjct 132 TCAACCTCTCTCCACCGCCGAATTCGCACTTTCTCTGCTCCGCAAATCCTCACCACCAGC 191
Query 208 CACCGCCGGGAAAAACATTGAAGCCTTAACCTACCTAGTTAACTCGAGCTCTGGTGATAA 267
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 192 CACCGCCGGGAAAAACATTGAAGCCTTAACCTTCCTAGTTAACTCGAGCTCTGGTGATAG 251
Query 268 CCTCACTTATGGAGAGCTTCTTCGTAGAGTTCGTTCTCTTGCTGTATCTCTCCGGGAGCG 327
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 252 CCTCACTTATGGAGAGCTTCTTCGTGGAGTTCGTTCTCTTGCTGTATCTCTCCGGGAGCG 311
Query 328 ATTTCCTTCTCTTGCCTCCAGAAATGTCGCTTTTATCCTCTCTCCTTCTTCGTTGGACAT 387
||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 312 ATTTCCTTCTCTTTCCTCCAGAAATGTCGCTTTTATCCTCTCTCCACCTTCGCTGCACAT 371
Query 388 ACCAGTGCTTTACTTAGCTTTGATGTCGATCGGTGTTGTTGTTTCACCGGCGAACCCAAT 447
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 372 ACCAGTGCTTTACTTAGCTTTAATGTCGATCGGTGTTGTTGTTTCACCGGCGAACCCAAT 431
Query 448 CGGATCTGAATCGGAGGTGAGTCATCAAGTCGAAGTCAGTGAACCAGTAATTGCGTTCGC 507
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 432 CGGATCTGAATCAGAGGTGAGTCATCAGGTTGAAGTCAGTGAACCAGTAATTGCGTTCGC 491
Query 508 GACATCGCAGACGGTTAAGAAGCTTCAATCCTCTTCTTTGCCTCTCGGAACT-GTTCTGA 566
|||||||||||||||||||||||||| ||||| ||||| |||||||||| | |||||||
Sbjct 492 GACATCGCAGACGGTTAAGAAGCTTCGGTCCTCATCTTTCCCTCTCGGAA-TCGTTCTGA 550
Query 567 TGGACTCGACTGAGTTTCTCTCCTGGTTAAATCGATCGGATTCTTCATCGGTTAATCCAT 626
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 551 TGGACTCGCCTGAGTTTCTCTCCTGGTTAAATCGATCGGATGCTTCATCGGTTAATCCAT 610
Query 627 TTCAGGTTCAGGTCAACCAATCGGACCCTGCCGCTATCCTCTTTTCCTCTGGAACAACCG 686
||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 611 TTCAGGTTCGGGTCAACCAATCGGACCCTGCCGCAATCCTCTTTTCGTCTGGAACTACCG 670
Query 687 GGCGGGTCAAAGGCGTTTTGCTCACTCACCGTAACCTAATCGCCTCGACCGCCGTATCTC 746
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 671 GGCGGGTCAAAGGCGTTTTGATCACTCACCGTAACCTAATCGCCTCGACCGCCGTGTCTC 730
Query 747 ACCAACGGACTCTCCAAGATCCGGTTAATTACGATCGCGTTGGACTGTTCTCGCTTCCGC 806
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 731 ACCAACGGACTCTCCAAGATCCGGTTGATTATGATCGCGTTGGACTGTTCTCGCTTCCGC 790
Query 807 TCTTCCACGTGTTTGGTTTCATGATGATGATTCGAGCCATCTCGCTTGGAGAGACATTGG 866
|||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||
Sbjct 791 TCTTCCACGTGTTTGGCTTCACGATGATGATTCGAGCCATCTCGCTTGGAGACACGCTGG 850
Query 867 TGCTTTTAGGGAGATTTGAACTCGAGGCGATGTTTAAGGCGGTGGAGAAATATAAGGTTA 926
|||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct 851 TGCTTTTAGGGAGATTCGAGCTTGAGGCGATGTTAAAGGCGGTGGAGAAATATAAGGTTA 910
Query 927 CTGGTATGCCTGTATCTCCTCCGTTGATTGTAGCGTTGGTCAAATCGGAGCTCACGAAGA 986
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 911 CTGGTATGCCTGTATCTCCTCCGTTGATTGTAGCATTGGTCAAATCGGAGCTAACGAAGA 970
