BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63790.1 Length=1317 Score E Sequences producing significant alignments: (Bits) Value Ahg918162 jgi|Araly1|918162|Al_scaffold_0008_2913 1280 0.0 Ahg496566 jgi|Araly1|496566|fgenesh2_kg.8__2382__AT5G63780.1 147 3e-34 > Ahg918162 jgi|Araly1|918162|Al_scaffold_0008_2913 Length=810 Score = 1280 bits (693), Expect = 0.0 Identities = 777/816 (95%), Gaps = 12/816 (1%) Strand=Plus/Plus Query 130 ATGAAGGCGGAGTTGAATTTGCCGGCGGGATTCCGATTTCATCCGACGGACGAAGAGCTT 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAGGCGGAGTTGAATTTGCCGGCGGGATTCCGATTTCATCCGACGGACGAAGAGCTT 60 Query 190 GTCAAGTTCTATCTTTGCCGGAGATGTGCGTCAGAACCGATTAACGTTCCGGTTATCGCA 249 || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 61 GTTAAGTTCTATCTTTGCCGGAGATGCGCGTCGGAACCGATTAACGTTCCGGTTATCGCA 120 Query 250 GAGATTGA-CTTGTACAAATTCAATCCATGGGAGCTTCCAGAAATGGCGTTGTACGGTGA 308 |||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 GAGATTGATCT-GTATAAATTCAATCCATGGGAGCTTCCAGAAATGGCGTTGTACGGAGA 179 Query 309 GAAAGAATGGTACTTCTTCTCGCATAGAGACCGGAAATACCCAAACGGGTCGAGACCAAA 368 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 180 GAAAGAATGGTACTTCTTCTCACATAGAGACCGGAAATACCCAAACGGTTCGAGACCAAA 239 Query 369 CCGGGCAGCTGGAACCGGTTATTGGAAAGCGACTGGAGCTGATAAACCGATCGGAAAACC 428 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 240 CCGGGCAGCTGGAAGCGGTTATTGGAAAGCGACTGGAGCAGATAAACCGATCGGAAAACC 299 Query 429 GAAGACGTTAGGGATTAAGAAAGCACTCGTCTTCTACGCAGGAAAAGCTCCGAAAGGGAT 488 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 300 GAAGACATTAGGGATTAAGAAAGCACTGGTCTTCTACGCAGGAAAAGCTCCGAAAGGGGT 359 Query 489 TAAAACGAATTGGATTATGCACGAGTATCGTCTCGCTAATGTCGATCGATCTGCTTCTAC 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TAAAACGAATTGGATTATGCACGAGTATCGTCTCGCTAATGTCGATCGATCTGCTTCTAC 419 Query 549 CA--A-CAAGAAGAACAACTTAAGACTTGATGATTGGGTTTTGTGTCGGATATACAATAA 605 || | |||||||||||| || |||||||||||||||||||||||||||| |||||||| Sbjct 420 CACCAACAAGAAGAACAATTTGCGACTTGATGATTGGGTTTTGTGTCGGATTTACAATAA 479 Query 606 GAAAGGAACAATGGAGAAGTATT-TACCGGCGGCGGCTGAGAAACCGACGGAAAAGATGA 664 ||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||||| Sbjct 480 GAAAGGAACAATGGAGAAGTATTAT-CCGGCGGCGGATGAGAAACCGACGGCGAAGATGA 538 Query 665 GTACGTCGGACTCAAGATGCTCAAGTCACGTGATTTCACCGGACGTCACGTGTTCTGATA 724 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 539 GTACGTCGGACTCGAGATGCTCAAGTCACGTGATTTCACCGGACGTCACGTGTTCCGATA 598 Query 725 ACTGGGAGGTTGAGAGTGAGCCCAAATGGATTAATCTGGAAGACGCGTTAGAGGCATTTA 784 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 599 ACTGGGAGGTTGAGAGTGAGCCCAAATGGATTAATCTGGAAGACGCGTTAGAGGCGTTTA 658 Query 785 ATGATGACACGTCCATGTTTAGTTCCATTGGTTTGTTGCAAAATGACGCCTTTGTTCCTC 844 |||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 659 ATGA---CACGTCCATGTTTAGTTCCATTGATTTGTTGCAAAATGACGCCTTTGTCCCTC 715 Query 845 AGTTT-CAGTACCAGTCCTCCGATTTCGTCGATTCGTTTCAGGACCCGTTCGAGCAGAAA 903 |||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 716 AGTTCGC-GTACCAGTCCTCCGAGTTCGTCGATTCGTTTCAGGACCCGTTGGAGCAGAAA 774 Query 904 CCGTTCTTGAATTGGAATTTTGCTCCTCAAGGGTAA 939 |||||||||||||||||||||||||||||||||||| Sbjct 775 CCGTTCTTGAATTGGAATTTTGCTCCTCAAGGGTAA 810 > Ahg496566 jgi|Araly1|496566|fgenesh2_kg.8__2382__AT5G63780.1 Length=1618 Score = 147 bits (79), Expect = 3e-34 Identities = 82/83 (99%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 1234 GACCAACCATTATGAATCATATATATATTCAATGAAGCATGAGCTTATTTCTTCTTTAAT 1293 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1618 GACCAACCATTATGAATCATATATATATTCAATGAAGCATGAGCTTATTT-TTCTTTAAT 1560 Query 1294 GAAGCAATGTACATTTTTCTCCA 1316 ||||||||||||||||||||||| Sbjct 1559 GAAGCAATGTACATTTTTCTCCA 1537 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49254808764 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5