BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64250.2
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496627 jgi|Araly1|496627|fgenesh2_kg.8__2443__AT5G64250.2 2117 0.0
Ahg951248 jgi|Araly1|951248|scaffold_803135.1 1744 0.0
> Ahg496627 jgi|Araly1|496627|fgenesh2_kg.8__2443__AT5G64250.2
Length=1476
Score = 2117 bits (1146), Expect = 0.0
Identities = 1377/1482 (93%), Gaps = 42/1482 (3%)
Strand=Plus/Plus
Query 66 ATAGAGTGGAGTGATGTAGTATGTGACGAAAAGCTTCGAAATGTGTTCGTCATTGCTTAG 125
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 27 ATAGAGTGGAGTGATGTAGTATGTGACGAAAAGCTTCGCAATGTGTTTGTCATCGCTTA- 85
Query 126 AAAGATCGACACAAAATTAT--TTTTTATCTATaaaaaaaGGTAGCCAAGT-AAAATTCG 182
||||||||| |||||||||| |||| || || ||||||| | |||||| ||||||||
Sbjct 86 AAAGATCGAAACAAAATTATAATTTTCATATAGAAAAAAA---ACCCAAGTAAAAATTCG 142
Query 183 ATTACGACTCTGGtttttttttGTATAAAACG-A-AGATGTGAAGA-GTGAAGACCGAGA 239
||||||||||| |||||||||| | | | | | | ||||| | ||| || ||||
Sbjct 143 ATTACGACTCT-GTTTTTTTTTTTTTTTTGGGTATA-AAACGAAGATGAGAACACTGAGA 200
Query 240 GAGATTTATAGCAGAGGAAAGTGAAATCATGAAAGGGATTCTAGGGTTTGAATACGGGAT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 201 GAGATTTATAGCAGAGGAAAGTGAAATCATGAAAGGGATTCTAGGGTTTGAACACGGGAT 260
Query 300 AGTTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCCGTCGCTAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 261 AGTTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCAGTCGCTAA 320
Query 360 TGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGGAGTGTCCTGATTACTTGAGAGA 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TGCCGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGGAGTGTCCTGATTACTTGAGAGA 380
Query 420 GCTTATAAGAAAGACAAAGACATTGACAGAGAAACCATTTGGGATCGGTGTTGTTCTTGC 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 381 GCTTATAAGAAAGACAAAGACATTGACAGACAAACCATTTGGGATCGGTGTTGTTCTTGC 440
Query 480 GTTTCCTCATGATTTGAACATTAAGACAATCTTAGAAGAGAAAGTGGCTGTCTTGCAGCT 539
||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||
Sbjct 441 GTTTCCTCATGATTTGAACATTAAGGCAATCCTAGAAGAGGAAGTTGCTGTCTTGCAGCT 500
Query 540 TTATTGGGGTGATTGTTCACAGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGT 599
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 501 TTATTGGGGTGATTGTTCACAGGAGCTTGTGGATGATGCTCACCGTGCCGGTCTCAAAGT 560
Query 600 TATTCCTCAGGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGC 659
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 TGTTCCTCAGGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGC 620
Query 660 CATTATTGTCCAAGGGCGTGAAGCAGGTGGGCATGTTATTGGCAAGGATGGTCTCTTTTC 719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CATTATTGTCCAAGGGCATGAAGCAGGTGGGCATGTTATTGGCAAGGATGGTCTCTTTTC 680
Query 720 ATTGTTGCCAAGAGTGGTGGATTTAGTTGGGGAACGCGATATTCCCGTTATTGCTGCTGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 681 ATTGTTGCCAAGAGTGGTGGATTTAGTTGGGGAACGCGATATTCCCGTTATCGCTGCCGG 740
Query 780 AGGAATTGTGGATGGACGCGGTTATGTTGCAGCTTTGTCACTTGGGGCTCAAGGGGTCTG 839
|||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 741 AGGAATTGTGGATGCACGCGGTTATGTCGCAGCCTTGTCACTTGGTGCTCAAGGGGTCTG 800
