BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64260.1 Length=1388 Score E Sequences producing significant alignments: (Bits) Value Ahg951254 jgi|Araly1|951254|scaffold_803141.1 1461 0.0 Ahg918217 jgi|Araly1|918217|Al_scaffold_0008_2968 1210 0.0 Ahg487757 jgi|Araly1|487757|fgenesh2_kg.6__891__AT5G09440.1 429 3e-119 > Ahg951254 jgi|Araly1|951254|scaffold_803141.1 Length=959 Score = 1461 bits (791), Expect = 0.0 Identities = 903/958 (94%), Gaps = 4/958 (0%) Strand=Plus/Plus Query 35 TATAACTACCCTTCTCAATGGCTTCTAATTACCGTTTTGCCATCTTCCTCACTCTCTTTT 94 |||| || |||||||||||||||| ||||||||||||||||||||||||||||||| | | Sbjct 4 TATATCTGCCCTTCTCAATGGCTTTTAATTACCGTTTTGCCATCTTCCTCACTCTCCTCT 63 Query 95 TCGCCACCGCT-GG-TTTCTCCGCCGCCGCGTTGGTCGAGGAGCAGCCGCTTGTTATGAA 152 |||||| || | || ||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 64 TCGCCATCG-TCGGCTTT-TCCGCCGCCGCGTTGGTCGAGGAGCAGCCGCTTGTTCTGAA 121 Query 153 ATACCACAACGGAGTTCTGTTGAAAGGTAACATCACAGTCAATCTCGTATGGTACGGGAA 212 |||||||||||||||||| ||||||||||||||||| || |||||| | ||||||||||| Sbjct 122 ATACCACAACGGAGTTCTCTTGAAAGGTAACATCACCGTTAATCTCATCTGGTACGGGAA 181 Query 213 ATTCACACCGATCCAACGGTCCGTAATCGTCGATTTCATCCACTCGCTAAACTCCAAAGA 272 ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| Sbjct 182 ATTCACACCGATCCAACGGTCCGTAATCGTCGACTTCATCCGCTCGCTCAACTCCAAAGA 241 Query 273 CGTTGCATCTTCCGCCGCAGTTCCTTCCGTTGCTTCGTGGTGGAAGACGACGGAGAAATA 332 ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 242 CGTTGCATCCTCCGCCGCAGTTCCTTCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATA 301 Query 333 CAAAGGTGGCTCTTCAACACTCGTCGTCGGGAAACAGCTTCTACTCGAGAACTATCCTCT 392 |||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 302 CAAAGGCGGATCCTCAACACTCGTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCT 361 Query 393 CGGAAAATCTCTCAAAAATCCTTACCTCCGTGCTTTATCCACCAAACTTAACGGCGGTCT 452 |||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 362 CGGAAAATCTCTAAAAAATCCTCACCTCCGTGCTTTATCCACAAAACTTAACGGCGGTCT 421 Query 453 CCGTTCCATAACCGTCGTTCTAACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAG 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 CCGTTCCATAACCGTCGTTCTAACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAG 481 Query 513 CCGGTGCGGGACTCACGGATCCTCCGGTTCGAATCCCCGTCGCGCAGCTAACGGCGCGGC 572 ||||||||| ||||||||||||||| | ||||| || ||||||||||||||||||||||| Sbjct 482 CCGGTGCGGCACTCACGGATCCTCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCGGC 541 Query 573 TTACGTATGGGTCGGGAACTCCGAGACGCAGTGCCCTGGATATTGCGCGTGGCCGTTTCA 632 |||||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||||| Sbjct 542 TTACGTCTGGGTCGGGAACTCCGAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCA 601 Query 633 CCAGCCGATTTACGGACCACAAACGCCGCCGTTAGTAGCGCCTAACGGTGACGTTGGAGT 692 ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 602 CCAACCGATTTACGGACCACAAACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGT 661 Query 693 TGACGGAATGATTATAAACCTTGCCACACTTCTAGCTAACACCGTGACGAATCCGTTTAA 752 ||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 662 TGACGGAATGATTATAAACCTCGCCACACTTCTCGCTAACACCGTCACCAATCCGTTTAA 721 Query 753 