BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63570.1 Length=1728 Score E Sequences producing significant alignments: (Bits) Value Ahg496546 jgi|Araly1|496546|fgenesh2_kg.8__2362__AT5G63570.1 2529 0.0 Ahg937638 jgi|Araly1|937638|scaffold_501829.1 1293 0.0 > Ahg496546 jgi|Araly1|496546|fgenesh2_kg.8__2362__AT5G63570.1 Length=1681 Score = 2529 bits (1369), Expect = 0.0 Identities = 1599/1704 (94%), Gaps = 40/1704 (2%) Strand=Plus/Plus Query 17 AATCATAAGCCCACCCACTTCGATTACCAACTCCGACCGCCAGAGACAGCGAGTTTCAGA 76 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 1 AATCAGAAGCCCACCCACTTCGATTACCAACTCCGACCGCCAGAGACAGCGAGCTTCAAA 60 Query 77 TCAAAGATGTCGGCGACGCTTACAGGATCGGGAACTGCTTTGGGGTTTTCGTGTTCCTCG 136 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCAACGATGTCGGCGACGCTTACAGGATCGGGAACTGCTTTGGGGTTTTCGTGTTCCTCA 120 Query 137 AAGATCTCGAAAAGAGTTTCTTCTTCACCAG-CTTCTAACCGATGCTGCATCAAGATGTC 195 ||||||||||||||| |||||||||| || | ||||||| |||||||||||||||||||| Sbjct 121 AAGATCTCGAAAAGAATTTCTTCTTCGCC-GTCTTCTAATCGATGCTGCATCAAGATGTC 179 Query 196 TGTTTCCGTCGACGAGAAGAAGAAAAGTTTCAGTCTTCAGAAATCTGAGGAAGCTTTCAA 255 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 180 TGTTTCCGTCGACGAGAAGAAGAAAAGTTTCACTCTTCAGAAATCCGAGGAAGCTTTCAA 239 Query 256 TGCTGCTAAGAATCTAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCATTCAAATCCGT 315 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 TGCTGCTAAGAATCTAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCCTTCAAATCCGT 299 Query 316 TGGTGGACAACCTGTTTTGATTGATTCTGTTAAAGGCTCAAAAATGTGGGACATTGATGG 375 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 TGGTGGACAACCTGTTTTGATTGATTCCGTTAAAGGCTCAAAAATGTGGGACATTGATGG 359 Query 376 AAATGAGTATATTGACTACGTTGGCTCTTGGGGACCTGCTATTATTGGCCATGCTGATGA 435 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 360 AAATGAGTACATTGACTACGTTGGCTCTTGGGGACCAGCTATTATTGGCCATGCCGATGA 419 Query 436 CGAGGTTCTTGCGGCTCTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGCTCCTTG 495 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CGAGGTTCTTGCAGCTTTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGCTCCTTG 479 Query 496 TCTCTTGGAGAATGTTTTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTGAAATGGT 555 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCTCTTAGAGAATGTTTTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTGAAATGGT 539 Query 556 TCGGTTTGTTAATTCTGGTACTGAAGCGTGTATGGGTGTGCTTCGTCTTGCCAGAGCTTT 615 ||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 540 TCGGTTTGTCAACTCTGGTACTGAAGCGTGTATGGGTGTGCTCCGTCTCGCCAGAGCTTT 599 Query 616 CACTAACAAAGAGAAGTTCATTAAGTTTGAAGGGTGTTATCACGGTCATGCTAACGCCTT 675 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 600 CACTAACAAAGAGAAATTCATCAAGTTTGAAGGGTGTTATCACGGTCATGCTAACGCCTT 659 Query 676 CCTTGTTAAAGCTGGTAGTGGTGTTGCCACTTTGGGGCTACCGGACTCTCCAGGTGTCCC 735 ||||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||| Sbjct 660 TCTTGTTAAAGCTGGTAGCGGTGTAGCCACTCTAGGGCTACCGGACTCACCAGGTGTCCC 719 Query 736 