BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63530.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497416 jgi|Araly1|497416|fgenesh2_kg.386__2__AT5G63530.2 1792 0.0
Ahg496541 jgi|Araly1|496541|fgenesh2_kg.8__2357__AT5G63530.2 1792 0.0
Ahg477542 jgi|Araly1|477542|fgenesh2_kg.3__243__AT3G02960.1 63.9 3e-09
> Ahg497416 jgi|Araly1|497416|fgenesh2_kg.386__2__AT5G63530.2
Length=1175
Score = 1792 bits (970), Expect = 0.0
Identities = 1096/1155 (95%), Gaps = 16/1155 (1%)
Strand=Plus/Plus
Query 133 aggaagagaagaaaccagaagcagcagaggaaaagaaaatggaagagaagaaacc---ag 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 29 AGGAAGAGAAGAAACCAGAAGCAGCAGAGGAAAAGAAAATGGAAGAGAAGAAACCAGAAG 88
Query 190 aagagaaaaaagaaggagaagacaagaaagtggatgctgagaaaaaaggagaagattctg 249
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 89 AAGAGAAAAAAGAAGGAGAAGAAAAGAAAGTGGAGGCTGAGAAAAAAGGAGAAGATTCTG 148
Query 250 acaagaagCCTCAAGAAGGAGAATCTAACAAAGATTCCAAAGAAGATTCTGCTCCGGCGG 309
||||||| |||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 149 ACAAGAAACCTC----A--AGAATCTAACAAAGATTCCAAAGAAGATTCTGCTCCCGCGC 202
Query 310 CGCCTGAGGCTCCAGCACCGCCTCCTCCGCCGCAAGAGGTTGTTCTTAAGGTTTACATGC 369
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 203 CGCCGGAGGCTCCAGCACCGCCTCCTCCGCCGCAAGAGATTGTTCTTAAGGTTTACATGC 262
Query 370 ACTGTGAAGGATGTGCTAGAAAAGTCCGCCGTTGTCTCAAAGGCTTCGAAGGAGTGGAAG 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 ACTGTGAAGGATGTGCTAGAAAAGTCCGCCGTTGTCTCAAAGGCTTCGAAGGAGTGGAAG 322
Query 430 ATGTGATGACTGATTGTAAAACGGGGAAAGTGGTGGTGAAAGGTGAGAAAGCTGATCCAT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 ATGTGATGACTGATTGTAAAACGGGGAAAGTGGTGGTGAAAGGTGAGAAAGCTGATCCAT 382
Query 490 TGAAAGTATTAGCTAGAGTTCAGAGGAAGACCCACCGTCAAGTTCAGCTTCTGTCTCCGA 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TGAAAGTATTAGCTAGAGTTCAGAGGAAGACCCACCGTCAAGTTCAGCTTCTGTCTCCGA 442
Query 550 TTCCTCCTCCGCCTCCGCCGCCGGAGAAGAAAGCAGAGGAGGATAAACCCATTGTGGAAG 609
||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 443 TTCCTCCGCCACCTCCGCCGCCGGAAAAGAAAGCAGAGGAGGAGAAACCCATTGTGGAAG 502
Query 610 AGAAGAAAGTGGAGCCTCCGGTGGTTGTGACGGTGGTTCTTAAGGTTCACATGCACTGTG 669
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 503 AGAAGAAAGTGAAGCCTCCGGTGGTCGTGACGGTGGTTCTTAAGGTTCACATGCACTGTG 562
Query 670 AAGCTTGTGCGACAGAGATCAAGAAACGGATCATGAGAATGAAAGGAGTGGAATCTGCTG 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AAGCTTGTGCGACAGAGATCAAGAAACGGATCATGAGAATGAAAGGAGTGGAATCTGCTG 622
Query 730 AATCCGACTTAAAGAGTTCTCAAGTGACGGTGAAAGGAGTTTTTGAACCACAAAAGCTTG 789
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 623 AATCCGACTTAAAGGGTTCTCAAGTAACGGTGAAAGGAGTGTTTGAACCACAAAAGCTTG 682
Query 790 TAGAATACGTTTATAAGCGAACCGGAAAACATGCTGCGATCATGAAAATCGACCCACCGC 849
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 683 TAGAGTACGTTTATAAGCGAACCGGAAAACACGCTGCGATCATGAAAATCGACCCACCGC 742
Query 850 CTCCACCACCACCTGAGGAGGCGGCTGCGGCAGC-g-gaaggagagaagaaggaa-ga-a 905
