BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63990.1 Length=1347 Score E Sequences producing significant alignments: (Bits) Value Ahg496593 jgi|Araly1|496593|fgenesh2_kg.8__2409__AT5G63990.1 2032 0.0 > Ahg496593 jgi|Araly1|496593|fgenesh2_kg.8__2409__AT5G63990.1 Length=1328 Score = 2032 bits (1100), Expect = 0.0 Identities = 1263/1338 (94%), Gaps = 25/1338 (2%) Strand=Plus/Plus Query 21 AGTTGCTTCAGAGTCGCGAGAGGTTTTTCCATTCATATCATAAAAATCGATTCTTTCAGA 80 |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| Sbjct 1 AGTTGCTTCAGAGTCGCGAGAGGTTTTT-CATTCATATCATAAAAATCGATTC-TTGAGA 58 Query 81 GATTTTCTTCTTCAACTTCGTGGTAC-TC-TTT-TGCTTTACCCATTTTTCAATGTCTTA 137 |||||||||||||| |||||| | | || ||| | ||| | || |||||||||||||| Sbjct 59 GATTTTCTTCTTCATCTTCGT-CTTCTTCGTTTCTTCTTCAGCC--TTTTCAATGTCTTA 115 Query 138 CGATGAGATGCTTTCTGCTGCGAAGAAAGCTGTTTCTCTCGCTGCTCGTCTCAGCAACGA 197 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | Sbjct 116 CGATGAGATGCTTTCTGCTGCCAAGAAAGCTGTCTCTCTCGCTGCTCGTCTCAGCAACCA 175 Query 198 AGTGAGGAAATCTCTGTTGGTAACTGACGTTTGGAACAAATCAGATGATAGTCCTGTTAC 257 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 176 AGTGAGGAAATCTCTGTTGGTATCTGACGTTTGGAACAAATCAGATGAGAGTCCTGTTAC 235 Query 258 TGTTGCTGATTATGGTTCGCAGGCGGTGGTTAGCCTTGTACTGGAAAGGGAACTCCAGAA 317 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| Sbjct 236 TGTTGCTGATTATGGTTCGCAGGCCGTGGTTAGCCTTGTACTCGAAAGGGAACTCCTGAA 295 Query 318 TGAACCTGTGTCTTTAGTGGCTGAAGAGGATTCTGGTGAGTTAAGGAAGATTGCTGCTGA 377 |||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 296 TGAACCTGTGTCATTAGTAGCTGAAGAGGATTCTGGTGAGCTAAGGAAGATTGCTGCTGA 355 Query 378 GACCGTTTTGGCTCGTATTACAGAGCTTGTCAAAGATACTCTTGCAAGTGATGAATCATA 437 ||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 356 GACTGTTTTGGCACGTATTACAGAGCTTGTGAAAGATACTCTTGCCAGTGATGAATCATA 415 Query 438 TGCTATTGCTTCTCCTTTGACTTCGGATGATGTGCTCAACGCTATAGATCGTGGTAAATC 497 ||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| Sbjct 416 TGC---TGCTTCTCCTTTGTCTTCCGATGATGTGCTCAACGCTATAGACCGTGGTAAATC 472 Query 498 AGAAGGAGGTCCTAAGGGTCGCCACTGGATCTTGGATCCTATTGGTGGCACTAGAGGATT 557 |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 473 AGAAGGAGGTCCTATGGGTCGCCATTGGATCTTGGATCCTATAGGTGGCACTAGAGGATT 532 Query 558 TATAAGAGGAGAACAATATGCAATAGGATTAGCATTGTTGGTGGAAGGCAAAGTAGTACT 617 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 533 TATAAGAGGAGAACAATATGCAATAGGATTAGCATTGTTGGTGGATGGCAAAGTAGTACT 592 Query 618 AGGTGTAATGGCTTGTCCTAAGCTTCCATTGGCATCAA---CTGCTGGTAATGCACTCAA 674 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 593 AGGTGTAATGGCTTGTCCTAAGCTTCCATTGGCATCAACTGCTGCTGGTAACACACTCAA 652 Query 675 GTCTTTACCTGAAAAAGTTGGTTGCCTTTTCTATGGTTCGGTTGGCAATGGGACTTATGT 734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 GTCTTTACCTGAAAAAGTTGGTTGCCTTTTCTATGGTTCGGTTGGCAATGGGACTTATGT 712 Query 735 CCAGTCTCTCAGTGTCGACTCTCTTCCTGCGAAGGTGGAGGTTAGCAGCATAGATGATCC 794 ||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||||| Sbjct 713 CCAGTCTCTCAGTGTTGACTCTCCTCCTGTGAAGGTGGAGGTAAGCAGCATAGATGATCC 772 Query 795 TGCGAAAGCGAGTTTCTTCGAGTCATACCACACACCTGTCCCCATCCATAACACCATTGC 854 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 CGCGAAAGCGAGTTTCTTCGAGTCATACCACACACCTGTCCCCATCCATAACACCATTGC 832 Query 855 TACGAAATTGGGGATAAAAGAATCTCCAATCAAGATCAACAGCCAGACTAAGTATGCAGC 914 ||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 833 TACGAAACTGGGGATAAAAGAATCGCCAATCAAGATCAACAGTCAGACAAAGTATGCAGC 892 Query 915 TTTATCTAGAGGAGATGGAGAGGTTTACTTGAGGTTTACTCGCAAAGCAAGACCCGAATC 974 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 893 TTTATCTAGAGGAGATGGAGAGGTGTACTTGAGGTTTACTCGCAAAGCAAGACCCGAATC 952 Query 975 AATATGGAATCACGCTGCTGGCTCAATCATTGTTTCAGAAGCAGGAGGGAAAGTGACTGA 1034 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 953 AATATGGAATCACGCTGCTGGCTCAATCATCGTTTCAGAAGCGGGAGGGAAAGTGACTGA 1012 Query 1035 TGCAGCAGGGAATCCATTGGACTTTTCGAAAGGGAAGTATCTTGATTACAAGAGAGGAAT 1094 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 TGCAGCAGGGAATCCGTTGGACTTTTCGAAAGGGAAGTATCTTGATTACAAGAGAGGAAT 1072 Query 1095 CGTCGTTACGACGCAGAAACTGTTGCCAAGGCTTTTAACAGCAGTAAGAGAATCAATTaa 1154 || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 1073 TGTGGTTACGACGCAGAAACTGTTGCCAAGGCTTTTGATAGCAGTAAGAGAATCAATTAA 1132 Query 1155 agaagaagaagaggaagaagaaaaagCTGCTTCTCTAAAACTTCACTAACACGCAACTGT 1214 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1133 AGAAGAAGAAGAGGAAGAAGAAAAAGCAGCTTCTCTGAAACTTCACTAACACGCAACTGT 1192 Query 1215 AATATACTTATTATTGTTGTCTTTGGGTATACTCTGTTGTCTCTGTGTTTTTCACA--GT 1272 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 1193 AATATACTTATTATTGTTGTCTTTGGGTATACTCTGTTGTCT--GTGTTTTTCACACAGT 1250 Query 1273 CTATTTATTGAAAACCAGAAACaaaaaaaaaa----CTCACCTTTGATATATATA-A-GA 1326 |||||||||||||||||||||||||||||||| ||||||||||||||||||| | || Sbjct 1251 CTATTTATTGAAAACCAGAAACAAAAAAAAAAAATACTCACCTTTGATATATATATAAGA 1310 Query 1327 AA-CACTAATTCTCTTTT 1343 || ||||||||||||||| Sbjct 1311 AAACACTAATTCTCTTTT 1328 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50398496274 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5