TAACGGATATTACCAAGGCCCACCAACTGCACCGCTTGAAGCTGTGTCTGCTTGTCCTGG 812 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 722 CAACGGATATTACCAAGGCCCACCAACTGCACCGCTTGAAGCTGTCTCCGCTTGTCCTGG 781 Query 813 TATATTCGGGTCAGGTTCTTATCCGGGTTACGCGGGTCGGGTACTTGTTGACAAAACAAC 872 ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 782 CATATTCGGGTCGGGTTCTTACCCGGGTTACGCGGGTCGAGTACTTGTTGACAAAACAAC 841 Query 873 CGGGTCTAGTTACAACGCTCGTGGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTG 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 CGGGTCTAGTTACAACGCTCGTGGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTG 901 Query 933 GGATCCGCAGAGTTCGACGTGCAAGACTCTGGTTTGATCCAAGGGATGTGAGTAAGAC 990 |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| Sbjct 902 GGATCCGCAGAGTTTGACGTGTAAGACTCTGGTTTGATCTAAGGGATGTGAGTAAGAC 959 > Ahg918217 jgi|Araly1|918217|Al_scaffold_0008_2968 Length=858 Score = 1210 bits (655), Expect = 0.0 Identities = 749/795 (94%), Gaps = 4/795 (1%) Strand=Plus/Plus Query 179 GTAACATCACAGTCAATCTCGTATGGTACGGG-AAATTCACACCGATCCAACGGTCCGTA 237 |||||||||| || |||||| | ||||||||| ||||||||||| || |||||||||||| Sbjct 64 GTAACATCACCGTTAATCTCATCTGGTACGGGAAAATTCACACCTATTCAACGGTCCGTA 123 Query 238 ATCGTCGATTTCATCCACTCGCTAAACTCC-AAAGACGTTGCATCTTCCGCCGCAGTT-C 295 |||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||| | Sbjct 124 ATCGTCGATTTCATCCGCTCGCTCAACTCCAAAAGACGTTGCATCCTCCGCCGCAGTTCC 183 Query 296 CTT-CCGTTGCTTCGTGGTGGAAGACGACGGAGAAATACAAAGGTGGCTCTTCAACACTC 354 ||| |||| || |||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 184 CTTCCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATACAAAGGCGGATCCTCAACACTC 243 Query 355 GTCGTCGGGAAACAGCTTCTACTCGAGAACTATCCTCTCGGAAAATCTCTCAAAAATCCT 414 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 244 GTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCTCGGAAAATCTCTAAAAAATCCT 303 Query 415 TACCTCCGTGCTTTATCCACCAAACTTAACGGCGGTCTCCGTTCCATAACCGTCGTTCTA 474 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 304 CACCTCCGTGCTTTATCCACAAAACTTAACGGCGGTCTCCGTTCCATAACCGTCGTTCTA 363 Query 475 ACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGGGACTCACGGATCC 534 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 364 ACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGGCACTCACGGATCC 423 Query 535 TCCGGTTCGAATCCCCGTCGCGCAGCTAACGGCGCGGCTTACGTATGGGTCGGGAACTCC 594 ||| | ||||| || ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 424 TCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCGGCTTACGTCTGGGTCGGGAACTCC 483 Query 595 GAGACGCAGTGCCCTGGATATTGCGCGTGGCCGTTTCACCAGCCGATTTACGGACCACAA 654 ||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 484 GAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCACCAACCGATTTACGGACCACAA 543 Query 655 ACGCCGCCGTTAGTAGCGCCTAACGGTGACGTTGGAGTTGACGGAATGATTATAAACCTT 714 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 ACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGTTGACGGAATGATTATAAACCTC 603 Query 715 GCCACACTTCTAGCTAACACCGTGACGAATCCGTTTAATAACGGATATTACCAAGGCCCA 774 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 604 GCCACACTTCTCGCTAACACCGTCACGAATCCGTTTAATAACGGATATTACCAAGGCCCA 