| |||||||||||||||||| |||| || | || | |||| || |||||||||| | |
Sbjct 743 CCCCACCACCACCTGAGGAGTCGGCAGCAGAAGGAGAGAAGAAG-GAAGAAGGAAAGGGA 801
Query 906 gaaaagggagaaggagaatccaaaggcgaagaagggaaggatgataaggcgaagacggac 965
||||| || | |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 802 GAAAACGGTGGAGGAGAATCCAAAGGCGAAGAAGGGAAGGACGAAAAGGCGAAGACGGAC 861
Query 966 gaagaaaagaaagaaggGGATGGTGGTAAAGGGGAAGGCGAAGCAGCGGATAATGGCGGT 1025
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 862 GAAGAAAAGAAAGAAGGGGATGGCGGTAAAGGGGAAGGCGAAGCAGCGGAAAATGGCGGT 921
Query 1026 GGGGAGGAAGAAGGCAAAGTTGTGGAGGTGAGAAAGATAGAGAATCCTTATTACTACTAC 1085
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 GGGGAGGAAGAGGGTAAAGTTGTGGAGGTGAGAAAGATAGAGAATCCTTATTACTACTAC 981
Query 1086 TATTACCAACCACCGCGTGTGGC-GATTCCGCCTATGGAAATGCCGCCACACGCTTATCC 1144
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 982 TATTACCAACCACCGCGTGTGGCAG-TTCCGCCTATGGAAATGCCGCCACACGCTTATCC 1040
Query 1145 GCCTCAATTGTTCAGCGACGAGAATCCAAATGCATGTACTGTAATGTAACAAAGAAAAAC 1204
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1041 GCCTCAATTATTCAGTGACGAGAATCCAAATGCATGTACCGTAATGTAACAAAGAAAAAC 1100
Query 1205 GCAAATGCTATAAAGGGTATAATGGGGAATATTTTGAACAATTTTGATGAAGTGGGTACA 1264
||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1101 GCAAACGCTATAATGGGTATAATGGGAAATATTCTGAACAATTTTGATGAAGTGGGTACA 1160
Query 1265 TGGCATTTGCTGTCT 1279
|||| ||||||||||
Sbjct 1161 TGGCCTTTGCTGTCT 1175
> Ahg496541 jgi|Araly1|496541|fgenesh2_kg.8__2357__AT5G63530.2
Length=1175
Score = 1792 bits (970), Expect = 0.0
Identities = 1096/1155 (95%), Gaps = 16/1155 (1%)
Strand=Plus/Plus
Query 133 aggaagagaagaaaccagaagcagcagaggaaaagaaaatggaagagaagaaacc---ag 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 29 AGGAAGAGAAGAAACCAGAAGCAGCAGAGGAAAAGAAAATGGAAGAGAAGAAACCAGAAG 88
Query 190 aagagaaaaaagaaggagaagacaagaaagtggatgctgagaaaaaaggagaagattctg 249
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 89 AAGAGAAAAAAGAAGGAGAAGAAAAGAAAGTGGAGGCTGAGAAAAAAGGAGAAGATTCTG 148
Query 250 acaagaagCCTCAAGAAGGAGAATCTAACAAAGATTCCAAAGAAGATTCTGCTCCGGCGG 309
||||||| |||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 149 ACAAGAAACCTC----A--AGAATCTAACAAAGATTCCAAAGAAGATTCTGCTCCCGCGC 202
Query 310 CGCCTGAGGCTCCAGCACCGCCTCCTCCGCCGCAAGAGGTTGTTCTTAAGGTTTACATGC 369
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 203 CGCCGGAGGCTCCAGCACCGCCTCCTCCGCCGCAAGAGATTGTTCTTAAGGTTTACATGC 262
Query 370 ACTGTGAAGGATGTGCTAGAAAAGTCCGCCGTTGTCTCAAAGGCTTCGAAGGAGTGGAAG 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 ACTGTGAAGGATGTGCTAGAAAAGTCCGCCGTTGTCTCAAAGGCTTCGAAGGAGTGGAAG 322
Query 430 ATGTGATGACTGATTGTAAAACGGGGAAAGTGGTGGTGAAAGGTGAGAAAGCTGATCCAT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 ATGTGATGACTGATTGTAAAACGGGGAAAGTGGTGGTGAAAGGTGAGAAAGCTGATCCAT 382
Query 490 TGAAAGTATTAGCTAGAGTTCAGAGGAAGACCCACCGTCAAGTTCAGCTTCTGTCTCCGA 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TGAAAGTATTAGCTAGAGTTCAGAGGAAGACCCACCGTCAAGTTCAGCTTCTGTCTCCGA 442