TAAAGCAGCTACTTCAGATACTTTAACAGCTCCGTACAATGATCTTGAAGCTGTTGAGAA 795 ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 720 TAAAGCAGCTACTTCTGATACTTTAACAGCTCCGTACAACGATCTCGAAGCTGTTGAGAA 779 Query 796 GCTCTTTGCTGCGCATAAAGGGGAGATTTCTGCGGTAATTCTCGAACCTGTTGTTGGTAA 855 ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 780 GCTCTTTGCAGCGCATAAAGGGGAGATTTCTGCGGTTATTCTCGAACCCGTTGTTGGTAA 839 Query 856 CTCCGGATTCATCCCTCCTACTCCGGAATTCATCAACGGTTTACGCCAGCTTACTAAAGA 915 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 840 CTCTGGATTCATCCCTCCTACACCGGAATTCATCAACGGTTTACGCCAGCTTACTAAAGA 899 Query 916 CAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACTGGATTTCGTCTAGCCTATGGTGG 975 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 900 CAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACCGGATTTCGTCTAGCCTATGGTGG 959 Query 976 AGCCCAAGAATACTTTGGAATCACGCCTGATCTAACTACTCTTGGTAAAATTATTGGTGG 1035 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 960 AGCCCAAGAATACTTCGGAATCACGCCTGATCTAACTACTCTTGGTAAAATTATTGGCGG 1019 Query 1036 GGGTCTTCCCGTGGGAGCATACGGTGGTAGACGTGATATTATGGAGATGGTTGCTCCCGC 1095 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1020 GGGTCTTCCCGTGGGAGCATACGGTGGGAGACGTGATATTATGGAGATGGTTGCGCCCGC 1079 Query 1096 TGGACCAATGTACCAAGCCGGGACTCTAAGTGGTAATCCGCTGGCAATGACTGCAGGGAT 1155 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 AGGACCAATGTACCAAGCTGGGACTCTAAGTGGTAATCCGCTGGCAATGACTGCAGGGAT 1139 Query 1156 TCACACGCTGAAGCGGCTAAAGCAGGCAGGAACATATGAGTATTTAGACAAGATCACGAA 1215 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1140 TCACACGCTGAAGCGGCTAAAGCAGGCAGGAACATATGAGTATTTAGACAAGATCACAAA 1199 Query 1216 GGAACTAACCAACGGAATCTTAGAAGCCGGAAAGAAAACCGGGCATCCAATGTGCGGGGG 1275 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1200 GGAACTAACCAACGGAATCTTAGAAGCTGGAAAGAAAACCGGGCATCCAATGTGCGGCGG 1259 Query 1276 TTACATAAGCGGTATGTTTGGATTCTTTTTCGCAGAAGGACCGGTTTACAACTTTGCAGA 1335 ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1260 TTATATAAGCGGTATGTTTGGTTTCTTTTTCGCAGAAGGACCGGTCTACAACTTTGCAGA 1319 Query 1336 CT-CAAAGAAGAGCGACACAGAGAAGTTTGGTAGGTTTTTCAGGGGAATGTTGGAAGAAG 1394 | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1320 -TGCAAAGAAGAGCGACACCGAGAAGTTTGGTAGGTTTTTCAGGGGAATGTTGGAAGAAG 1378 Query 1395 GTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAGCTTGGCTCACACTCCCG 1454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 GTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAGCTTGGCTCACACTCCCG 1438 Query 1455 AGGATATACAGTTAACAATTGCTGCGGCTGAGAGGGTACTGAGTAGGATCTAGAATGTTC 1514 ||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1439 AGGATATACAGTTCACGATTGCTGCGGCTGAGAGGGTACTCAGTAGGATCTAGAATGTTC 1498 Query 1515 CCAACCCTGAGTCTAGTTTCACAATCTTCATGTTTTGGGGACGATGTGTATGGTTTGATG 1574 |||||||||||||||| ||||||||||| ||| ||| || ||| | Sbjct 1499 CCAACCCTGAGTCTAGCTTCACAATCTT-ATGCTTT--------TG---ATG-----A-- 1539 Query 1575 AGCGGATGGAATAATTCTTGTGTAGTGAGTTGAATTTTGTTT-CAT------CA--G-TA 1624 | |||||| ||||||||||||||||||||||||||||||||| | | || | || Sbjct 1540 