BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64050.1
Length=2164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496600 jgi|Araly1|496600|fgenesh2_kg.8__2416__AT5G64050.1 3206 0.0
> Ahg496600 jgi|Araly1|496600|fgenesh2_kg.8__2416__AT5G64050.1
Length=2006
Score = 3206 bits (1736), Expect = 0.0
Identities = 1937/2029 (95%), Gaps = 34/2029 (2%)
Strand=Plus/Plus
Query 2 AGTTATGAGGCTTTAATCGAA--T-TTG---TTGCTTTGCTTTGCGACTTTCATCTTTCC 55
||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||
Sbjct 1 AGTTATGAGGCTTTAATCGAATTTATTGCTTTTGCTTTGCTTTGCGACTTTCTTCTTTCC 60
Query 56 -GATTAATCAAATCCTTTTATCCTCTGAAAAATCTCAACTTTCGAAG--AAAACG-AAAA 111
|| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 61 GGA-TAATCAAATCCTTTTATCCTCTGAAAAATCTCAACTTTCGAAGAAAAAACGCAAAA 119
Query 112 TGGCGAGCCTTGTCTACGGGACGCCGTGGCTTAGGGTTAGATCTTTACCGGAGCTTGCTC 171
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 120 TGGCGAGCCTTGTCTACGGGACGCCGTGGCTTAGGATTAGGTCTTTACCGGAGCTTGCTC 179
Query 172 CAGCTTTTCTCAGACGGCGTCAATCTTCTTTATTTTACTGTTCTCGGCGAAGCTTCGCGG 231
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 CAGCTTTTCTCAGACGTCGTCAATCTTCTTTATTTTATTGTTCTCGGCGAAGCTTCGCGG 239
Query 232 TGGTTGCGTGTTCCACTCCAGTCAACAATGGTGGGTCTGTCAGAGTTCGTTTCGCGCCTT 291
||||||||||||| | ||||| | | |||||||||||| |||||||||||||||||||
Sbjct 240 TGGTTGCGTGTTCTTCACCAGTTAGTACTGGTGGGTCTGTTAGAGTTCGTTTCGCGCCTT 299
Query 292 CTCCTACTGGTAATCTCCATGTAGGTGGAGCAAGGACTGCTCTTTTCAACTACTTGTTCG 351
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCCCACTGGTAATCTCCATGTAGGTGGAGCAAGGACTGCTCTTTTCAACTACTTGTTCG 359
Query 352 CGAGGTCTAAAGGAGGGAAATTTGTGCTGAGAATTGAAGATACAGATTTGGAGAGATCAA 411
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 CGAGGTCTAAAGGAGGGAAATTTGTGCTGAGAATTGAAGATACGGATTTGGAGAGATCAA 419
Query 412 CACGTGAATCTGAAGCAGCTGTTCTTCAGGATCTCTCATGGCTTGGTCTTGATTGGGATG 471
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 CACGTGAATCTGAAGCAGCTGTTCTTCAGGATCTCTCATGGCTGGGTCTTGATTGGGATG 479
Query 472 AAGGTCCTGGGGTTAGTGGAGACTTTGGTCCTTATCGGCAATCTGAAAGAAATGCTTTGT 531
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 480 AAGGTCCTGGGGTTAGTGGAGACTTTGGTCCTTATCGACAATCCGAAAGAAATGCTTTGT 539
Query 532 ATAAACAATATGCAGAGAAGCTTTTAGAGTCAGGTCATGTCTATCGATGCTTTTGCTCAA 591
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 ACAAACAATATGCAGAGAAGCTTTTAGAGTCAGGTCATGTCTATCGATGCTTTTGCTCCA 599
Query 592 GTGAGGAACTTGTAAAGATGAAGGAGAATGCAAAGTTGAAACAGTTGCCTCCAGTATATA 651
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 GTGAGGAACTTGTAAAGATGAAGGAGATTGCAAAGTTGAAACAGTTGCCTCCAGTATATA 659
Query 652 CCGGGAAATGGGCAACAGCTTCTGATGCTGAAATAGAGCAAGAGTTAGAAAAGGGAACAC 711
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 CCGGGAAATGGGCAACAGCTTCTGATTCTGAAATAGAGCAAGAGTTAGAAAAGGGAACAC 719
Query 712 CTTTTACTTACCGGTTTCGTGTGCCAAAGGAAGGCTCTTTGAAAATTAATGACCTGATTC 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTTTACTTACCGGTTTCGTGTGCCAAAGGAAGGCTCTTTGAAAATTAATGACCTGATTC 779
Query 772 GTGGCGAGGTCTGTTGGAACTTGGATACTCTTGGGGATTTTGTGGTAATGAGAAGTAATG 831
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 780 GTGGCGAGGTATGTTGGAACTTGGATACTCTTGGAGATTTTGTGGTAATGAGGAGTAATG 839
Query 832 GCCAACCCGTTTACAACTTTTGTGTTACGGTAGATGATGCTACCATGGCTATATCACATG 891
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCCAACCTGTTTACAACTTTTGTGTTACGGTAGATGATGCTACCATGGCTATATCACATG 899
Query 892 TTATAAGGGCTGAAGAACACTTGCCTAATACTTTGAGGCAGGCTCTAATTTACAAGGCTC 951
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 TTATAAGGGCTGAAGAACACTTACCTAATACTTTGAGGCAGGCTCTAATTTACAAGGCTC 959
Query 952 TTAAGTTCCCGATGCCTCAATTTGCACATGTTTCTTTAATTTTAGCTCCGGATAGAAGTA 1011
| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 960 TGGAGTTCCCGATGCCTCAGTTTGCACATGTTTCTTTAATTCTAGCTCCGGATAGAAGTA 1019
Query 1012 AATTATCAAAGCGACATGGGGCAACTTCTGTAGGCCAGTACAGAGAGATGGGATATCTAC 1071
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AACTGTCAAAGCGACATGGGGCAACTTCTGTAGGCCAGTACAGAGAGATGGGATATCTAC 1079
Query 1072 CTCAGGGAATGGTTAACTATTTGGCACTCTTAGGTTGGGGAGACGGGACTGAAAATGAAT 1131
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1080 CTCAGGGAATGGTTAACTATTTGGCACTCTTAGGTTGGGGAGATGGGACTGAAAATGAAT 1139
Query 1132 TCTTCACACTCGAGGATCTTGTTGAAAAATTCTCGATTGAACGTGTCAACAAAAGTGGCG 1191
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1140 TCTTCACACTCGAGGAACTTGTTGAAAAATTCTCGATCGAACGTGTCAACAAAAGTGGTG 1199
Query 1192 CGATTTTTGATTCAACAAAGTTAAGATGGATGAATGGTCAACATCTGAGGGCACTTCCAA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CGATTTTTGATTCAACAAAGTTAAGATGGATGAATGGTCAACATCTGAGGGCACTTCCAA 1259
Query 1252 ATGAGAAACTAACAAAACTTGTTGGTGAGCGATGGAAGAGCGCTGGTATCTTAACAGAAT 1311
| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1260 AGGAAAAACTAACAAAACTTGTTGGTGAGCGATGGAAGAGTGCCGGTATCTTAACAGAAT 1319
Query 1312 CCGAGGGGAGTTTTGTAAATGAAGCTGTCGAGCTTCTCAAGGATGGGATTGAGTTGGTGA 1371
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1320 CCGAGGGGAGTTTTGTAGATGAAGCAGTCGAGCTTCTCAAGGATGGGATTGAGTTGGTGA 1379
Query 1372 CAGATTCAGACAAAGTACTTTTGAACTTGCTTTCATATCCTCTACACGCTACATTGGCTA 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CAGATTCAGACAAAGTACTTTTGAACTTGCTTTCATATCCTCTACACGCTACATTGGCTA 1439
Query 1432 GCCCTGAAGCTAAGCCTGCTGTGGAAGACAAACTTCATGAAGTAGCAGCCAGCCTCATAG 1491
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GCCCTGAAGCTAAGCCTGCCGTGGAAGACAAACTTCATGAAGTAGCAGCCAGCCTCATAG 1499
Query 1492 CTGCTTATGACAGCGGAGAGATTCCAAGCGCTTTAGAAGAAGGACAAGGTGCTTGGCAGA 1551
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CTGCTTATGACAGCGGTGAGATTCCAAGCGCTTTAGAAGAAGGACAAGGTGCTTGGCAGA 1559
Query 1552 AATGGGTGAAAGCCTTTGGCAAATCCTTGAAACGCAAAGGTAAATCACTTTTCATGCCAC 1611
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1560 AATGGGTGAAAGCCTTTGGCAAATCATTGAAACGCAAAGGTAAATCACTTTTCATGCCAC 1619
Query 1612 TACGAGTGTTGTTAACGGGAAAACTCCATGGTCCTGAGATGGGCACCAGTATTGTTCTGA 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TACGAGTGTTGTTAACGGGAAAACTCCATGGTCCTGAGATGGGCACCAGTATTGTTCTGA 1679
Query 1672 TTTACAAAGCTGGAAGTCCTGGTATAGTGGTTCCTCAAGCTGGGTTTGTGTCCATGGAGG 1731
|| |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1680 TTCACAAAGCTGGAAGTCCCGGTATAGTGGTTCCTCAGGCTGGGTTTGTATCCATGGAGG 1739
Query 1732 AACGGTTTAAGATTCTTAGGGAGATAGACTGGGAAGCTTTGAACAAAGATGAGAGTGTGC 1791
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 AACGGTTTAAAATTCTCAGGGAGATAGACTGGGAAGCTTTGAACAAAGATGAGAGTGTGC 1799
Query 1792 CTCTTGAATCTACAGCCACAGTATCAACCTGAGAAAACTCCCCttttttttttttttttt 1851
|||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 1800 CTCTTGAATCTACAGCCACAGTATCAACCTGAGAGAACTCCCCTTTTCTATTTTT----- 1854
Query 1852 ttttCCTTCAATATTT-GGTTAGTTGGTGAGAGAAAGACAGCCCAGAGATTTTGATTCCT 1910
| |||| | ||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1855 ----C-TTCAGT-TTTCGGTTAGTTGGTGAGA-AA-GACAGCCCAGAGATTTTGATTCCT 1906
Query 1911 CGTGCATTTCTTGTTTCCCGAAACAAATGGCACAAAGAAATTTGTAGATTATAATGTATC 1970
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1907 CGTGCATTTCTTGTTTCCCGAAACAAATGGCACAACGAAATTTGTAGATTATAATGTATC 1966
Query 1971 AGCAAAGCAAACTTAGGAACAAACCAGAGAGCTTGTAACATTATCAGGC 2019
||||||| | |||||||||||| |||||||||||||||||||
Sbjct 1967 AGCAAAG--------G-AACAAACCAGAGTGCTTGTAACATTATCAGGC 2006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81436943810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5