BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64300.1 Length=2059 Score E Sequences producing significant alignments: (Bits) Value Ahg496632 jgi|Araly1|496632|fgenesh2_kg.8__2448__AT5G64300.1 2948 0.0 Ahg932206 jgi|Araly1|932206|scaffold_400194.1 377 1e-103 > Ahg496632 jgi|Araly1|496632|fgenesh2_kg.8__2448__AT5G64300.1 Length=1978 Score = 2948 bits (1596), Expect = 0.0 Identities = 1784/1873 (95%), Gaps = 19/1873 (1%) Strand=Plus/Plus Query 1 AAATTTTTGATTTTGCGATAAGGGTTTTTCTTAATTTCGTCTACGGATATAGAAAATGTC 60 ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAATTTTCGATTTTGTGACAAGGGTTTTTCTTAATTTCGTCTACGGATATAGAAAATGTC 60 Query 61 TTCCATCAATTTATCCTCATCATCTCCTTCCACCATCTCTCTTTCCCGCTCAAGACTAAG 120 |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 61 TTCCATCAATCTATCCTCATCATCTCCTTCCACCATATCTCTTTCCCGCTCAAGACTAAG 120 Query 121 CCAAAGCTCTACTACATTACTCCATGGACTACATCGTGTTACTTTACCATCTAACCATCC 180 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 121 CCGAAGCTCTACTACATTACTCCATGGACTACACCGTGTTACTTTACCATCTAACCATCC 180 Query 181 ATTGTCAACCTTTTCCATTAAAACCAATACTGGAAAAGTTAAGGCTGCAGTGATCTCTAG 240 | |||| ||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 181 A---TCAAAGTTTTCCATTAAAA-C--TACTGGAAAAGTTAAGGCTGCAGTGATCTCTAG 234 Query 241 AGAAGATGATCTGCTCTCATTCACCAACGGAAACACTCCTCTCTCAAATGGGTCTCTCAT 300 |||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| Sbjct 235 AGAAGATGATCTGCTCTCATTCACCAACGGAAACGCTCCTCTCTCAAATGGTTTTCTCAT 294 Query 301 TGATGATCGGACCGAAGAGCCATTAGAGGCTGATTCGGTTTCACTTGGAACACTTGCTGC 360 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 295 TGATGATCGGACTGAAGAGCCATTAGAGGCTGATTCAGTTTCACTTGGAACACTTGCTGC 354 Query 361 TGATTCTGCTCCTGCACCAGCCAATGGTTTTGTTGCTGAAGATGATGACTTTGAGTTGGA 420 ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 355 AGATTCAGCTCCTGCACCAGCCAATGGTTTTGTTACTGAAGATGATGACTTTGAGTTGGA 414 Query 421 TTTACCAACTCCTGGTTTCTCTTCTATCCCTGAGGCCATTGAAGATATACGCCAAGGAAA 480 ||| |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 415 TTTGCCAACTCCAGGTTTCTCTTCTATCCCTCAGGCCATTGAAGACATACGCCAAGGAAA 474 Query 481 GCTTGTGGTGGTTGTGGATGATGAAGATAGGGAAAATGAAGGGGATTTGGTGATGGCTGC 540 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 475 GCTTGTGGTGGTTGTGGATGATGAAGATAGAGAAAATGAAGGCGATTTGGTGATGGCTGC 534 Query 541 TCAGTTAGCAACACCTGAAGCTATGGCTTTTATTGTGAGACATGGAACTGGGATAGTTTG 600 ||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 535 TCAATTGGCAACACCTGAAGCTATGGCTTTTATTGTGAAACATGGAACTGGGATAGTTTG 594 Query 601 TGTGAGCATGAAAGAAGATGATCTCGAGAGGTTGCACCTTCCTCTAATGGTGAATCAGAA 