Query 987 AGTACGATCTCCGGTCGTTGCGTTCCCTTGGCTGCGGAGGAGCTCCACTCGGCAAAGACA 1046
||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 971 AGTACGATCTCCGGTCGTTGCGTTCTCTTGGCTGCGGCGGCGCTCCACTCGGCAAAGACA 1030
Query 1047 TCGCAGAGAGGTTTAAGCAGAAATTCCCAGATGTAGATATTGTACAGGGCTATGGCTTGA 1106
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1031 TCGCAGAGAGGTTCAAGCAGAAATTCCCAGATGTGGAAATTGTACAGGGCTATGGCTTGA 1090
Query 1107 CAGAGAGCTCGGGACCAGCTGCCTCAACGTTTGGACCTGAAGAGATGGTAAAATATGGCT 1166
| ||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 1091 CGGAGAGCTCGGGGCCAGCTGCGTCAACTTTTGGACCTGAAGAGACGGTAAAATATGGCT 1150
Query 1167 CAGTTGGTCGTATCTCTGAGAATATGGAAGCCAAAATTGTTGATCCATCCACCGGAGAAT 1226
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1151 CAGTTGGTCGTATCTCTGAGAATTTGGAAGCCAAAATTGTTGATCCATCCACCGGAGAAG 1210
Query 1227 CCTTGCCACCGGGAAAAACTGGTGAACTCTGGCTCCGAGGACCAGTCATCATGAAAGGTT 1286
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1211 CCTTGCCACCGGGAAAAACCGGTGAACTATGGCTCCGAGGACCAGTCATCATGAAAGGTT 1270
Query 1287 ATGTGGGAAACGAGAAAGCGAGTGCGGAGACAGTAGACAAAGAAGGGTGGTTAAAGACTG 1346
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1271 ATGTGGGAAACGAGAAAGCGAGTGCGGAGACAGTAGACGAAGAAGGGTGGTTAAAGACTG 1330
Query 1347 GTGATCTCTGTTATTTTGATTCGGAAGATTTTCTATATATTGTTGATCGGCTAAAGGAGC 1406
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 1331 GTGATCTCTGTTATTTTGATGCGGAAGGTTTTCTATATATTGTTGATCGGCTAAAGGAAC 1390
Query 1407 TAATCAAATACAAGGCTTATCAGGTTCCACCGGTAGAGTTGGAGCAGATTCTTCACTCGA 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 TAATCAAATACAAGGCTTATCAGGTTCCACCGGTAGAGTTGGAGCAGATTCTTCACTCGA 1450
Query 1467 ATCCAGATGTGATTGATGCTGCAGTTGTTCCGTTCCCTGACGAGGATGCAGGAGAGATTC 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 ATCCAGATGTGATTGATGCTGCAGTTGTTCCGTTCCCTGACGAGGATGCAGGAGAGATTC 1510
Query 1527 CAATGGCTTTCATAGTGAGAAAACCAGGAAGCAATCTCAACGAAGCGCAAATCATTGATT 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 CAATGGCTTTCATAGTGAGAAAACCAGGAAGCAATCTCAACGAAGCGCAAATCATTGATT 1570
Query 1587 TCGTAGCTAAACAAGTTACTCCGTACAAGAAGGTAAGACGAGTTGCTTTTATAAATGCAA 1646
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1571 TCGTAGCTAAACAAGTTGCTCCGTACAAGAAGGTAAGACGAGTTGCTTTCATAAATGCAA 1630
Query 1647 TCCCAAAAAATCCTGCTGGCAAGATTCTGCGTCGGGAGCTTACTAAAATCGCTGTGGATG 1706
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1631 TCCCAAAAAATCCTGCTGGCAAGATTCTGCGTCGGGAACTTACTAAAATCGCCGTGGATG 1690
Query 1707 GCAATGCATCAAAACTTTGAGATAACCGGCTGGTTCATATAT 1748
||||||||||||| |||||||||||||||| || ||| ||||
Sbjct 1691 GCAATGCATCAAAGCTTTGAGATAACCGGCCGGCTCAGATAT 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5