A-CGGATGAAATAATTCTTGTGTAGTGAGTTGAATTTTGTTTTCTTTTGTTTCATCGATA 1598 Query 1625 GAGCTTGAGATTTTTTGTATTTTAAGATCATCTGTT-----AATGTAATGGTTTTATGTT 1679 ||| ||||| ||||| ||||| | |||||||||||| ||||||||||||||||||| Sbjct 1599 GAGGTTGAGGTTTTT-GTATTGTCAGATCATCTGTTCTGTTAATGTAATGGTTTTATGTT 1657 Query 1680 ATCTCCTAAAGAAATATTGCTTTT 1703 |||||||| ||||||||||||||| Sbjct 1658 ATCTCCTAGAGAAATATTGCTTTT 1681 > Ahg937638 jgi|Araly1|937638|scaffold_501829.1 Length=1473 Score = 1293 bits (700), Expect = 0.0 Identities = 1210/1455 (83%), Gaps = 40/1455 (3%) Strand=Plus/Plus Query 83 ATGTCGGCGACGCTTACAGGATC-GGGAACTGCTTTGGGGTTTTCGTGTTCCTCGAAGAT 141 ||| ||||||||||||||||||| ||| | |||| | ||||||||||||||| | ||| | Sbjct 21 ATGGCGGCGACGCTTACAGGATCAGGG-ATTGCTCTAGGGTTTTCGTGTTCCGCTAAGTT 79 Query 142 CTCGAAAAGAG--T-TTCTTCTTC-AC--CAG-CTTCTAACCGAT-GCTGCATCAAGATG 193 ||| || |||| | ||||||||| | | | | || ||||| | |||||||||||||| Sbjct 80 CTCTAAGAGAGCCTCTTCTTCTTCTTCGTC-GTCGTCCAACCG-TCGCTGCATCAAGATG 137 Query 194 TCTGTTTCCGTCGACGAGAAGAA-GAA-AAGTTTCAGTCTTCAGAAATCTGAGGAAGCTT 251 || ||||| || || ||||| || ||| ||| |||| ||||||||||||||||||||||| Sbjct 138 TCAGTTTCAGTAGAAGAGAA-AACGAAGAAG-TTCACTCTTCAGAAATCTGAGGAAGCTT 195 Query 252 TCAATGCTGCTAAGAATC-TAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCATTCAAA 310 |||||||||| ||||| | ||||||||||||||||||| || ||||| || || |||||| Sbjct 196 TCAATGCTGCCAAGAA-CTTAATGCCTGGAGGTGTGAACTCACCTGTACGTGCTTTCAAA 254 Query 311 TCCGTTGGTGGACAACCTGTTTTGATTGATTCTGTTAAA-GGCTCAAAAATGTGGGACAT 369 || |||||||||||||| ||| |||| ||||||| ||| || ||| ||| | ||||| Sbjct 255 TCTGTTGGTGGACAACCAGTTGTGATGGATTCTG-CAAAGGGTTCACGAATAAGAGACAT 313 Query 370 TGATGGAAATGAGTATATTGACTACGTTGGCTCTTGGGGACCTGCTATTATTGGCCATGC 429 |||||||||||| || ||||| || ||||| ||||||||||| ||||| ||||| ||||| Sbjct 314 TGATGGAAATGAATACATTGATTATGTTGGTTCTTGGGGACCAGCTATAATTGGTCATGC 373 Query 430 TGATGACGAGGTTCTTGCGGCTCTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGC 489 |||||| ||||||||||| ||| | |||||||| |||||||||||||||||||||||||| Sbjct 374 TGATGATGAGGTTCTTGCAGCTTTGGCTGAGACAATGAAGAAAGGAACAAGCTTTGGTGC 433 Query 490 TCCTTGTCTCTTGGAGAATGTT-TTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTG 548 |||||||||||| ||||||||| || ||||||||||| || ||||||||||| || |||| Sbjct 434 TCCTTGTCTCTTAGAGAATGTTCTT-GCTGAGATGGTGATTTCAGCTGTTCCAAGTATTG 492 Query 549 AAATGGTTCGGTTTGTTAATTCTGGTACTGAAGCGTGTATGGGTGTGCTTCGTCTTGC-C 607 ||||||||||||||||||| || ||||| || || |||||||| ||||| |||||||| | Sbjct 493 AAATGGTTCGGTTTGTTAACTCGGGTACGGAGGCATGTATGGGCGTGCTACGTCTTGCTC 552 Query 608 AGAGCTTTCACTAAC-AAAGAGAAGTTCATTAAGTTTGAAGGGTGTTATCACGGTCATGC 666 | || ||||| | ||| | |||||||| ||||| ||||| |||||||| |||||||| Sbjct 553 -GTGCCTTCAC-AGGGAAACAAAAGTTCATCAAGTTCGAAGGTTGTTATCATGGTCATGC 610 Query 667 TAACGCCTTCCTTGTTAAAGCTGGTAGTGGTGTTGCCACTTTGGGGCTACCGGACTCTCC 726 ||| | |||||||| ||||| ||||||||||| || |||||||| ||||| ||||| || Sbjct 611 AAACTCTTTCCTTGTCAAAGCAGGTAGTGGTGTCGCTACTTTGGGTCTACCTGACTCGCC 670 Query 727 AGGTGTCCCTAAAGCAGCTACTTCAGATACTTTAACAGCTCCGTACAATGATCTTGAAGC 786 |||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||| || Sbjct 671 TGGTGTCCCTAAATCAGCTACTTCAGATACTCTAACAGCTCCTTACAATGATATTGCTGC 730 Query 787 TGTTGAGAAGCTCTTTGCTGCGCATAAAGGGGAGATTTCTGCGGTAATTCTCGAACCTGT 846 ||||||| |||| |||| || | ||||| ||||| ||||| | ||||| |||||||| Sbjct 731 TGTTGAGCAGCTTTTTGAGGCAAACAAAGGCGAGATAGCTGCGATCATTCTTGAACCTGT 790 Query 847 TGTTGGTAACTCCGGATTCATCCCTCCTACTCCGGAATTCATCAACGGTTTACGCCAGCT 906 |||||||||||| || || || | |||| || || ||||| | || |||||| | | Sbjct 791 TGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAATACGCCGGAT 850 Query 907 TACTAAAGACAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACTGGATTTC-GTCTAG 965 ||||||||||||||||| |||||| || ||||||||||||||||| || |||| || ||| Sbjct 851 TACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACGGG-TTTCCGTTTAG 909 Query 966 CCTATGGTGGAGCCCAAGAATACTTTGGAATCACGCCTGATCT-AACTACTCTTGGTAAA 1024 ||||||||||||| |||||||||||||||||||| ||||| || ||| |||||||| ||| Sbjct 910 CCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGA-CTTAACAACTCTTGGGAAA 968 Query 1025 ATTATTGGTGGGGGTCTTCCCGTGGGAGCATACGGTGGTAGACGTGATATTATGGAGATG 1084 || || ||||| |||||||| ||||||||||||||||| ||| | || || ||||| ||| Sbjct 969 ATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCATGGAAATG 1028 Query 1085 GTTGCTCCCGCTGGACCAATGTACCAAGCCGGGACTCTAAGTGGTAATCCGCTGGCAATG 1144 ||||| ||||| ||||| ||||| ||||| || || |||||||||||||||||||| ||| Sbjct 1029 GTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGCTGGCTATG 1088 Query 1145 ACTGCAGGG-ATTCACACGCTGAAGCGGCTAAAG-CAGGCAGGAACATATGAGTATTTAG 1202 || || ||| |||||||| ||||||||| ||| | ||| | || |||||||| || |||| Sbjct 1089 ACAGC-GGGTATTCACACACTGAAGCGGTTAA-GTCAGCCTGGGACATATGAATACTTAG 1146 Query 1203 ACAAGATCACGAAGGAACTAACCAACGGAAT-CTTAGAAGCCGGAAAGAAAACCGGGCAT 1261 |||||||||| ||||| || || || || || || ||||||||| |||||||| |||||| Sbjct 1147 ACAAGATCACAAAGGAGCTTACAAATGGGATACT-AGAAGCCGGGAAGAAAACGGGGCAT 1205 Query 1262 CCAATGTGCGGGGGTTACATAAGCGGTATGTTTGGATTCTTTTTCGCAGAAGGACCGGTT 1321 | ||||| || || |||||||| || ||||| || ||||| ||| | |||||||| || Sbjct 1206 GCGATGTGTGGTGGATACATAAGTGGGATGTTCGGTTTCTTCTTCACTGAAGGACCCGTC 1265 Query 1322 TACAACTT-TGCAGACT-CAAAGAAGAGCGACACAGAGAAGTTTGGTAGGTTTTTCAGGG 1379 ||| | || | | || | | ||||||||||| |||||||||||||| | ||||||||| | Sbjct 1266 TACGATTTCT-CGGA-TGCCAAGAAGAGCGATACAGAGAAGTTTGGAAAGTTTTTCAGAG 1323 Query 1380 GAATGTTGGAAGAAGGTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAGCT 1439 ||||||||||||||||||| ||||| ||||| ||||| || |||||||| ||||| |||| Sbjct 1324 GAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACCAGCT 1383 Query 1440 TGGCTCACACTCCCGAGGATATACAGTTAACAATTGCTGCGGCTGAGAGGGTACTGAGTA 1499 ||||||| ||| | || || || || || || || || ||||| |||| ||| || ||| Sbjct 1384 TGGCTCATACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAAGTC 1443 Query 1500 GGATCTAGAATGTTC 1514 ||||||| ||||||| Sbjct 1444 GGATCTAAAATGTTC 1458 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64829596990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5