660 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 595 TGTGAGCATGAAAGAAGATGATCTCGAGAGATTGCACCTTCCTCTAATGGTGAATCAGAA 654 Query 661 GGAAAACGAAGAAAAGCTCTCTACTGCATTTACAGTGACTGTGGATGCAAAACATGGTAC 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 GGAAAACGAAGAAAAGCTCTCTACTGCATTTACAGTGACTGTGGATGCAAAACATGGTAC 714 Query 721 AACAACGGGAGTATCAGCTCGTGACAGGGCAACAACCATATTGTCTCTTGCATCAAGAGA 780 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 715 AACAACAGGAGTATCAGCTCGTGACAGGGCAACAACGATATTGTCTCTTGCATCAAGAGA 774 Query 781 TTCAAAGCCTGAGGATTTCAATCGTCCAGGTCATATCTTCCCACTGAAGTATCGGGAAGG 840 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 775 TTCAAAGCCTGAGGATTTCAACCGTCCAGGTCATATCTTCCCGCTGAAGTATCGGGAAGG 834 Query 841 TGGGGTTCTGAAAAGGGCTGGACACACTGAAGCATCTGTTGATCTCACTGTTTTAGCTGG 900 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 835 CGGGGTTCTGAAAAGGGCTGGCCACACTGAAGCATCTGTTGATCTTACTGTTTTAGCTGG 894 Query 901 ACTGGATCCTGTTGGAGTACTTTGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 ACTGGATCCTGTTGGAGTACTTTGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATT 954 Query 961 ACCAAAACTTCGTGAATTTGCCGCCGAGAACAACCTGAAAGTTGTTTCCATCGCAGATTT 1020 |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| Sbjct 955 ACCAAAACTTCGTGAATTTGCCGCTGAGAATAACCTGAAAATTGTTTCCATCGCAGATTT 1014 Query 1021 GATCAGGTATAGAAGAAAGAGAGATAAATTAGTGGAACGTGCTTCTGCGGCTCGGATCCC 1080 |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 1015 GATCAGATATAGAAGAAAGAGAGATAAATTAGTGGAACGTTCTTCTGCTGCTCGGATCCC 1074 Query 1081 AACAATGTGGGGACCTTTCACTGCTTACTGCTATAGGTCCATATTAGACGGAATAGAGCA 1140 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1075 AACAATGTGGGGACCTTTCACTGCTTACTGCTATAGGTCCATACTAGACGGAATAGAGCA 1134 Query 1141 CATAGCAATGGTTAAGGGTGAGATTGGTGACGGTCAAGACATTCTCGTGAGGGTTCATTC 1200 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1135 CATAGCAATGGTTAAGGGTGAGATTGGTGACGGTCAAGACATTCTTGTGAGGGTTCATTC 1194 Query 1201 TGAATGTCTAACAGGGGACATATTTGGGTCTGCAAGGTGTGATTGCGGGAACCAGCTAGC 1260 ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1195 TGAATGTCTCACAGGAGACATATTTGGGTCTGCAAGGTGCGATTGCGGGAACCAGCTAGC 1254 Query 1261 ACTCT-CGATGCAGCAGATCGAGGCTACTGGTCGCGGTGTGCTGGTTTACCTACGTGGAC 1319 ||| | | ||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1255 ACT-TGCAATGCAGCAGATAGAGGCTACTGGTCGTGGTGTGCTGGTTTACCTACGTGGAC 1313 Query 1320 ATGAAGGAAGAGGGATCGGTTTAGGACACAAGCTTCGAGCTTACAATCTGCAAGATGCTG 1379 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1314 