663 Query 775 CCAACTGCACCGCTTGAAGCTGTGTCTGCTTGTCCTGGTATATTCGGGTCAGGTTCTTAT 834 |||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| Sbjct 664 GCAACTGCACCGCTTGAAGCTGTCTCCGCTTGTCCTGGCATATTCGGGTCGGGTTCTTAC 723 Query 835 CCGGGTTACGCGGGTCGGGTACTTGTTGACAAAACAACCGGGTCTAGTTACAACGCTCGT 894 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 724 CCGGGTTACGCGGGTCGAGTACTTGTTGACAAAACAACCGGGTCTAGTTACAACGCTCGT 783 Query 895 GGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTGGGATCCGCAGAGTTCGACGTGC 954 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 784 GGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTGGGATCCGCAGAGTTTGACGTGT 843 Query 955 AAGACTCTGGTTTGA 969 ||||||||||||||| Sbjct 844 AAGACTCTGGTTTGA 858 > Ahg487757 jgi|Araly1|487757|fgenesh2_kg.6__891__AT5G09440.1 Length=1134 Score = 429 bits (232), Expect = 3e-119 Identities = 476/588 (81%), Gaps = 40/588 (7%) Strand=Plus/Plus Query 172 TTGAAAGGTAACATCACAGTCAATCTCGTATGGTACGGGAAATTCACACCGATCCAACGG 231 |||||||| |||||||| |||||||| | |||||||| |||||||| || ||||||||| Sbjct 159 TTGAAAGGAAACATCACTCTCAATCTCATTTGGTACGGAAAATTCACCCCAATCCAACGG 218 Query 232 TCCGTAATCGTCGATTTCATCCACTCGCTAAACTCCAAAGACGTTGCATCTTCCGCCGCA 291 |||||||||||||||||||||| ||| || || | | || | || |||||||| Sbjct 219 TCCGTAATCGTCGATTTCATCCGCTC--TA---TC-A--G---TTCCGTCG-CCGCCGCA 266 Query 292 ---GTTCCTTCCGTTGCTTCGTGGTGGAAGACGACGGAGAAATACAAA---GGTGGCTCT 345 | ||| ||||| || |||||||||||||| |||||||| |||||| |||| ||| Sbjct 267 AAAGGTCCCTCCGTCGCGTCGTGGTGGAAGACTACGGAGAAGTACAAACAAGGTG--TCT 324 Query 346 TCAACACTCGTCGTCGGGAAACAGCTTCTACTCGAGAACTATCCTCTCGGAAAATCTCTC 405 |||| || |||||||| |||||||| || || |||||||| |||||||||||||| || Sbjct 325 -CAACTCTTGTCGTCGGTAAACAGCTCCTCCTTGAGAACTACCCTCTCGGAAAATCCCT- 382 Query 406 AAAAATCC-TTACCTCCGTGCTTTATCCACCAAACTTAACGGCGGTC-T-C-CGTTCCAT 461 ||| | || |||||| |||||| |||| | |||||||||||||||| | | || || || Sbjct 383 AAAGAGCCCTTACCTTCGTGCTCTATCAAGCAAACTTAACGGCGGTGGTGCTCGGTCAAT 442 Query 462 AACCGTCGTTCTAACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGG 521 |||||||||| ||||||||||||| || |||||||| || ||||||||| ||||||||| Sbjct 443 AACCGTCGTTTTAACGGCGAAAGACGTCACCGTCGAGGGACTCTGTATGAACCGGTGCGG 502 Query 522 GACTCACGGATCCTCCGGTTCGAATCCCCGTCGCGCAGCTAACGGCGCG-GCTTACGTAT 580 ||||||||| || | | | | | || | | | |||| | | | |||||||| | Sbjct 503 GACTCACGGGTCAAA-G-T-C-A--C---GTT-C-C-GTTAACAGTG-GAGCTTACGTGT 549 Query 581 GGGTCGGGAACTCCGAGACGCAGTGCCCTGGATATTGCGCGTGGCCGTTTCACCAGCCGA 640 ||||||| ||||| || |||||||| ||||| || ||||||||||||||||| ||||| | Sbjct 550 GGGTCGGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGTTTCATCAGCCTA 609 Query 641 TTTACGGACCACAAACGCCGCCGTTAGTAGCGCCTAACGGTGACGTTGGAGTTGACGGAA 700 | |||||||| || || ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 610 TCTACGGACCTCAGACCCCGCCGTTAGTCGCGCCTAACGGTGACGTCGGAGTCGACGGAA 669 Query 701 TGATTATAAACCTTGCCACACTTCTAGCTAACACCGTGACGAATCCGT 748 ||||||||||||| || || ||||| | ||||||||| |||||||||| Sbjct 670 TGATTATAAACCTCGCGACTCTTCTTGTTAACACCGTTACGAATCCGT 717 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51878913690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5