BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63620.1 Length=1673 Score E Sequences producing significant alignments: (Bits) Value Ahg496551 jgi|Araly1|496551|fgenesh2_kg.8__2367__AT5G63620.2 2281 0.0 > Ahg496551 jgi|Araly1|496551|fgenesh2_kg.8__2367__AT5G63620.2 Length=1449 Score = 2281 bits (1235), Expect = 0.0 Identities = 1382/1453 (95%), Gaps = 10/1453 (1%) Strand=Plus/Plus Query 88 TGTCTCTTTCGTTGCCCAAATCTCCGATCAAATTCGTCCGTCGTGTTTGCATGGCGTTTG 147 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1 TGTCTCTTTCGTTGCCCAAAACTCCGATCAAATTCCTCCGTCGTGTTTGCATGGCGTTTG 60 Query 148 CTCCGATTCTCCGCCGCGCCTCCGCCGTTAAGAACCTCTTCTCTTTAACAAGACTCGCCG 207 ||||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||| Sbjct 61 CTCCGATTCTCCGCCGCGCCTCCGCCGCTAAGAACCTCTTGTCCTTAACTAGACTCGCCG 120 Query 208 TTGGCTCTGC--C-CTCTCCACTAGGTCTCTCCAAACCGGAGCCTCCGGCGATGATTCTC 264 || |||| | | ||||||||||||||||| ||||||||| | ||||| ||||| |||| Sbjct 121 CTGCCTCTTCTTCTCTCTCCACTAGGTCTCTTCAAACCGGAACTTCCGGTGATGACTCTC 180 Query 265 AATCGATGGGTGGGTATCACGTGAGCCCCGGCGGATTCATGCGTGGAGCCGTGTATCGCG 324 |||| ||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 181 AATCCATGTCTGGGTATCACGTGAGCTCCGGCGGGTTCATGCGTGGAGCCGTGTATCGCG 240 Query 325 AGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAATCCAATGAAA 384 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 AGCCCAATAAGCCTCTAACCATCGAAGAATTTCATATTCCCCGCCCCAAAGCCAATGAAA 300 Query 385 TTCTCATCAAAACCAAAGCTTGTGGAGTTTGCCACTCTGATCTTCATGTGATGAAAGGAG 444 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 301 TTCTCATCAAAACCAAAGCTTGTGGAGTTTGTCACTCTGATCTTCATGTGATGAAAGGAG 360 Query 445 AGATACCGTTCGCTAGTCCTTGTGTTATTGGTCATGAGATTACTGGTGAAGTTGTTGAAC 504 ||||||| || |||||||||||||| ||||||||||| || ||||||||||||||||| | Sbjct 361 AGATACCATTTGCTAGTCCTTGTGTAATTGGTCATGAAATCACTGGTGAAGTTGTTGAGC 420 Query 505 ATGGTCCACTTACTGATCACAAGATCATTAATAGATTTCCAATCGGGTCTCGTGTAGTTG 564 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ACGGTCCACTTACTGATCACAAGATCATTAATAGATTTCCAATCGGGTCTCGTGTAGTTG 480 Query 565 GAGCTTTCATTATGCCTTGTGGAACCTGTTCTTATTGTGCTAAGGGCCATGATGATCTAT 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GAGCTTTCATTATGCCTTGTGGAACCTGTTCTTATTGTGCTAAGGGCCATGATGATCTAT 540 Query 625 GTGAAGACTTCTTTGCTTACAACAGAGCCAAGGGAACTCTTTACGATGGCGAAACTCGTC 684 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 541 GTGAAGACTTCTTTGCTTACAATAGAGCTAAGGGAACTCTTTACGATGGCGAAACTCGTC 600 Query 685 TCTTTTTGCGACATGATGATTCACCAGTGTATATGTATAGTATGGGAGGGATGGCTGAGT 744 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 601 TCTTTTTGCGACATGATGATTCACCAGTGTATATGTACAGTATGGGAGGTATGGCTGAGT 660 Query 745 ACTGTGTTACACCAGCTCATGGTTTAGCTCCTCTACCAGAGTCTTTGCCCTACTCTGAAT 804 ||||||| ||||||||||| || |||||||||||||| ||||| ||||||||| |||||| Sbjct 661 