BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64310.1 Length=714 Score E Sequences producing significant alignments: (Bits) Value Ahg496633 jgi|Araly1|496633|fgenesh2_kg.8__2449__AT5G64310.1 848 0.0 > Ahg496633 jgi|Araly1|496633|fgenesh2_kg.8__2449__AT5G64310.1 Length=672 Score = 848 bits (459), Expect = 0.0 Identities = 629/705 (89%), Gaps = 36/705 (5%) Strand=Plus/Plus Query 2 aacaacaacaacaaagcaaaaacactcccaaaccaaaaaaaGAAGAAGAAGAAGCTAAAT 61 ||||||||||||| |||||||||||||||||||| |||| || | |||||||||||| Sbjct 1 AACAACAACAACAGAGCAAAAACACTCCCAAACC-CTAAAA-AA-CA-AAGAAGCTAAAT 56 Query 62 TCGAATCTCTCTCTTTTTTGAAATATGGCTTTTTCCAAATCTCTAGTGTTTGTTCTTCTC 121 ||||||||||||| ||| ||||| |||||||| || |||||||||| ||||||||||||| Sbjct 57 TCGAATCTCTCTC-TTTCTGAAAAATGGCTTTCTCGAAATCTCTAGGGTTTGTTCTTCTC 115 Query 122 GCTGCTCTTTTGATTTCTTCCGCAGTGGCTCAATCTCCGGCTCCAGCTCCATCTAACGTC 181 ||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||| Sbjct 116 GCTGCTCTTTTGATTTCTTCCACGGTGGCTCAGTCTCCAGCTCCAGCTCCATCTAACGTC 175 Query 182 GGAGGTAGACGGATCTCACCGGCTCCTTCACCTAAGAAGATGACTGCTCCTGCTCCTGCA 241 ||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |||||| Sbjct 176 GGAGGAAGACGGATCTCACCGGCTCCTTCACCTAAGAAGACGACTTCTCCTGCACCTGCA 235 Query 242 CCTGAAGTTTCTCCTTCTCCTTCTCCGGCAGCCGCATTGACTCCAGAATCCTCTGCTTCA 301 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 236 CCTGAAGTTTCTCCTTCTCCTTCTCCGGTAGCCGCATTGACTCCAGAATCCTCTGCTTCA 295 Query 302 CCACCATCGCCGCCTCTAGCTGATTCTCCTACCGCTGACTCCCCGGCTTTGTCTCCATCT 361 || |||||||||||||| ||||||||||||||| ||||||| || ||||| ||||| || Sbjct 296 CCTCCATCGCCGCCTCTTGCTGATTCTCCTACCTCTGACTCACCTGCTTTATCTCCGTCC 355 Query 362 GCGATCTCCGATTCTCCGACTGAAGCTCCTGGTCCTGCTCAGGGCGGCGCCGTTTCGAAC 421 || ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| Sbjct 356 GCAATCTCCGATTCGCCTACTGAAGCTCCTGGTCCTGCTCAGGGCGCCGCCGTTTCGAAC 415 Query 422 AAATT-CGCCAGT-TTCGGATCTGTGGCGGTTATGTTAACTGCTGCCGTTTTGGTTATCT 479 | || || |||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 416 -AGTTACG-CAGTCTTCGGATCTGTGGCGGTTATGTTAACCGCTGCCGTTTTGGTTATCT 473 Query 480 AGGTTGTTCCGATCAATGAAGCTTCtttgattttatttatttattttagatatat-taga 538 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || Sbjct 474 AGGTTGTTCCGATGAATGAAGCTTCTTTGATTTTATTTATTTATTTTAGATATATAT-GA 532 Query 539 gttttgtgagagagatgatgattcattatttttctcttctttctattattttctttgaat 598 ||||||||||||||||||| |||| ||||||||||||||||| |||| | |||| |||| Sbjct 533 GTTTTGTGAGAGAGATGATCATTCCTTATTTTTCTCTTCTTTTTATT-TCATCTTAGAAT 591 Query 599 atttttctttcttcGGCTGATCCTATGCGCGTTTGTATCTATCCAATATTTATCTATCTA 658 ||||||||||||| | | | | | |||||||| |||||||| || | Sbjct 592 ATTTTTCTTTCTT----T--T--T--G----T----ATCTATCCGATATTTAT--AT--A 629 Query 659 TATGATTTATCAGATTTTCTAAATAACTTTCTATGGAAATATTAA 703 | |||||||||||||||||||||||||||||||||||||||||| Sbjct 630 T--GATTTATCAGATTTTCTAAATAACTTTCTATGGAAATATTAA 672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26266689813 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5