BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64040.2 Length=854 Score E Sequences producing significant alignments: (Bits) Value Ahg496598 jgi|Araly1|496598|fgenesh2_kg.8__2414__AT5G64040.1 1230 0.0 > Ahg496598 jgi|Araly1|496598|fgenesh2_kg.8__2414__AT5G64040.1 Length=763 Score = 1230 bits (666), Expect = 0.0 Identities = 734/765 (96%), Gaps = 12/765 (2%) Strand=Plus/Plus Query 99 ATCCTCATTCATCTCTAATACTAAAATCTAATCTCTTCCTTGCTCACTCACCAATCAAAC 158 ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1 ATCCTCATTCATCGCTAATACTAAAATCTGATCTCTTCCTTCCTCACTCACCAATCAAAC 60 Query 159 TC-AAAAAACTCTTGAATTTTTCAAGAACAAAAGAAAAAGACATCTTTAATGGCGGCCAT 217 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 TCAAAAAAACTCTTGAATTTTTCAAGAACAAAAGAAAAAGAGATCTTTAATGGCGGCCAT 120 Query 218 GAACTCGAGTGTTCTCACTTGCAGCTACGCAATTGCTGGCTCTGGCTCGGTAGAGCTTAA 277 ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 121 GAACTCGAGTGTTCTCACTTGCAGCTACGCAATTGCTGGTTCTGGCTCAGTAGAGCTAAA 180 Query 278 CCAGAAAGTTGGTTTGGTGAATTCATCAGTTGGGTTTGGTCAGAAGAAACAGATGATTAT 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCAGAAAGTTGGTTTGGTGAATTCATCAGTTGGGTTTGGTCAGAAGAAACAGATGATTAT 240 Query 338 GCCTGTGATCAAAGCTCAACGCGTTGTTGGTGATGATGTTGATGGATCTAATGGAAGACG 397 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 241 GCCTGTGATCAAAGCTCAACGAGTTGTTGGTGATGATGTTGATGGATCTAATGGAAGAAG 300 Query 398 ATCAGCCATGGTTTTCTTAGCAGCTACACTCTTCTCCACTGCTGCTGTTTCTGCTTCTGC 457 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 301 ATCAGCCATGGTTTTCTTAGCAGCTACGCTCTTCTCCACTGCTGCTGTTTCTGCTTCTGC 360 Query 458 TAATGCTGGCGTCATTGACGAATACCTCGAGAGGAGCAAAACCAACAAAGAACTTAATGA 517 ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| Sbjct 361 TAATGCTGGCGTCATCGATGAATACCTCGAGAGGAGCAAAGCCAACAAAGAACTTAATGA 420 Query 518 TAAGAAGAGATTGGCAACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGG 577 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 421 TAAGAAGAGATTGGCAACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTACAATTCGG 480 Query 578 AAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG----T 633 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 481 AAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGT 540 Query 634 TCCATTTATCTCAGAAGATATTG-CTTTGGAATGCGAAGGCAAGGACAAGTACAAGTGTG 692 ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| Sbjct 541 TCCATTTATCTCAGAAGAT-TTGGCTTTGGAATGCGAAGGCAAGGACAAGTACCAGTGTG 599 Query 693 GTTCCAATGTTTTCTGGAAATGGTGAAGAACTTTGTTTGTTTTCATCTATTCTTATATAA 752 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 600 GTTCCAATGTTTTCTGGAAATGGTGAACAACTT-GTTTGTTTTCATCTATTCTTATATAA 658 Query 753 ATCCAACAATGTATCTAT--CTCTCTCT--ATTCATGAAAGTTCTCGCATCCATTTGAAT 808 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 659 ATCCAACAATGTATCTATATCTCTCTCTCTATTCATGAAAGTTCTCGCATCCATTTGAAT 718 Query 809 CTATCAAGCTAAAACTCTATTGAGAGATTAGGATGCATTATTTTG 853 |||||||| |||||||||||| ||||||||||| ||||||||||| Sbjct 719 CTATCAAGTTAAAACTCTATTAAGAGATTAGGAAGCATTATTTTG 763 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31603898193 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5