Query 840 TCTAGGCACAAGATTTGTGGCGACTCATGAAAGCTATGCACACCCAATATACAAAAGGAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TCTAGGCACAAGATTTGTGGCGACTCATGAAAGCTATGCACACCCAATATACAAAAGGAA 860
Query 900 GTTGATTGAATATGAAAAAACCGAATACACGGATGTATTTGGAAGAGCAAGGTGGCCTGG 959
|||| |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 861 GTTGGTTGAATATGAAAAAACAGAATACACAGATGTGTTTGGAAGAGCAAGGTGGCCTGG 920
Query 960 TGCGCCTCAACGTGTTCTGGAGACGCCTTTCTTTGATGACTGGAGGTCTCTTCCGGCTCA 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 921 TGCGCCTCAACGTGTTCTGGAGACACCTTTCTTTGATGACTGGAGGTCTCTTCCGGCTGG 980
Query 1020 TGAGAATGAAGTTAACCAACCTATTATTGGACGTTCCACCATACATGGCGTTGAAAAGGA 1079
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 981 TGAGAATGAAGTTAATCAACCTGTTATTGGACGTTCCACCATACATGGCGTTGAAAAGGA 1040
Query 1080 GATAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACAGGCGACTTAGAGAGTAT 1139
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1041 GATAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACGGGCGACTTAGAGAGTAT 1100
Query 1140 GGCTATGTATGCAGGCCAAAGCGTAGGCCTTATCAAGGAGATTTTACCGGCTGGAGAGGT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GGCTATGTATGCAGGCCAAAGCGTAGGCCTTATCAAGGAGATTTTACCGGCTGGAGAGGT 1160
Query 1200 AGTGAAAAGTCTTGTGGAAGAAGCTCAGGCTCTGATCCTCCAAAAGTTCAACAATGCTAC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 AGTGAAAAGTCTTGTGGAAGAAGCTCAGGCTCTGATCCTCCAAAAGTTCAACAATGCTAC 1220
Query 1260 TACTACATGATGCAGTCCCAGCCTCAAATCATGAGAAAACATAAACTTTACTGCTTTTGG 1319
||| | ||||||||| | |||||||||||||||| || |||||||||||||||||||||
Sbjct 1221 TAC-A--TGATGCAGTGC-AGCCTCAAATCATGAGCAACCATAAACTTTACTGCTTTTGG 1276
Query 1320 AATCGGGATGAAAATAGTCTCATCTAATGTAAATAAGGTACATAAACTTCTGTATCTCTC 1379
|||||| |||| |||||||||||||||||||| | | || || | || |
Sbjct 1277 AATCGG-ATGAGAATAGTCTCATCTAATGTAA-T--G-TA--TA---T-CT-T------- 1317
Query 1380 GTGTTGTTTTCAACTAGAAAAATTGTGTCCATCATGTGTAATCCAG-CAA-TAGACCTTG 1437
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 1318 GTGTTGTTTTCAACTAGAAAAATTGTGTCCATCATGTGTAATCCATTCCTCTT-ACCTTG 1376
Query 1438 TGTATTGGATTAAGTATACTTCTTATGGTTGTTTGTTTCCTGTGAAACTTTCCACACAT- 1496
|||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1377 -GTATTGAATTAAGTATACTTCTTATGGTTGTTTGTTTCCAGTGAAACTTCCCACACATC 1435
Query 1497 TTCA-TTTCATTTTAAATTTCTTAGCGAATCAATTATTTCAT 1537
|| | |||||| |||||||||||||||||||||| |||||||
Sbjct 1436 TT-AGTTTCATATTAAATTTCTTAGCGAATCAATCATTTCAT 1476
> Ahg951248 jgi|Araly1|951248|scaffold_803135.1
Length=1047
Score = 1744 bits (944), Expect = 0.0
Identities = 1016/1051 (97%), Gaps = 4/1051 (0%)
Strand=Plus/Plus
Query 242 GATTTATAGCAGAGGAAAGTGAAATCATGAAAGGGATTCTAGGGTTTGAATACGGGATAG 301
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GATTTATAGCAGAGGAAAGTGAAATCATGAAAGGGATTCTAGGGTTTGAACACGGGATAG 60
Query 302 TTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCCGTCGCTAATG 361
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCAGTCGCTAATG 120
Query 362 CAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGGAGTGTCCTGATTACTTGAGAGAGC 421
