BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63780.1
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496566 jgi|Araly1|496566|fgenesh2_kg.8__2382__AT5G63780.1 1964 0.0
> Ahg496566 jgi|Araly1|496566|fgenesh2_kg.8__2382__AT5G63780.1
Length=1618
Score = 1964 bits (1063), Expect = 0.0
Identities = 1208/1274 (95%), Gaps = 26/1274 (2%)
Strand=Plus/Plus
Query 421 AGTTTTCTTTTTCGGGCTTGATGGGTAAAGAGAATCAGTTGGAGACAACAAATTGTGGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AGTTTTCTTTTTCGGGCTTGATGGGTAAAGAGAATCAGTTGGAGACAACAAATTGTGGAG 426
Query 481 TCAATGATCACGATTGTCCACCCGTCAAGAACGAGGAACTAGCAGCTGAGGCGCGTTATA 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 427 TCAATGATCACGATTGTCCACCCGTCAAGAACGAAGAACTAGCAGCTGAGGCGCGTTATA 486
Query 541 GTACAGACAGTGACTCGGGTTTGCCAACCTGTCGTGTATGCCATTCTGCAGAATCCGACA 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 487 GTACAGACAGTGACTCGGGTTTACCAACCTGTCGTGTATGCCATTCTGCAGAATCTGACA 546
Query 601 GACGAGGAGATACCGCCTTGGGGTTTTTGGGGATTACCCCTCCGGTTCCAGAAGCTCGTA 660
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 547 GACGAGGAGATACTGCCTTGGGGTTTTTGGGGATTACTCCTCCGGTTCCAGAAGCTCGTA 606
Query 661 AAAGCAATGTAGATGGAACCGCTGATGATGTCAGCAAAGCTACAGAGTCTGAGCTGAAGA 720
|||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AAAGCAATACAGACGAAAACGCTGATGATGTCAGCAAAGCTACAGAGTCTGAGCTGAAGA 666
Query 721 ATTCTGTTGTCAAAAGCAATGGAAGGGAATCTGGCTTCATCGAATTAACAAGTCCTGATG 780
||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 667 ATTCTGTCGTCAAAAGCAATGGAAGGGAATCTGGCTTCATCGAAATGACAAGTCCTGATG 726
Query 781 CGGAAGTTTTCATTTGCACAAATGATATAGAAATGGGAATCCAGCAGCATCAGGATGCAT 840
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 727 CGGAAGTTTTCATTTGCACAAATGATATAGAAATGGGAATCCAGCTGCATCAGGATGCAT 786
Query 841 TGCTTGAGCTTGGATGTTCTTGCAAAAACGAGCTTGCTTTGGTACACTACGCTTGCGCGC 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 787 TGCTTGAGCTTGGATGTTCTTGCAAAAACGAGCTTGCTTTGGTACACTACGCTTGCGCAC 846
Query 901 TCAAGTGGTTTCTCAACCATGGATCCACCGTGTGTGAAATCTGTGGACATCCTGCAGAAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TCAAGTGGTTTCTCAACCATGGATCCACCGTGTGTGAAATCTGTGGACATCCTGCAGAAA 906
Query 961 ATATAAAGACTGCTGATTTCAACAAAGTGGTCATTGCCTTGAGAGATTACACAGCAATAA 1020
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 907 ATATAAAGACTGCTGATTTCAACAAAGTGCTCATTGCCTTGAGAGATTACACAGCACTAA 966
Query 1021 GAGAAAGAACTGCTGATGGAGGAGATCAAATCCCTGTATTACCGGTGAATACAGATTCAA 1080
|||||||||| |||||||||||||||| ||||||||||||| |||||| | |||||||||
Sbjct 967 GAGAAAGAACCGCTGATGGAGGAGATCCAATCCCTGTATTAGCGGTGAGTGCAGATTCAA 1026
Query 1081 CCATTGATTCAGATGAAGTTGCTGTCATTCGAAGGCAACGACTTAGTGAGATAACGTCAT 1140
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1027 CCATAGATTCAGATGAAGTTGCTGCCATTCGAAGGCAACGACTTAGTGAGATATCGTCAT 1086
Query 1141 GGTTTGGTCCCCATTCCCTGaacaacaacaacaacaacaaTAGTT-CTG-TTG-C-GGCT 1196
|||||||||||||||||||||||||||||||||| | | ||| | | || | ||||
Sbjct 1087 GGTTTGGTCCCCATTCCCTGAACAACAACAACAATAGTTCT-GTTGCGGCTTCTCAGGCT 1145
Query 1197 ATCCCTGACCAACCTTTAGGTGTTGTGAACTTCGACATCTTACCTATGGAAAACCGTGCA 1256