ATGAAGGAAGAGGGATCGGTTTAGGACACAAGCTTCGAGCTTACAATCTACAAGATGCTG 1373 Query 1380 GTCGAGACACGGTTGAAGCTAATGAGGAATTAGGACTTCCTGTTGATTCTAGAGAGTATG 1439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 GTCGAGACACGGTTGAAGCTAATGAGGAATTAGGACTTCCTGTTGATTCTAGAGAGTATG 1433 Query 1440 GAATTGGTGCACAGATAATAAGGGATTTAGGTGTTAGGACAATGAAGCTGATGACAAATA 1499 |||||||||||||| |||||||||||||||| || |||||||||||||||||||| |||| Sbjct 1434 GAATTGGTGCACAGGTAATAAGGGATTTAGGCGTGAGGACAATGAAGCTGATGACGAATA 1493 Query 1500 ATCCCGCAAAGTATGTTGGTTTGAAGGGATATGGATTAGCCATTGTTGGGAGAGTCCCTC 1559 |||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 1494 ATCCGGCAAAGTATGTTGGTCTGAAGGGATACGGATTAGCCATTGTTGGGAGAGTCCCTC 1553 Query 1560 TATTGAGTCTTATCACGAAGGAGAATAAGAGATATCTGGAGACAAAGCGGACCAAGATGG 1619 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1554 TATTGAGTCTTATCACAAAGGAGAATAAGAGATATCTGGAGACAAAGCGGACCAAGATGG 1613 Query 1620 GTCACATGTATGGCTTGAAGTTCAAAGGGGATGTTGTGGAGAAGATTGAGTCTGAATCTG 1679 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 1614 GTCACATGTATGGCTTGAAGTTCAAAGGCGATGTTGTGGAGAAGACTGAGTCTGAATCTG 1673 Query 1680 AGTCCTAAGCTTAAAAACCAGGACGAACCGAATGGAATCAAGAACTATAGATATAATACT 1739 ||||||||| || ||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 1674 AGTCCTAAGTTTGAAAACCAGGACGAACCGAATGGAATAAAGAAATATAGGTATAATACT 1733 Query 1740 TCACAAAAAACAAGGAAAGAAATTGACACAGAAGAAGA-G--GAA-AAA--GACATTTGA 1793 | | ||||| || ||||||||||||||||||||||||| | ||| ||| ||| ||||| Sbjct 1734 TGA-AAAAACCA-GGAAAGAAATTGACACAGAAGAAGAAGAAGAAGAAAAAGACTTTTGA 1791 Query 1794 TCTGTCTGAGAAACTTGATTAGATTGGTTTATGTTCTAATCTAATCTGATTTGAt-tttt 1852 || |||||||||||||||||||||||||||||||||||||||||||| || |||| |||| Sbjct 1792 TCCGTCTGAGAAACTTGATTAGATTGGTTTATGTTCTAATCTAATCTTATCTGATATTTT 1851 Query 1853 ttttA-TT-TTGT 1863 ||||| || |||| Sbjct 1852 TTTTACTTCTTGT 1864 > Ahg932206 jgi|Araly1|932206|scaffold_400194.1 Length=1468 Score = 377 bits (204), Expect = 1e-103 Identities = 620/817 (76%), Gaps = 44/817 (5%) Strand=Plus/Plus Query 397 TGAAGATGATGACTTTGAGTTGGATTTACCAACTCCTGG-TTTCTCTTCTATCCCTGAGG 455 ||| ||||| || ||||| || ||| ||| ||| ||| ||| | ||||| ||| | | Sbjct 296 TGAGGATGAAGAGTTTGATTTAGATCGACCTACTGATGGATTT-GCGTCTATTCCTCAAG 354 Query 456 CCATTGAAGATATACGCCAAGGAAAGCTTGTGGTGGTTGTGGATGATGAAGATAGGGAAA 515 | ||||| ||||| || | || ||| | || || ||||| |||||||||||||| |||| Sbjct 355 CTATTGAGGATATTCGACTGGGCAAGATGGTAGTTGTTGTAGATGATGAAGATAGAGAAA 414 Query 516 ATGAAGGGGATTTGGTGATGGCTGC-TCAGTTAGCAACACCTGAAGCTATGGCTTTTATT 574 | ||||| |||||| | |||||||| || ||| | |||||||||||||||||||||| || Sbjct 415 ACGAAGGAGATTTGATAATGGCTGCATC-GTTGGTAACACCTGAAGCTATGGCTTTTGTT 473 Query 575 GTGAGA-CATGGAACTGGGATAGTTTGTGTGAGCATGAAAGAAGATGATC-TCGAGAGGT 632 || | | ||||| ||||| || || |||||||||||||||| || || | | ||||||| Sbjct 474 GT-AAAGCATGGGACTGGAATCGTGTGTGTGAGCATGAAAGGCGAAGA-CTTGGAGAGGT 531 Query 633 T-GCACCTTCCTCTAATGGTGAATCAG-AAGGAAAACGAAGAAAAGCT-CTCTACTGCAT 689 | | | |||||| ||||||||| | | |||| ||||| ||||| || | | || || | Sbjct 532 TAG-AGCTTCCTTTAATGGTGACGC-GAAAGGGTAACGAGGAAAAACTCCAC-ACGGCCT 588 Query 690 TTACAGTGACTGTGGATGC-AAAACATGGTACAACAACGGGAGTATCAGCTCGTGACAGG 748 | || || | ||||| || |||| | || ||| | || || || ||||||||||| ||| Sbjct 589 TCACGGTTTCAGTGGACGCGAAAA-AGGGAACATCCACAGGTGTCTCAGCTCGTGATAGG 647 Query 749 GCAAC-AACCATATTGTCTCTTGCATCAAGAGATTCAAAGCCTGAGGATTTCAATCGTCC 807 || | ||| ||||| | |||||||||| ||||||||| ||| | |||||||||||||| Sbjct 648 GC-GCAAACAATATTAACCCTTGCATCAAAAGATTCAAAACCTCAAGATTTCAATCGTCC 706 Query 808 AGGTCATATCTTCCCACTGAAGTAT-C-GGGAAGGTGGGGTTCTGAAAAGGGCTGGACAC 865 |||||||| || || || || || | | |||||||| ||||| ||||| || || || Sbjct 707 TGGTCATATTTTTCCTTTG-AG-ATACAGAGAAGGTGGTGTTCTTAAAAGAGCAGGGCAT 764 Query 866 ACTGAAGCATCTGTTGATC-TCACTGTTTTAGCTGGACTGGATCCTGT-TGGAGTACTT- 922 || ||||| |||||||| | | ||||| || || || | || || || | | || || Sbjct 765 ACAGAAGCCTCTGTTGA-CTTGACTGTGTTGGCCGGTTTAGAACCAGTATCG-GT-TTTA 821 Query 923 TGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATTACCAAAACTTCGTGAATTTGCC 982 ||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||| || Sbjct 822 TGTGAGATTGTAGATGATGATGGTTCCATGGCTAGATTACCAAGACTTCGCCAATTCGCT 881 Query 983 GCCGAGAACAACCTGAAAGTTGTTTCCATCGCAGATTTGATCAGGTATAGAAG-AAAGAG 1041 |||||| || ||||| | |||| ||||| ||||| ||||| || |||| ||| || Sbjct 882 AAAGAGAACGACTTGAAAATAATTTCAATCGCTGATTTAATCAGATACCGAAGGAAA-AG 940 Query 1042 AGATAAATTAGTGGAACGTGCTT-CTGCGGCT-CGG--ATCCCAACAATGTGGGGACCTT 1097 ||| | | | || || || || |||||| | || || || |||||||||||||| | Sbjct 941 AGAGAGACTGGTTGA--GT--TTACTGCGGTTGCGCCTATACCGACAATGTGGGGACCAT 996 Query 1098 TCACTGCTTACTGCTATAGGTCCAT-A-TTAGACGGAATAGAGCACATAGCAATGGTTAA 1155 ||| || | |||| || ||| || | || || ||| | |||||||| |||||||| || Sbjct 997 TCAAAGCACATTGCTTTAAGTC-ATTACTT-GATGGAGTTGAGCACATTGCAATGGTCAA 1054 Query 1156 GGGTGAGATTGGTGACGGTCAAG-ACATTCTCGTGAG 1191 ||| || || || || || ||| | ||||||||||| Sbjct 1055 GGGGGAAATCGGAGATGGG-AAGGATATTCTCGTGAG 1090 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77437468085 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5