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGGAGTGTCCTGATTACTTGAGAGAGC 180
Query 422 TTATAAGAAAGACAAAGACATTGACAGAGAAACCATTTGGGATCGGTGTTGTTCTTGCGT 481
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 TTATAAGGAAGACAAAGACATTGACAGACAAACCATTTGGGATCGGTGTTGTTCTTGCGT 240
Query 482 TTCCTCATGATTTGAACATTAAGACAATCTTAGAAGAGAAAGTGGCTGTCTTGCAGCTTT 541
||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 241 TTCCTCATGATTTGAACATTAAGGTAATCTTAGAAGAGAAAGTTGCTGTGTTGCAGCTTT 300
Query 542 ATTGGGGTGATTGTTCACAGGAGCTTGTGGATGATGCTCACTTTGCCGGTGTCAAAGTTA 601
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 301 ATTGGGGTGATTGTTCACAGGAGCTTGTGGATGATGCTCACCGTGCCGGTCTCAAAGTTG 360
Query 602 TTCCTCAGGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCCTCAGGTGGGGAATGTCGAAGAAGCTAGAAAGGCTGTTGCTGTAGGAGTAGACGCCA 420
Query 662 TTATTGTCCAAGGGCGTGAAGCAGGTGGGCATGTTATTGGCAAGGATGGTCTCTTTTCAT 721
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTATTGTCCAAGGGCATGAAGCAGGTGGGCATGTTATTGGCAAGGATGGTCTCTTTTCAT 480
Query 722 TGTTGCCAAGAGTGGTGGATTTAGTTGGGGAACGCGATATTCCCGTTATTGCTGCTGGAG 781
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 481 TGTTGCCAAGAGTGGTGGATTTAGTTGGGGAACGCGATATTCCCGTTATCGCTGCCGGAG 540
Query 782 GAATTGTGGATGGACGCGGTTATGTTGCAGCTTTGTCACTTGGGGCTCAAGGGGTCTGTC 841
|||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 541 GAATTGTGGATGCACGCGGTTATGTCGCAGCCTTGTCACTTGGTGCTCAAGGGGTCTGTC 600
Query 842 TAGGCACAAGATTTGTGGCGACTCATGAAAGCTATGCACACCCAATATACAAAAGGAAGT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TAGGCACAAGATTTGTGGCGACTCATGAAAGCTATGCACACCCAATATACAAAAGGAAGT 660
Query 902 TGATTGAATATGAAAAAACCGAATACACGGATGTATTTGGAAGAGCAAGGTGGCCTGGTG 961
|| |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 661 TGGTTGAATATGAAAAAACAGAATACACAGATGTGTTTGGAAGAGCAAGGTGGCCTGGTG 720
Query 962 CGCCTCAACGTGTTCTGGAGACGCCTTTCTTTGATGACTGGAGGTCTCTTCCGGCTCATG 1021
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 721 CGCCTCAACGTGTTCTGGAGACACCTTTCTTTGATGACTGGAGGTCTCTTCCGGCTGGTG 780
Query 1022 AGAATGAAGTTAACCAACCTATTATTGGACGTTCCACCATACATGGCGTTGAAAAGGAGA 1081
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGAATGAAGTTAATCAACCTGTTATTGGACGTTCCACCATACATGGCGTTGAAAAGGAGA 840
Query 1082 TAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACAGGCGACTTAGAGAGTATGG 1141
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 841 TAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACGGGCGACTTAGAGAGTATGG 900
Query 1142 CTATGTATGCAGGCCAAAGCGTAGGCCTTATCAAGGAGATTTTACCGGCTGGAGAGGTAG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTATGTATGCAGGCCAAAGCGTAGGCCTTATCAAGGAGATTTTACCGGCTGGAGAGGTAG 960
Query 1202 TGAAAAGTCTTGTGGAAGAAGCTCAGGCTCTGATCCTCCAAAAGTTCAACAATGCTACTA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGAAAAGTCTTGTGGAAGAAGCTCAGGCTCTGATCCTCCAAAAGTTCAACAATGCTACTA 1020
Query 1262 CTACATGATGCAGTCCCAGCCTCAAATCATG 1292
| | ||||||||| | ||||||||||||||
Sbjct 1021 C-A--TGATGCAGTGC-AGCCTCAAATCATG 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5