BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64460.2
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951277 jgi|Araly1|951277|scaffold_803164.1 1487 0.0
Ahg916352 jgi|Araly1|916352|Al_scaffold_0008_1103 481 6e-135
> Ahg951277 jgi|Araly1|951277|scaffold_803164.1
Length=889
Score = 1487 bits (805), Expect = 0.0
Identities = 857/882 (97%), Gaps = 3/882 (0%)
Strand=Plus/Plus
Query 88 GTTTGCAGAAATGGAGACTGGTGCTGGTATAGGTTTGTACCCTTTGCATCGCTGCAAAAC 147
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 11 GTTTGCAGAAATGGAGACTGGTGCTGGTATAGGTTTGTACCCTTTGCACCGCTGCAAAAC 70
Query 148 CATTTACCTAGTGAGACATGCTCAGGGGATTCACAATGTGGATGGGGAGAAGAATTATAA 207
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 71 CATTTACCTTGTGAGACATGCTCAGGGGATTCACAATGTTGATGGGGAAAAGAACTATAA 130
Query 208 GGCTTACATGTCTCATGACTACTTTGATGCTGAGTTGACCCAGCTTGGCTGGAAACAGGT 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 GGCTTACATGTCTCATGACTACTTTGATGCTGAGTTGACCCAGCTTGGCTGGAAACAGGT 190
Query 268 AGATAGTTTGCGTAAGCATGTTCATTCCAGTGGACTTCACAAGAAGATCGAACTGGTCAT 327
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 191 AGATAGTTTGCGTAAGCATGTTCATTCCACTGGACTTCACAAGAAGATCGAACTGGTCAT 250
Query 328 TTCGTCTCCACTGATGAGAACCTTGCAAACTGCTGTTGGTGTTTTTGGTGGAGAGGGCTA 387
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 251 TTCGTCTCCATTGATGAGAACATTGCAAACTGCTGTTGGTGTTTTTGGTGGAGAGGGCTA 310
Query 388 CACGGATATGAGTGATGTACTACCTCTAATGGTAGCAAATGCAGGAAATAGCAGCCGTGC 447
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CACAGATATGAGTGATGTACTACCTCTAATGGTAGCAAATGCAGGAAATAGCAGCCGTGC 370
Query 448 AGCTATATCGAGTTTAAACTGCCCACCAGTTATTACAGAGGAGTCCTGCAGAGAGCATTT 507
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 371 AGCTATATCGAGTTTAAACTGCCCACCAATTATTACAGAGGAGTCCTGCAGAGAACATTT 430
Query 508 GGGAGTGCATCCATGTGATCAGAGGAGAAGTATCAGCGACTATCAGTTTCTTTTCCCTGC 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GGGAGTGCATCCATGTGATCAGAGGAGAAGTATCAGCGACTATCAGTTTCTTTTCCCTGC 490
Query 568 AGTTGACTTTTCACTGATAGAAAGCGAGGAAGACAAGTTATGGAAGGCTGATGTTAGAGA 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AGTTGACTTTTCACTGATAGAAAGCGAGGAAGACAAGTTATGGAAGGCTGATGTTAGAGA 550
Query 628 AACGATTGAAGAACTTGCAGCTAGAGGAAAAAAGTTCCTGAACTGGCTATGGACACGGAA 687
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AACAATTGAAGAACTTGCAGCTAGAGGAAAAAAGTTCCTGAACTGGCTATGGACACGGAA 610
Query 688 AGAAAAAGAGATAGCTATTGTGACACACAGTGGTTTCTTGTTTCACACATTGAATGCACT 747
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 AGAAAAAGAGATAGCGATTGTGACACACAGTGGTTTCTTGTTTCACACATTGAATGCACT 670
Query 748 ACAAAACGAGTGTCATCCAGATGTTAAGAAGGAAATTTGCGGCCACTTTGCTAATTGTGA 807
|||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 671 ACAAAACGAGTGTCATCCAGATGTTAAGAAGGAAATTTGCAACCACTTTGCGAACTGTGA 730
Query 808 GCTACGTTCAATGGTCATCGTCGATAGAAGTATGTTGGGATCGGACAGTTCGGTGACTGA 867
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 731 GCTACGTTCAATGGTCATCGTCGATAGAAGTATGTTGGGATCAGACACTTCGGTGACTGA 790
Query 868 TTATCCAGGAAAGATTCCAAAGGGGATTGATCTTCCAAGTGATGCTGTTGTAGATGATAA 927
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 791 TTATCCAGGAAAGATTCCAAAGGGGAGTGACCTTCCAAGTGATGCTGTTGTAGATGATAA 850
Query 928 CAACATCAAAGTTGAGTGATTCTTTATGATGGACACTGCATT 969
|||||||||||||||||||||||||||| | |||| |||||
Sbjct 851 CAACATCAAAGTTGAGTGATTCTTTATG--G-ACACGGCATT 889
> Ahg916352 jgi|Araly1|916352|Al_scaffold_0008_1103
Length=498
Score = 481 bits (260), Expect = 6e-135
Identities = 324/353 (92%), Gaps = 12/353 (3%)
Strand=Plus/Plus
Query 584 ATAGAAAGCGAGGAAGACAAGTTATGGAAGGCTGATGTTAGAGAAACGATTGAAGAACTT 643
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 ATAGAAAGCGAGGAAGACAAGTTATGGAAGGCTGATGTTAGGGAAACAATTGAAGAACTT 60
Query 644 GCAGCTAGAGGAAAAAAGTTCCTGAACTGGCTATGGACACGGAAAGAAAAAGAGATAGCT 703
|||||||||||||||| |||||||||| ||||||||| ||||||| |||||||||||
Sbjct 61 GCAGCTAGAGGAAAAAGGTTCCTGAAC---CTATGGACAAGGAAAGAGAAAGAGATAGCG 117
Query 704 ATTGTGACACACAGTGGTTTCTTGTTTCACACATTGAATGCACTACAAAACGAGTGTCAT 763
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATTGTGACACACTGTGGTTTCTTGTTTCACACATTGAATGCACTACAAAACGAGTGTCAT 177
Query 764 CCAGATGTTAAGAAGGAAATTTGCGGCCACTTTGCTAATTGTGAGCTACGTTCAATGGTC 823
|||||||||||||||||||||||| || ||||| ||||||||||||| |||||| |||
Sbjct 178 CCAGATGTTAAGAAGGAAATTTGCAGC---TTTGCGAATTGTGAGCTACATTCAATTGTC 234
Query 824 ATCGTCGATAGAAGTATGTTGGGATCGGACAGTTCGGTGACTGATTATCCAGGAAAGATT 883
||||| ||||||| | ||||||||| |||| |||||||||||||||| |||||||||||
Sbjct 235 ATCGTTGATAGAA-T--GTTGGGATCAGACACTTCGGTGACTGATTATTCAGGAAAGATT 291
Query 884 CCAAAGGGGATTGATCTTCCAAGTGATGCTGTTGTAGATGA-TAACAACATCA 935
|||||||||| ||| |||||||||||||||||||||||||| | ||||||||
Sbjct 292 CCAAAGGGGAGTGACCTTCCAAGTGATGCTGTTGTAGATGAGT--CAACATCA 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5