Query 550 TTCCTCCTCCGCCTCCGCCGCCGGAGAAGAAAGCAGAGGAGGATAAACCCATTGTGGAAG 609
||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 443 TTCCTCCGCCACCTCCGCCGCCGGAAAAGAAAGCAGAGGAGGAGAAACCCATTGTGGAAG 502
Query 610 AGAAGAAAGTGGAGCCTCCGGTGGTTGTGACGGTGGTTCTTAAGGTTCACATGCACTGTG 669
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 503 AGAAGAAAGTGAAGCCTCCGGTGGTCGTGACGGTGGTTCTTAAGGTTCACATGCACTGTG 562
Query 670 AAGCTTGTGCGACAGAGATCAAGAAACGGATCATGAGAATGAAAGGAGTGGAATCTGCTG 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AAGCTTGTGCGACAGAGATCAAGAAACGGATCATGAGAATGAAAGGAGTGGAATCTGCTG 622
Query 730 AATCCGACTTAAAGAGTTCTCAAGTGACGGTGAAAGGAGTTTTTGAACCACAAAAGCTTG 789
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 623 AATCCGACTTAAAGGGTTCTCAAGTAACGGTGAAAGGAGTGTTTGAACCACAAAAGCTTG 682
Query 790 TAGAATACGTTTATAAGCGAACCGGAAAACATGCTGCGATCATGAAAATCGACCCACCGC 849
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 683 TAGAGTACGTTTATAAGCGAACCGGAAAACACGCTGCGATCATGAAAATCGACCCACCGC 742
Query 850 CTCCACCACCACCTGAGGAGGCGGCTGCGGCAGC-g-gaaggagagaagaaggaa-ga-a 905
| |||||||||||||||||| |||| || | || | |||| || |||||||||| | |
Sbjct 743 CCCCACCACCACCTGAGGAGTCGGCAGCAGAAGGAGAGAAGAAG-GAAGAAGGAAAGGGA 801
Query 906 gaaaagggagaaggagaatccaaaggcgaagaagggaaggatgataaggcgaagacggac 965
||||| || | |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 802 GAAAACGGTGGAGGAGAATCCAAAGGCGAAGAAGGGAAGGACGAAAAGGCGAAGACGGAC 861
Query 966 gaagaaaagaaagaaggGGATGGTGGTAAAGGGGAAGGCGAAGCAGCGGATAATGGCGGT 1025
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 862 GAAGAAAAGAAAGAAGGGGATGGCGGTAAAGGGGAAGGCGAAGCAGCGGAAAATGGCGGT 921
Query 1026 GGGGAGGAAGAAGGCAAAGTTGTGGAGGTGAGAAAGATAGAGAATCCTTATTACTACTAC 1085
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 GGGGAGGAAGAGGGTAAAGTTGTGGAGGTGAGAAAGATAGAGAATCCTTATTACTACTAC 981
Query 1086 TATTACCAACCACCGCGTGTGGC-GATTCCGCCTATGGAAATGCCGCCACACGCTTATCC 1144
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 982 TATTACCAACCACCGCGTGTGGCAG-TTCCGCCTATGGAAATGCCGCCACACGCTTATCC 1040
Query 1145 GCCTCAATTGTTCAGCGACGAGAATCCAAATGCATGTACTGTAATGTAACAAAGAAAAAC 1204
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1041 GCCTCAATTATTCAGTGACGAGAATCCAAATGCATGTACCGTAATGTAACAAAGAAAAAC 1100
Query 1205 GCAAATGCTATAAAGGGTATAATGGGGAATATTTTGAACAATTTTGATGAAGTGGGTACA 1264
||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1101 GCAAACGCTATAATGGGTATAATGGGAAATATTCTGAACAATTTTGATGAAGTGGGTACA 1160
Query 1265 TGGCATTTGCTGTCT 1279
|||| ||||||||||
Sbjct 1161 TGGCCTTTGCTGTCT 1175
> Ahg477542 jgi|Araly1|477542|fgenesh2_kg.3__243__AT3G02960.1
Length=741
Score = 63.9 bits (34), Expect = 3e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 349 TTGTTCTTAAGGTTTACATGCACTGTGAAGGATGTGC 385
||||||| |||||||||||||||||||||||||||||
Sbjct 113 TTGTTCTGAAGGTTTACATGCACTGTGAAGGATGTGC 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5