BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63500.1 Length=385 Score E Sequences producing significant alignments: (Bits) Value Ahg951151 jgi|Araly1|951151|scaffold_803038.1 411 2e-114 > Ahg951151 jgi|Araly1|951151|scaffold_803038.1 Length=253 Score = 411 bits (222), Expect = 2e-114 Identities = 243/253 (96%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 32 TCTCTCTTTAAGACAAGAAGTTATGGCGGATTGGGGCCCAGTGTTGATCGCCGTGATCCT 91 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCTCTGTAAGACAAGAAGTTATGGCGGATTGGGGCCCAGTGTTGATCGCCGTGATCCT 60 Query 92 CTTCGTAGTTCTATCGCCGGGGCTTCTTTTCCAGATTCCGGCGGGAGGTCGAGTTGTCGA 151 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTCGTAGTTCTATCGCCGGGACTTCTTTTCCAGATTCCGGCGGGAGGTCGAGTTGTCGA 120 Query 152 ATTCGGTAATATGCAGACGAGTGGCGCTTCGATTCTCGTTCACGCCATCATTTTCTTTGG 211 ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct 121 ATTCGGTAATATGCAGACGAGTGGCGCGTCGATTCTCGTTCACGCAATCATCTTCTTTGG 180 Query 212 TCTCATCACTATCTTTACCATCGCCATAAACGTCCACATCTATTCCGGTTAACTGTT-TA 270 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || || Sbjct 181 TCTCATCACTATCTTCACCATCGCCATTAACGTCCACATCTATTCCGGTTAACTATTGTA 240 Query 271 GCCAGACAAACCG 283 |||||| |||||| Sbjct 241 GCCAGAGAAACCG 253 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13774167629 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5