ACTGTGTCACACCAGCTCACGGGTTAGCTCCTCTACCGGAGTCGTTGCCCTACACTGAAT 720 Query 805 CTGCCATTCTGGGATGTGCTGTTTTTACAGCATATGGTGCTATGGCTCATGCTGCTGAGA 864 |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CTGCAATTCTAGGTTGTGCTGTTTTTACAGCATATGGTGCTATGGCTCATGCTGCTGAGA 780 Query 865 TCCGTCCTGGAGATTCTATTGCAGTTATTGGAATTGGTGGTGTGGGCTCCAGTTGTTTGC 924 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 781 TCCGTCCTGGAGATTCTATTGCTGTTATTGGAATTGGTGGTGTTGGCTCCAGTTGTTTGC 840 Query 925 AGATCGCAAGGGCTTTTGGAGCCTCGGATATCATTGCTGTGGATGTTCAGGATGATAAAT 984 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 841 AGATCGCGAGGGCTTTTGGAGCCTCGGATATAATTGCTGTGGATGTTCAGGATGATAAAT 900 Query 985 TACAGAAGGCCAAGACACTTGGTGCTACTCATATTGTCAATGCTGCTAAAGAAGATGCTG 1044 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 901 TGCAGAAGGCCAAGACACTTGGTGCTACCCATATTGTCAATGCTGCTAAAGAAGATGCTG 960 Query 1045 TTGAAAGGATAAGAGAAATAACCGGTGGGATGGGTGTTGATGTTGCTGTTGAAGCCTTGG 1104 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TTGACAGGATAAGAGAAATAACCGGTGGGATGGGTGTTGATGTTGCTGTTGAAGCCTTGG 1020 Query 1105 GAAAGCCTCAAACTTTCATGCAGTGCACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGA 1164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 GAAAGCCTCAAACTTTCATGCAGTGCACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGA 1080 Query 1165 TGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAATCGACTTGTTCGTA 1224 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1081 TGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAACCGACTTGTTCGTA 1140 Query 1225 GAAAGATAAAAGTTATAGGATCTTATGGAGGAAGAGCAAGACAGGATCTTCCTAAAGTAG 1284 ||||| | |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1141 GAAAGGTTTGGGTTATAGGGTCATATGGAGGAAGAGCAAGACAGGATCTTCCTAAAGTAG 1200 Query 1285 TGAAATTGGCAGAGTCAGGGATTTTCAATCTCACAAACGCAGTCTCAAGTAAATACAAGT 1344 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 TGAAGTTGGCAGAGTCAGGGATTTTCAATCTCACAAACGCAGTCTCAAGTAAATACAAGT 1260 Query 1345 TTGAAGATGCAGGAAAAGCATTTCAAGATCTCAACGAAGGCAAAATCGTGAGCCGAGGTG 1404 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1261 TTGAAGATGCAGGAAAAGCATTTCAAGATCTCAATGAAGGCAAAATCGTGAGCCGAGGTG 1320 Query 1405 TTGTTGAGATACTATAACCAATATAGCCTTTTGATTCTGGTTTGTGAATGACTGCTTCAC 1464 |||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| Sbjct 1321 TTGTTGAGATACTATAACCA-TA--GCCTTTTGATTCTGGTTTGGGAATGACTGCTTCAT 1377 Query 1465 ACCTG-TTTCACTGAGGTCTATTTTT-AGTTGCTACAATCTTCAGA-CAAGGTCATTGTT 1521 ||||| ||| || ||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 1378 ACCTGATTT-ACAGAGGTCTATTTTTTAGTTGCTACAATCTTCAGAACAAGGTCATTGTT 1436 Query 1522 AATCTGATATTTG 1534 ||||||||||||| Sbjct 1437 AATCTGATATTTG 1449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62734633515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5