BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64120.1 Length=1288 Score E Sequences producing significant alignments: (Bits) Value Ahg496608 jgi|Araly1|496608|fgenesh2_kg.8__2424__AT5G64120.1 1967 0.0 > Ahg496608 jgi|Araly1|496608|fgenesh2_kg.8__2424__AT5G64120.1 Length=1276 Score = 1967 bits (1065), Expect = 0.0 Identities = 1218/1290 (94%), Gaps = 18/1290 (1%) Strand=Plus/Plus Query 1 ACTATAACTTAAACACACACTTCATCTTCTCTAAAACCCTAAAATTTAAACACAAGATGG 60 |||| ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 1 ACTAAAACTTGAACACACACTTCATCATCTCTAAAACCCTAAAATATAAACACAAGATGG 60 Query 61 GTTTGGTTAGATCATTGTGCTTATTAATAACCTTCCTTAATTGTCTCATCATCTCGGTTC 120 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 61 GTTTGGTTAGATCATTGTGCTTATTCATAACCTTCCTTAGTTGTCTCATCATCTCGGTTC 120 Query 121 ATGGCCAAGCCACCGCAAGGCCTGGTCCTGTTTCCGGCACTAGGATTGGGTTTTACTTAA 180 ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| | Sbjct 121 ATGGCCAAGCCACCGGAAGGCCGGGTCCTGTTTCCGGCACAAGGATTGGGTTTTACTTGA 180 Query 181 CTACGTGTCCTAGAGCTGAGACTATTGTCCGAAACGCCGTGAATGCTGGTTTCAGTTCTG 240 | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 181 CCACGTGTCCTAGAGCTGAAACCATTGTCCGAAACGCCGTGAATGCTGGTTTCAGTTCTG 240 Query 241 ACCCCAGAATCGCACCCGGAATACTGAGAATGCATTTCCACGACTGTTTTGTCCAAGGTT 300 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ACCCCAGAATCGCTCCCGGAATACTGAGAATGCATTTCCACGACTGTTTTGTCCAAGGTT 300 Query 301 GTGACGGTTCGATCCTTATATCCGGAGCTAACACCGAGAGAACCGCCGGTCCGAACCTCA 360 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 301 GTGACGGTTCGATCCTGATATCGGGAGCTAACACCGAGAGAACCGCCGGTCCGAACCTCA 360 Query 361 ATCTCCAAGGATTTGAAGTCATAGACAACGCCAAAACGCAGCTCGAAGCCGCGTGTCCTG 420 |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 361 ATCTCCGAGGGTTTGAAGTCATCGACAACGCCAAAACGCAGCTCGAAGCCGCGTGTCCAG 420 Query 421 GAGTTGTCTCTTGTGCTGATATTTTAGCATTAGCCGCTCGTGACACAGTCATTCTCACTC 480 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | Sbjct 421 GAGTTGTCTCTTGTGCTGATATTTTAGCCTTAGCCGCTCGTGACACAGTCGTTCTCACGC 480 Query 481 AAGGAACAGGCTGGCAAGTACCAACGGGACGTAGAGATGGTAGAGTTTCTTTGGCTTCGA 540 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 481 AAGGAACAGGATGGCAAGTACCAACGGGACGTAGAGATGGCCGAGTTTCTTTGGCTTCGA 540 Query 541 ATGCTAACAATCTCCCTGGTCCCCGTGACTCCGTTGCCGTTCAACAACAGAAATTCTCCG 600 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 541 ATGCTAACAATCTCCCCGGTCCACGTGACTCCGTTGCCGTTCAACAACAGAAATTCTCCG 600 Query 601 CCTTGGGACTCAATACTCGTGATCTCGTCGTCCTCGTCGGAGGACACACGATCGGAACAG 660 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTTTAGGACTCAATACTCGTGATCTCGTCGTCCTCGTCGGAGGACACACGATCGGAACAG 660 Query 661 CAGGATGTGGTGTATTCAGGAACAGGCTATTCAATACCACCGGACAAACCGCAGATCCAA 720 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 661 CAGGATGTGGTGTATTCAGGAACAGGCTATTCAACACCACCGGACAACCCGCAGATCCAA 720 Query 721 CCATCGACCCAACATTTTTGGCGCAGCTTCAAACACAATGTCCCCAAAACGGCGACGGTT 780 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 721 CCATCGACCCAACATTTTTGGCGCAGCTTCAAACACAATGTCCCCAAAACGGCGACGCTT 780 Query 781 CAGTGCGCGTGGATCTCGACACCGGAAGCGGAAGCACTTGGGACACTTCTTACTACAACA 840 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 781 CAGTGCGCGTGGATCTCGACACCGGAAGCGGAACCACTTGGGACACTTCATACTACAACA 840 Query 841 ACCTAAGCCGTGGGCGTGGAGTTCTCCAATCCGATCAAGTCCTTTGGACCGATCCAGCCA 900 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 ACCTAAGCCGTGGCCGTGGAGTTCTCCAATCCGATCAAGTCCTTTGGACCGATCCAGCCA 900 Query 901 CTAGACCCATAGTGCAACAATTGATGGCTCCTAGAAGCACCTTCAACGTTGAGTTTGCGA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 CTAGACCCATAGTGCAACAATTGATGGCTCCTAGAAGCACCTTCAACGTTGAGTTTGCGA 960 Query 961 GGTCAATGGTCAGAATGAGTAATATCGGTGTGGTTACCGGAGCTAATGGGGAAATCCGTA 1020 ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 961 GGTCAATGGTCAGGATGAGTAATATCGGTGTGGTTACTGGGGCTAATGGGGAAATCCGTA 1020 Query 1021 GGGTTTGCTCTGCGGTTAATTAATTAACCGATTAGAATCTGTCGTGATAAACTTTCATGA 1080 |||||||||||||||||||||||||||||||||| |||| ||| | | |||| Sbjct 1021 GGGTTTGCTCTGCGGTTAATTAATTAACCGATTAAAATC---CGT--T----T--CATGG 1069 Query 1081 CGCAAAGTACTTGTTTCGAGTGTGGTTTTAATCTGAACAATAAATAAACCAATAGAAAAC 1140 | | ||||||||||||||||||| ||||||| | ||||||||| |||||||||||||| Sbjct 1070 CCCTGAGTACTTGTTTCGAGTGTGATTTTAATTTCAACAATAAACCAACCAATAGAAAAC 1129 Query 1141 GACATACA--AA-GAAAAAA-CCCAAAAGTGGGTTGATGAAAATTGTATCTATAAGGTGT 1196 |||||||| || ||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1130 GACATACATGAAAGAAAAAAACCCAAAAGTGGGTTGATGAAAATTGTATCTATAAG-TGT 1188 Query 1197 TGGTATTCGATTTCTTTTGGTTTTAGTTaaaaaaaaCTGTAATGTCTTCACAAAAATATT 1256 ||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||| | Sbjct 1189 TGGTATTCGATTTCTTTTGGTTTTAATTAATAAAA--TGTAATGTCTTCACAAAAATAGT 1246 Query 1257 ATAATGAGTTTGGTCCTAGTTTGGATTCTT 1286 |||||||||||||||||| ||||| ||||| Sbjct 1247 ATAATGAGTTTGGTCCTACTTTGGCTTCTT 1276 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48149244171 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5