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct 1146 ATCCCTGACCAACCTTTAGGAGTTGTGAACTTTGACATCTTACCTATGGAAAGCCGTGCA 1205
Query 1257 ACTAAATGGGCTGTGGAAGGTACTGGGATTCTACTTGCTACAGGTTTACTCACTGTTACT 1316
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1206 ACTAAATGGGCTGTGGAAGGTACTGGGATTCTACTTGCTACCGGTTTACTCACTGTTACT 1265
Query 1317 TTGGTCTGGCTCATTGCCCCTCGTGTTGGAAAGAAAACTGCTAGGAGCGGACTTCACATA 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TTGGTCTGGCTCATTGCCCCTCGTGTTGGAAAGAAAACTGCTAGGAGCGGACTTCACATC 1325
Query 1377 CTTCTTGGTGGTCTCTGTGCTTTAACAATAGTCATCTTCTTCAGATTTGTTGTGCTCACT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CTTCTTGGTGGTCTCTGTGCTTTAACAATAGTCATCTTCTTCAGATTTGTTGTGCTCACT 1385
Query 1437 AGAATCAGGTATGGTCCTGCACGCTACTGGGCAATCTTATTCATCTTCTGGTTTCTTGTG 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AGAATCAGGTATGGTCCTGCACGCTACTGGGCAATCTTATTCATCTTCTGGTTTCTTGTG 1445
Query 1497 TTTGGTATTTGGGCTTCTCGTTCTAATGCTTCTCACAATAGCCCTTGAATCCACCatctc 1556
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1446 TTTGGTATTTGGGCTTCTCGTTCTAATGCTTCTCACAATAACCCTTGAATTCACCATCTC 1505
Query 1557 tctcaatctctcatgtctctctatctatctgagtctgtgtattctttctctTGGAGAAAA 1616
|||| | || || |||| |||||||| |||||| ||| |||||||||
Sbjct 1506 TCTC--T-----AT--CT----ATCT----GAGTCTGT--ATTCTT-CTCATGGAGAAAA 1545
Query 1617 ATGTACATTGCTTCATTAAAGAAGAAATAAGCTCATGCTTCATTGAATATATATATGATT 1676
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1546 ATGTACATTGCTTCATTAAAGAA-AAATAAGCTCATGCTTCATTGAATATATATATGATT 1604
Query 1677 CATAATGGTTGGTC 1690
||||||||||||||
Sbjct 1605 CATAATGGTTGGTC 1618
Score = 501 bits (271), Expect = 7e-141
Identities = 344/376 (91%), Gaps = 18/376 (5%)
Strand=Plus/Plus
Query 1 GAATCTAAAACCACTCAGCTCTCCGCACCATGTGAAAGGTTGGTGTAGTGGCAAGAACTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAATCTAAAACCACTCAGCTCTCCGCACCATGTGAAAGGTTGGTGTAGTGGCAAGAACTC 60
Query 61 TTTCGAATCTGAACGCCTTAAGCTCTGAGAGACGAGCATTTTCCAGAAAATTCCCATTAC 120
||||||||||||||||||| ||||| |||| ||||||| || || ||||
Sbjct 61 TTTCGAATCTGAACGCCTT-AGCTCAGAGATACGAGCA--TT--------TT----TTAC 105
Query 121 CTAATCCCCAGGATTCGATGAACCCAGAAATGATGGTTTTCGAAAGGCTCTAGCTTTCTC 180
|||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 106 CTAATCCCCACAATTCCAGGAACCCAGAAATGATGGTTTTCGAAAGGCTCTAGCTTTCTC 165
Query 181 AAATCCAGATTTTGCTGAGGAGCTCGTTGAAAGAATGCAAAATAGACCATCTCTCTCTTG 240
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 166 AAATCGAGATTTTGCTGAGGAGCTCATTGAAAGAATGCAAAATAGACCATCTTTCTCTTG 225
Query 241 TCCTTTGTCTTTCAGATCGTTTCTCTTTCAACGTGATATTAGA-GTACAATACTAGATAC 299
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 226 TCCTTTGTCTTTCAGATCGTTTCTCTTTCAACGTGATATTAGAAG-ACAATACTAGATAC 284
Query 300 CGTGAGGTCCTTTGTATTATTGGACCTTGAGTTGTCTTGTCTAAGTGGGATAACCTTTCT 359
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 285 AGTGAGGTCCTTTGTATTATCGGACCTTGAGTTGTCTTGTTTAAGTGGGATAACCTTT-T 343
Query 360 AGTGAACATTTTCTTG 375
||||||| |||| |||
Sbjct 344 AGTGAACTTTTTTTTG 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63420257925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5